Wall clock time and date at job start Tue Mar 31 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48497 * 109.47281 * 270.00182 * 3 2 1 5 5 H 1.48498 * 109.46876 * 30.00008 * 3 2 1 6 6 H 1.48500 * 109.46903 * 150.00074 * 3 2 1 7 7 C 1.38811 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99797 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.85032 * 336.19842 * 10 9 7 12 12 C 1.53782 * 113.68971 * 107.46371 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.19569 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.52999 * 113.66529 * 139.88900 * 13 12 10 16 16 N 1.46494 * 109.47391 * 87.55384 * 15 13 12 17 17 C 1.34772 * 120.00463 * 180.02562 * 16 15 13 18 18 O 1.21281 * 119.99889 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00326 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47255 * 179.97438 * 19 17 16 21 21 N 1.46501 * 109.47097 * 179.97438 * 20 19 17 22 22 C 1.34428 * 126.82499 * 124.99735 * 21 20 19 23 23 N 1.30831 * 108.07865 * 179.97438 * 22 21 20 24 24 C 1.33241 * 109.82753 * 0.02562 * 23 22 21 25 25 N 1.30707 * 108.95010 * 359.75361 * 24 23 22 26 26 C 1.53781 * 113.61266 * 204.99945 * 10 9 7 27 27 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 28 28 H 0.97001 * 119.99515 * 359.97438 * 9 7 2 29 29 H 1.08997 * 113.61668 * 203.67120 * 12 10 9 30 30 H 1.08994 * 113.61387 * 334.57855 * 12 10 9 31 31 H 1.09002 * 109.47053 * 207.55709 * 15 13 12 32 32 H 1.09004 * 109.47121 * 327.55345 * 15 13 12 33 33 H 0.97000 * 119.99680 * 359.97438 * 16 15 13 34 34 H 1.09000 * 109.46571 * 299.99706 * 19 17 16 35 35 H 1.08996 * 109.47470 * 59.99592 * 19 17 16 36 36 H 1.09000 * 109.47256 * 299.99488 * 20 19 17 37 37 H 1.09004 * 109.47121 * 59.99874 * 20 19 17 38 38 H 1.07995 * 125.96080 * 359.93208 * 22 21 20 39 39 H 1.08005 * 125.52590 * 179.97438 * 24 23 22 40 40 H 1.09002 * 113.61445 * 25.35018 * 26 10 9 41 41 H 1.09002 * 113.61408 * 156.16749 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0657 -3.5637 -0.4059 12 6 2.0011 -4.4032 1.3428 13 6 0.7218 -5.0831 0.8219 14 1 -0.1898 -4.5302 1.0484 15 6 0.6239 -6.5665 1.1834 16 7 -0.0070 -6.7083 2.4979 17 6 -0.1982 -7.9338 3.0250 18 8 0.1516 -8.9194 2.4109 19 6 -0.8477 -8.0796 4.3770 20 6 -0.9454 -9.5630 4.7386 21 7 -1.5763 -9.7047 6.0532 22 6 -2.6632 -10.4377 6.3505 23 7 -2.9072 -10.3020 7.6287 24 6 -2.0021 -9.4933 8.1782 25 7 -1.1627 -9.1056 7.2543 26 6 1.2602 -4.8288 -0.5960 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 0.0002 29 1 2.8305 -5.0940 1.4940 30 1 1.8319 -3.7497 2.1985 31 1 0.0240 -7.0841 0.4347 32 1 1.6235 -7.0004 1.2114 33 1 -0.2864 -5.9200 2.9892 34 1 -0.2483 -7.5615 5.1257 35 1 -1.8474 -7.6463 4.3485 36 1 -1.5450 -10.0808 3.9899 37 1 0.0542 -9.9967 4.7670 38 1 -3.2355 -11.0340 5.6554 39 1 -1.9656 -9.2075 9.2191 40 1 0.4929 -4.5188 -1.3054 41 1 1.8872 -5.6353 -0.9762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691487240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:25 Heat of formation + Delta-G solvation = 59.362795 kcal Electronic energy + Delta-G solvation = -22090.693668 eV Core-core repulsion = 18621.552801 eV Total energy + Delta-G solvation = -3469.140868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.98703 -40.97476 -39.88881 -36.16070 -35.73453 -34.96381 -32.26838 -32.16242 -31.55539 -28.74874 -26.43596 -26.09685 -25.34417 -23.14994 -22.90712 -22.45927 -21.37209 -19.83188 -19.34120 -18.66368 -17.61630 -17.17594 -16.96310 -16.70796 -16.45519 -15.86112 -15.80012 -15.53928 -15.22715 -14.91613 -14.67578 -14.63298 -14.24662 -13.72489 -13.56577 -13.29880 -13.04388 -12.92256 -12.91784 -12.64771 -12.27966 -12.16430 -12.06833 -11.57462 -11.48918 -11.15911 -11.00263 -10.91216 -10.82668 -10.76647 -10.61440 -10.07541 -9.00690 -7.96666 -5.24690 0.69024 1.31557 1.47556 1.48398 1.55745 1.56850 2.01962 2.23864 2.54864 3.36133 3.47237 3.54648 3.61958 3.71390 3.78256 3.81089 3.94159 4.13000 4.16308 4.20374 4.33035 4.35723 4.41223 4.66118 4.73377 4.77614 4.79046 4.92848 4.99830 5.11653 5.27523 5.28328 5.35066 5.47523 5.47989 5.54604 5.66276 5.89026 6.27382 6.48339 7.12473 7.15420 7.32425 8.09858 8.31775 9.26578 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023302 B = 0.002285 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.330515 B =12252.395618 C =13068.806724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.142 3.858 11 H 0.058 0.942 12 C -0.154 4.154 13 C -0.102 4.102 14 H 0.081 0.919 15 C 0.140 3.860 16 N -0.718 5.718 17 C 0.520 3.480 18 O -0.579 6.579 19 C -0.142 4.142 20 C 0.148 3.852 21 N -0.384 5.384 22 C 0.262 3.738 23 N -0.580 5.580 24 C 0.192 3.808 25 N -0.352 5.352 26 C -0.134 4.134 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.090 0.910 38 H 0.259 0.741 39 H 0.238 0.762 40 H 0.057 0.943 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 -21.419 9.996 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.032 3.968 11 H 0.077 0.923 12 C -0.195 4.195 13 C -0.121 4.121 14 H 0.100 0.900 15 C 0.017 3.983 16 N -0.369 5.369 17 C 0.307 3.693 18 O -0.460 6.460 19 C -0.183 4.183 20 C 0.027 3.973 21 N -0.174 5.174 22 C -0.034 4.034 23 N -0.307 5.307 24 C -0.110 4.110 25 N -0.180 5.180 26 C -0.173 4.173 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.248 0.752 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.108 0.892 38 H 0.275 0.725 39 H 0.254 0.746 40 H 0.076 0.924 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.010 -21.632 9.762 23.923 hybrid contribution -0.178 1.591 0.014 1.601 sum -3.188 -20.041 9.776 22.525 Atomic orbital electron populations 1.69801 1.06527 1.26072 1.59539 1.25540 0.96392 1.01030 1.03802 0.85162 0.77728 0.79621 0.77392 1.21486 1.22285 1.19491 1.19667 0.91512 0.85219 1.40985 0.90612 1.42296 1.05322 1.00552 1.87626 1.21397 0.95070 0.84968 0.95385 0.92346 1.23747 0.97439 0.99212 0.99060 1.22519 0.98203 0.93918 0.97466 0.90050 1.21304 0.97966 0.95268 0.83804 1.46041 1.61489 1.08635 1.20762 1.20620 0.78271 0.82825 0.87563 1.90711 1.53025 1.38528 1.63719 1.21774 1.04126 0.98188 0.94173 1.21599 1.00737 0.96671 0.78328 1.50678 1.22767 1.35656 1.08331 1.26932 0.88075 0.94182 0.94196 1.70585 1.29464 1.23057 1.07640 1.26560 0.88990 0.93932 1.01554 1.77999 1.25203 1.22967 0.91880 1.23342 0.99952 0.98572 0.95476 0.94016 0.79340 0.89071 0.93474 0.91472 0.91347 0.75236 0.87502 0.86734 0.84927 0.89217 0.72542 0.74573 0.92400 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 2 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.24 -13.12 9.97 84.03 0.84 -12.29 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -34.86 5.31 -320.44 -1.70 -36.57 16 10 C 0.14 5.23 4.56 45.52 0.21 5.44 16 11 H 0.06 2.18 8.10 -2.39 -0.02 2.16 16 12 C -0.15 -4.66 7.44 31.18 0.23 -4.43 16 13 C -0.10 -2.69 3.65 -10.20 -0.04 -2.73 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.14 3.08 5.51 86.38 0.48 3.56 16 16 N -0.72 -13.75 5.56 -463.07 -2.57 -16.33 16 17 C 0.52 9.94 7.83 87.66 0.69 10.63 16 18 O -0.58 -14.75 15.98 -3.03 -0.05 -14.80 16 19 C -0.14 -1.88 5.92 29.85 0.18 -1.71 16 20 C 0.15 1.83 5.84 86.38 0.50 2.33 16 21 N -0.38 -5.77 3.69 -352.06 -1.30 -7.07 16 22 C 0.26 3.31 12.63 180.36 2.28 5.59 16 23 N -0.58 -10.40 11.19 -204.01 -2.28 -12.68 16 24 C 0.19 3.32 13.03 180.77 2.36 5.68 16 25 N -0.35 -6.91 12.57 -61.25 -0.77 -7.68 16 26 C -0.13 -3.87 7.38 31.12 0.23 -3.64 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.85 16 28 H 0.37 19.39 7.90 -92.71 -0.73 18.66 16 29 H 0.09 2.36 7.90 -2.39 -0.02 2.34 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.54 7.85 -2.38 -0.02 1.52 16 33 H 0.41 6.82 8.47 -92.71 -0.79 6.04 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.13 1.06 8.04 -2.39 -0.02 1.04 16 37 H 0.09 1.30 8.10 -2.38 -0.02 1.28 16 38 H 0.26 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.24 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.11 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -73.07 353.06 1.58 -71.49 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.47 Total: 29.35 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 8.41 Total: 4.65 kcal Atomic # 7 Polarization: -129.74 SS G_CDS: -8.34 Total: -138.08 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.05 Total: -14.80 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -73.07 1.58 -71.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691487240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.853 kcal (2) G-P(sol) polarization free energy of solvation -73.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds