Wall clock time and date at job start Tue Mar 31 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46757 * 2 1 4 4 C 1.52991 * 109.47565 * 239.99340 * 2 1 3 5 5 N 1.46499 * 109.47355 * 64.99965 * 4 2 1 6 6 C 1.36936 * 120.00676 * 179.72657 * 5 4 2 7 7 H 1.08003 * 119.99598 * 0.27466 * 6 5 4 8 8 C 1.38811 * 120.00427 * 180.27581 * 6 5 4 9 9 N 1.31618 * 119.99750 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47033 * 59.99743 * 10 8 6 12 12 H 1.48490 * 109.47142 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46864 * 300.00065 * 10 8 6 14 14 C 1.53001 * 109.47021 * 119.98950 * 2 1 3 15 15 N 1.46499 * 109.47407 * 295.00464 * 14 2 1 16 16 C 1.34775 * 119.99962 * 179.97438 * 15 14 2 17 17 O 1.21648 * 120.00191 * 354.86786 * 16 15 14 18 18 C 1.47080 * 120.00051 * 174.85882 * 16 15 14 19 19 C 1.39341 * 120.58968 * 185.79616 * 18 16 15 20 20 C 1.39470 * 118.96158 * 179.97438 * 19 18 16 21 21 C 1.35762 * 120.13037 * 0.02726 * 20 19 18 22 22 N 1.35432 * 121.22698 * 359.97416 * 21 20 19 23 23 C 1.46503 * 119.46879 * 179.97438 * 22 21 20 24 24 C 1.34652 * 121.06032 * 359.73117 * 22 21 20 25 25 O 1.21892 * 120.10493 * 180.28699 * 24 22 21 26 26 H 1.09004 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47286 * 300.00703 * 1 2 3 28 28 H 1.09001 * 109.47192 * 60.00646 * 1 2 3 29 29 H 1.09002 * 109.47306 * 305.00401 * 4 2 1 30 30 H 1.09000 * 109.47782 * 185.00166 * 4 2 1 31 31 H 0.97001 * 119.99676 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99787 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.46847 * 55.00456 * 14 2 1 34 34 H 1.09001 * 109.47011 * 175.00185 * 14 2 1 35 35 H 0.96993 * 120.00132 * 0.02562 * 15 14 2 36 36 H 1.08007 * 120.51843 * 0.02562 * 19 18 16 37 37 H 1.07994 * 119.93605 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.38392 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.47223 * 0.02562 * 23 22 21 40 40 H 1.09004 * 109.47089 * 119.99944 * 23 22 21 41 41 H 1.08999 * 109.47274 * 240.00390 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2490 5 7 1.6526 0.0351 -2.4423 6 6 2.0065 -0.4179 -3.6852 7 1 2.5676 -1.3353 -3.7859 8 6 1.6443 0.3018 -4.8155 9 7 0.9601 1.4195 -4.6926 10 14 2.1265 -0.3166 -6.5109 11 1 1.5333 -1.6594 -6.7352 12 1 1.6243 0.6257 -7.5428 13 1 3.6060 -0.4074 -6.6022 14 6 2.0399 -0.7210 1.2494 15 7 1.6523 0.0357 2.4424 16 6 1.9954 -0.4131 3.6661 17 8 2.5445 -1.4919 3.7864 18 6 1.7061 0.4015 4.8560 19 6 2.1610 0.0076 6.1127 20 6 1.8676 0.8060 7.2180 21 6 1.1490 1.9473 7.0627 22 7 0.7037 2.3363 5.8443 23 6 -0.0691 3.5749 5.7210 24 6 0.9639 1.6055 4.7437 25 8 0.5590 1.9747 3.6548 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6054 -1.7199 -1.2949 30 1 3.1264 -0.7996 -1.2054 31 1 1.1490 0.8591 -2.3518 32 1 0.7073 1.9226 -5.4825 33 1 1.6053 -1.7196 1.2954 34 1 3.1263 -0.7992 1.2058 35 1 1.1481 0.8593 2.3517 36 1 2.7326 -0.9015 6.2290 37 1 2.2127 0.5158 8.1993 38 1 0.9284 2.5563 7.9268 39 1 -0.1785 4.0342 6.7035 40 1 0.4512 4.2629 5.0546 41 1 -1.0544 3.3493 5.3133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698772589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:10 Heat of formation + Delta-G solvation = -25.213216 kcal Electronic energy + Delta-G solvation = -22974.143166 eV Core-core repulsion = 19469.042056 eV Total energy + Delta-G solvation = -3505.101110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.87024 -39.28338 -37.54430 -36.63014 -34.83937 -34.10618 -32.26163 -30.62883 -29.81476 -28.17930 -26.63506 -25.58458 -24.31600 -23.09236 -22.29116 -20.76325 -19.81861 -18.15901 -17.85324 -17.38018 -16.84259 -16.61832 -15.86965 -15.59432 -15.17512 -14.91082 -14.49723 -14.12095 -14.00049 -13.53675 -13.43207 -13.29096 -12.99052 -12.90435 -12.56690 -12.45806 -12.31874 -12.10765 -11.87927 -10.94654 -10.80408 -10.59769 -10.46022 -10.42055 -10.36270 -10.22462 -10.04196 -9.79649 -9.56775 -8.78703 -8.75961 -8.42424 -6.82329 -5.68085 -2.96004 0.05113 1.38216 2.04268 2.64088 3.45494 3.50476 3.54091 3.55710 3.58440 3.97653 4.04188 4.50859 4.55717 4.67088 4.76080 4.76389 4.85284 5.10487 5.27047 5.36258 5.42028 5.51103 5.61788 5.66970 5.74738 5.94893 6.03728 6.16242 6.18550 6.27741 6.44105 6.49046 6.56974 6.77161 6.82706 6.93686 7.03353 7.45088 7.77997 7.92922 8.49996 8.51306 9.62032 10.21109 10.56273 11.55059 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.002765 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.226319 B =10124.566854 C =10845.519391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.075 0.925 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.016 4.016 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.711 5.711 16 C 0.571 3.429 17 O -0.556 6.556 18 C -0.270 4.270 19 C 0.056 3.944 20 C -0.240 4.240 21 C 0.156 3.844 22 N -0.494 5.494 23 C 0.059 3.941 24 C 0.526 3.474 25 O -0.535 6.535 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.416 0.584 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 4.298 31.325 31.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.093 0.907 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.212 4.212 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.213 1.213 14 C 0.001 3.999 15 N -0.371 5.371 16 C 0.358 3.642 17 O -0.437 6.437 18 C -0.277 4.277 19 C 0.033 3.967 20 C -0.263 4.263 21 C 0.026 3.974 22 N -0.202 5.202 23 C -0.082 4.082 24 C 0.328 3.672 25 O -0.416 6.416 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.218 0.782 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.262 0.738 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.186 0.814 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.358 3.801 30.482 30.748 hybrid contribution -0.119 0.405 -0.813 0.916 sum -1.477 4.206 29.669 30.002 Atomic orbital electron populations 1.21774 0.94721 1.01712 1.01618 1.21519 0.96802 1.00463 0.94046 0.90651 1.20579 0.96512 0.94187 0.85428 1.42352 1.66775 1.27811 1.00598 1.19213 1.28507 1.05302 0.83759 0.91220 1.24735 1.01188 0.97452 0.97809 1.69657 1.43717 1.16561 1.28501 0.86249 0.77990 0.77642 0.84206 1.21306 1.21757 1.21323 1.21403 0.99804 0.95382 0.83332 1.46602 1.56445 1.29067 1.04986 1.17401 0.78939 0.85023 0.82866 1.90772 1.44731 1.21581 1.86630 1.21114 1.11232 0.99030 0.96330 1.22046 0.88095 0.96500 0.90104 1.20710 1.07846 0.97063 1.00697 1.22271 0.91445 0.95763 0.87916 1.45387 1.44352 1.22793 1.07640 1.22278 0.97331 0.84331 1.04255 1.17060 0.81914 0.84640 0.83551 1.90679 1.54824 1.71489 1.24648 0.93006 0.93589 0.91322 0.95998 0.96176 0.78181 0.93552 0.91454 0.91592 0.73813 0.83175 0.82783 0.81407 0.89059 0.89456 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.94 37.16 0.33 -2.20 16 2 C -0.11 -2.01 2.46 -90.63 -0.22 -2.24 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.16 3.52 5.65 -4.05 -0.02 3.50 16 5 N -0.73 -19.56 5.33 -59.91 -0.32 -19.88 16 6 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 7 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 8 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 9 N -0.94 -29.24 13.06 55.49 0.72 -28.52 16 10 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 C 0.12 2.13 5.07 -4.04 -0.02 2.11 16 15 N -0.71 -11.68 5.20 -61.49 -0.32 -12.00 16 16 C 0.57 9.20 7.74 -12.68 -0.10 9.11 16 17 O -0.56 -10.23 16.41 5.24 0.09 -10.14 16 18 C -0.27 -3.33 5.92 -104.51 -0.62 -3.95 16 19 C 0.06 0.48 9.70 -38.71 -0.38 0.10 16 20 C -0.24 -1.10 9.99 -40.01 -0.40 -1.50 16 21 C 0.16 0.57 10.28 -16.85 -0.17 0.40 16 22 N -0.49 -3.43 2.98 -126.76 -0.38 -3.81 16 23 C 0.06 0.25 10.04 59.85 0.60 0.85 16 24 C 0.53 6.15 7.44 -14.92 -0.11 6.04 16 25 O -0.53 -7.83 13.70 5.02 0.07 -7.76 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.76 7.18 -51.93 -0.37 0.39 16 28 H 0.07 1.37 7.18 -51.93 -0.37 1.00 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.38 10.72 6.85 -40.82 -0.28 10.44 16 32 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.42 6.85 4.25 -40.83 -0.17 6.68 16 36 H 0.15 1.22 7.71 -52.48 -0.40 0.81 16 37 H 0.15 0.22 8.06 -52.49 -0.42 -0.20 16 38 H 0.17 -0.16 7.79 -52.49 -0.41 -0.57 16 39 H 0.09 0.03 7.70 -51.93 -0.40 -0.37 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -37.63 344.24 -7.09 -44.72 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.76 Total: 9.48 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.36 Total: 4.54 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.29 Total: -64.20 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.15 Total: -17.91 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.63 -7.09 -44.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698772589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.507 kcal (2) G-P(sol) polarization free energy of solvation -37.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds