Wall clock time and date at job start Tue Mar 31 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46757 * 2 1 4 4 C 1.52991 * 109.47565 * 239.99340 * 2 1 3 5 5 N 1.46499 * 109.47355 * 64.99965 * 4 2 1 6 6 C 1.36936 * 120.00676 * 179.72657 * 5 4 2 7 7 H 1.08003 * 119.99598 * 0.27466 * 6 5 4 8 8 C 1.38811 * 120.00427 * 180.27581 * 6 5 4 9 9 N 1.31618 * 119.99750 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00132 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47033 * 59.99743 * 10 8 6 12 12 H 1.48490 * 109.47142 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46864 * 300.00065 * 10 8 6 14 14 C 1.53001 * 109.47021 * 119.98950 * 2 1 3 15 15 N 1.46499 * 109.47407 * 295.00464 * 14 2 1 16 16 C 1.34775 * 119.99962 * 179.97438 * 15 14 2 17 17 O 1.21648 * 120.00191 * 354.86786 * 16 15 14 18 18 C 1.47080 * 120.00051 * 174.85882 * 16 15 14 19 19 C 1.39341 * 120.58968 * 185.79616 * 18 16 15 20 20 C 1.39470 * 118.96158 * 179.97438 * 19 18 16 21 21 C 1.35762 * 120.13037 * 0.02726 * 20 19 18 22 22 N 1.35432 * 121.22698 * 359.97416 * 21 20 19 23 23 C 1.46503 * 119.46879 * 179.97438 * 22 21 20 24 24 C 1.34652 * 121.06032 * 359.73117 * 22 21 20 25 25 O 1.21892 * 120.10493 * 180.28699 * 24 22 21 26 26 H 1.09004 * 109.46725 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47286 * 300.00703 * 1 2 3 28 28 H 1.09001 * 109.47192 * 60.00646 * 1 2 3 29 29 H 1.09002 * 109.47306 * 305.00401 * 4 2 1 30 30 H 1.09000 * 109.47782 * 185.00166 * 4 2 1 31 31 H 0.97001 * 119.99676 * 0.02562 * 5 4 2 32 32 H 0.97002 * 119.99787 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.46847 * 55.00456 * 14 2 1 34 34 H 1.09001 * 109.47011 * 175.00185 * 14 2 1 35 35 H 0.96993 * 120.00132 * 0.02562 * 15 14 2 36 36 H 1.08007 * 120.51843 * 0.02562 * 19 18 16 37 37 H 1.07994 * 119.93605 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.38392 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.47223 * 0.02562 * 23 22 21 40 40 H 1.09004 * 109.47089 * 119.99944 * 23 22 21 41 41 H 1.08999 * 109.47274 * 240.00390 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2490 5 7 1.6526 0.0351 -2.4423 6 6 2.0065 -0.4179 -3.6852 7 1 2.5676 -1.3353 -3.7859 8 6 1.6443 0.3018 -4.8155 9 7 0.9601 1.4195 -4.6926 10 14 2.1265 -0.3166 -6.5109 11 1 1.5333 -1.6594 -6.7352 12 1 1.6243 0.6257 -7.5428 13 1 3.6060 -0.4074 -6.6022 14 6 2.0399 -0.7210 1.2494 15 7 1.6523 0.0357 2.4424 16 6 1.9954 -0.4131 3.6661 17 8 2.5445 -1.4919 3.7864 18 6 1.7061 0.4015 4.8560 19 6 2.1610 0.0076 6.1127 20 6 1.8676 0.8060 7.2180 21 6 1.1490 1.9473 7.0627 22 7 0.7037 2.3363 5.8443 23 6 -0.0691 3.5749 5.7210 24 6 0.9639 1.6055 4.7437 25 8 0.5590 1.9747 3.6548 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.6054 -1.7199 -1.2949 30 1 3.1264 -0.7996 -1.2054 31 1 1.1490 0.8591 -2.3518 32 1 0.7073 1.9226 -5.4825 33 1 1.6053 -1.7196 1.2954 34 1 3.1263 -0.7992 1.2058 35 1 1.1481 0.8593 2.3517 36 1 2.7326 -0.9015 6.2290 37 1 2.2127 0.5158 8.1993 38 1 0.9284 2.5563 7.9268 39 1 -0.1785 4.0342 6.7035 40 1 0.4512 4.2629 5.0546 41 1 -1.0544 3.3493 5.3133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698772589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:10 Heat of formation + Delta-G solvation = -53.332957 kcal Electronic energy + Delta-G solvation = -22975.362529 eV Core-core repulsion = 19469.042056 eV Total energy + Delta-G solvation = -3506.320473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54968 -40.44767 -38.39091 -38.14837 -35.90232 -35.45965 -34.00759 -31.98546 -31.10365 -28.61892 -27.97100 -27.30410 -25.51572 -24.11849 -23.66708 -21.90919 -21.37511 -19.41049 -18.78707 -18.51402 -17.96499 -17.27954 -17.00496 -16.69970 -16.47082 -16.33181 -15.56872 -15.48235 -15.39767 -15.27870 -14.72390 -14.27880 -14.12966 -13.70292 -13.64766 -13.56110 -13.43342 -13.06278 -12.98287 -12.84206 -12.77142 -12.23888 -12.22209 -12.04691 -11.78175 -11.70244 -11.26908 -11.09374 -10.99930 -10.94989 -10.05290 -9.10316 -9.02113 -7.95861 -5.25485 -0.55291 0.77215 1.46028 1.50307 1.51050 1.56356 1.72063 2.34373 2.56963 2.71345 3.36963 3.50550 3.68541 3.77732 3.89400 3.92399 3.99026 4.04919 4.17923 4.30628 4.35187 4.42448 4.49334 4.65352 4.68342 4.81876 4.85246 4.88528 4.96068 4.97981 5.07265 5.23222 5.28146 5.34903 5.46713 5.47693 5.55764 5.88564 6.25784 6.55617 6.85617 7.29625 7.31984 8.06093 8.31710 9.27809 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.002765 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.226319 B =10124.566854 C =10845.519391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.094 4.094 3 H 0.067 0.933 4 C 0.161 3.839 5 N -0.742 5.742 6 C -0.250 4.250 7 H 0.076 0.924 8 C -0.077 4.077 9 N -0.971 5.971 10 Si 0.979 3.021 11 H -0.277 1.277 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.135 3.865 15 N -0.716 5.716 16 C 0.565 3.435 17 O -0.594 6.594 18 C -0.331 4.331 19 C 0.076 3.924 20 C -0.243 4.243 21 C 0.189 3.811 22 N -0.490 5.490 23 C 0.053 3.947 24 C 0.516 3.484 25 O -0.582 6.582 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.026 0.974 30 H 0.022 0.978 31 H 0.375 0.625 32 H 0.252 0.748 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.415 0.585 36 H 0.148 0.852 37 H 0.198 0.802 38 H 0.234 0.766 39 H 0.145 0.855 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.421 4.976 34.792 35.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.386 5.386 6 C -0.381 4.381 7 H 0.094 0.906 8 C -0.269 4.269 9 N -0.621 5.621 10 Si 0.807 3.193 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.203 1.203 14 C 0.010 3.990 15 N -0.376 5.376 16 C 0.355 3.645 17 O -0.478 6.478 18 C -0.338 4.338 19 C 0.052 3.948 20 C -0.265 4.265 21 C 0.058 3.942 22 N -0.195 5.195 23 C -0.087 4.087 24 C 0.320 3.680 25 O -0.468 6.468 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.207 0.793 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.262 0.738 36 H 0.166 0.834 37 H 0.215 0.785 38 H 0.250 0.750 39 H 0.163 0.837 40 H 0.093 0.907 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.294 4.477 34.010 34.328 hybrid contribution -0.136 0.249 -1.604 1.629 sum -1.430 4.726 32.406 32.780 Atomic orbital electron populations 1.21661 0.94245 1.01831 1.01094 1.21307 0.97011 0.99672 0.93305 0.91443 1.20685 0.96588 0.94107 0.85217 1.42528 1.66728 1.27872 1.01438 1.19634 1.28108 1.05444 0.84944 0.90637 1.25627 1.01614 0.97826 1.01807 1.69827 1.45096 1.17871 1.29315 0.85139 0.77932 0.77184 0.79053 1.20297 1.21906 1.20333 1.21170 0.99434 0.95118 0.83279 1.46648 1.56878 1.29032 1.05071 1.18045 0.77835 0.84975 0.83682 1.90719 1.46617 1.23203 1.87241 1.20798 1.16248 1.00668 0.96055 1.22325 0.86018 0.96528 0.89972 1.21215 1.07671 0.96654 1.00937 1.23399 0.87595 0.95222 0.87937 1.45503 1.43520 1.22828 1.07640 1.22556 0.96033 0.82939 1.07163 1.17047 0.81867 0.84888 0.84237 1.90618 1.57006 1.72640 1.26585 0.92524 0.92285 0.93505 0.95651 0.95961 0.79266 0.93904 0.91709 0.91958 0.73806 0.83410 0.78507 0.74963 0.83656 0.90708 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.94 71.98 0.64 -4.26 16 2 C -0.09 -3.61 2.46 -10.80 -0.03 -3.64 16 3 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 4 C 0.16 7.23 5.65 86.38 0.49 7.72 16 5 N -0.74 -40.85 5.33 -343.46 -1.83 -42.68 16 6 C -0.25 -14.82 9.99 84.03 0.84 -13.98 16 7 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 8 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 9 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 10 Si 0.98 48.07 29.55 68.60 2.03 50.10 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.13 4.82 5.07 86.38 0.44 5.26 16 15 N -0.72 -25.01 5.20 -466.69 -2.42 -27.43 16 16 C 0.56 19.29 7.74 86.56 0.67 19.96 16 17 O -0.59 -23.05 16.41 -4.18 -0.07 -23.12 16 18 C -0.33 -8.34 5.92 -19.79 -0.12 -8.46 16 19 C 0.08 1.18 9.70 22.83 0.22 1.41 16 20 C -0.24 -1.09 9.99 21.99 0.22 -0.87 16 21 C 0.19 0.32 10.28 83.56 0.86 1.18 16 22 N -0.49 -5.39 2.98 -673.17 -2.00 -7.40 16 23 C 0.05 0.29 10.04 127.77 1.28 1.57 16 24 C 0.52 12.06 7.44 85.16 0.63 12.69 16 25 O -0.58 -17.99 13.70 -4.96 -0.07 -18.06 16 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 2.04 7.18 -2.39 -0.02 2.02 16 28 H 0.05 1.95 7.18 -2.39 -0.02 1.93 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.37 21.74 6.85 -92.71 -0.64 21.11 16 32 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.42 14.64 4.25 -92.78 -0.39 14.24 16 36 H 0.15 2.30 7.71 -2.91 -0.02 2.28 16 37 H 0.20 -0.73 8.06 -2.91 -0.02 -0.76 16 38 H 0.23 -2.54 7.79 -2.91 -0.02 -2.56 16 39 H 0.15 -0.80 7.70 -2.38 -0.02 -0.82 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -87.69 344.24 2.55 -85.14 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.02 Total: 30.62 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.62 Total: 14.43 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -5.98 Total: -139.12 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.14 Total: -41.17 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -87.69 2.55 -85.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698772589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.802 kcal (2) G-P(sol) polarization free energy of solvation -87.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds