Wall clock time and date at job start Tue Mar 31 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.53003 * 109.47146 * 119.99925 * 2 1 3 5 5 H 1.09007 * 109.47138 * 299.99776 * 4 2 1 6 6 C 1.53000 * 109.47305 * 180.02562 * 4 2 1 7 7 N 1.46508 * 109.47041 * 184.99880 * 6 4 2 8 8 C 1.34775 * 119.99960 * 179.97438 * 7 6 4 9 9 O 1.21567 * 119.99964 * 0.02562 * 8 7 6 10 10 C 1.47722 * 119.99624 * 179.97438 * 8 7 6 11 11 N 1.33016 * 120.17036 * 5.85200 * 10 8 7 12 12 C 1.31722 * 120.01498 * 180.02562 * 11 10 8 13 13 C 1.38804 * 120.34355 * 0.02562 * 12 11 10 14 14 N 1.32032 * 120.32335 * 359.97438 * 13 12 11 15 15 C 1.32829 * 119.98591 * 359.70878 * 14 13 12 16 16 N 1.38261 * 120.17330 * 180.30006 * 15 14 13 17 17 N 1.46498 * 109.47323 * 59.99494 * 4 2 1 18 18 C 1.36927 * 120.00588 * 275.00892 * 17 4 2 19 19 H 1.08008 * 119.99842 * 359.97438 * 18 17 4 20 20 C 1.38806 * 120.00476 * 180.02562 * 18 17 4 21 21 N 1.31622 * 119.99795 * 359.71456 * 20 18 17 22 22 Si 1.86802 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46846 * 179.71939 * 22 20 18 24 24 H 1.48491 * 109.47149 * 299.72022 * 22 20 18 25 25 H 1.48503 * 109.47091 * 59.72419 * 22 20 18 26 26 H 1.09003 * 109.47623 * 300.00156 * 1 2 3 27 27 H 1.09005 * 109.47075 * 60.00181 * 1 2 3 28 28 H 1.09004 * 109.47608 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47623 * 239.99844 * 2 1 3 30 30 H 1.09001 * 109.46690 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.46862 * 299.99708 * 3 2 1 32 32 H 1.08994 * 109.47106 * 60.00017 * 3 2 1 33 33 H 1.08993 * 109.46711 * 304.99609 * 6 4 2 34 34 H 1.08999 * 109.47055 * 64.99866 * 6 4 2 35 35 H 0.96997 * 119.99636 * 359.97438 * 7 6 4 36 36 H 1.08002 * 119.82902 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.83941 * 179.97438 * 13 12 11 38 38 H 0.97007 * 120.00605 * 203.09980 * 16 15 14 39 39 H 0.96998 * 120.00006 * 23.09362 * 16 15 14 40 40 H 0.97001 * 119.99390 * 94.99906 * 17 4 2 41 41 H 0.97002 * 120.00020 * 0.28542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7207 1.2496 7 7 4.0583 -1.5129 2.3811 8 6 5.3833 -1.6542 2.5829 9 8 6.1733 -1.1238 1.8262 10 6 5.8756 -2.4525 3.7241 11 7 5.0199 -3.1284 4.4858 12 6 5.4621 -3.8389 5.5030 13 6 6.8200 -3.8871 5.7870 14 7 7.6813 -3.2214 5.0398 15 6 7.2501 -2.5059 4.0071 16 7 8.1493 -1.8124 3.2183 17 7 1.5515 -2.1024 1.2494 18 6 0.3100 -2.3897 1.7504 19 1 -0.3091 -1.5980 2.1460 20 6 -0.1525 -3.6984 1.7510 21 7 0.6001 -4.6626 1.2648 22 14 -1.8460 -4.0903 2.4352 23 1 -2.1032 -5.5480 2.3149 24 1 -1.9062 -3.6934 3.8649 25 1 -2.8747 -3.3413 1.6697 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9335 -1.1548 0.3183 34 1 3.9328 0.3032 1.3394 35 1 3.4279 -1.9358 2.9850 36 1 4.7646 -4.3861 6.1198 37 1 7.1737 -4.4718 6.6232 38 1 7.8510 -1.0496 2.6986 39 1 9.0785 -2.0886 3.1847 40 1 2.1077 -2.8135 0.8944 41 1 1.4796 -4.4591 0.9098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698963555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:17 Heat of formation + Delta-G solvation = 22.352097 kcal Electronic energy + Delta-G solvation = -23776.051797 eV Core-core repulsion = 20305.306025 eV Total energy + Delta-G solvation = -3470.745772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.22923 -39.18148 -37.37066 -35.61034 -33.84989 -33.67974 -33.40758 -30.42024 -29.77700 -27.93909 -26.16936 -25.37094 -23.77755 -23.33480 -22.08119 -20.63229 -19.45734 -18.38211 -17.83665 -17.59282 -17.27904 -16.19004 -15.54124 -15.33982 -15.05184 -14.78761 -14.48229 -14.18458 -13.85421 -13.64394 -13.45967 -13.37367 -12.94514 -12.25772 -11.97465 -11.73259 -11.66406 -11.62042 -11.21997 -10.93836 -10.77281 -10.63079 -10.43373 -10.15639 -10.10875 -10.05892 -9.87450 -9.19246 -9.14981 -8.89478 -8.79548 -8.12645 -7.06626 -6.08942 -3.10374 0.50680 1.21199 2.84106 3.16631 3.50373 3.51564 3.54237 3.71619 3.84612 4.18288 4.29672 4.59903 4.65820 5.06645 5.21727 5.23754 5.26697 5.32021 5.51335 5.58074 5.72977 5.80823 5.90499 6.07564 6.16446 6.17738 6.30680 6.36826 6.46895 6.56477 6.58461 6.78294 6.94233 7.00465 7.19463 7.27458 7.49174 7.78023 7.80879 7.97328 8.38994 8.74772 9.19275 10.06255 10.20710 11.38104 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.004994 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.179969 B = 5604.875978 C = 7336.499665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.055 0.945 6 C 0.109 3.891 7 N -0.687 5.687 8 C 0.579 3.421 9 O -0.557 6.557 10 C -0.038 4.038 11 N -0.366 5.366 12 C -0.015 4.015 13 C 0.127 3.873 14 N -0.509 5.509 15 C 0.404 3.596 16 N -0.823 5.823 17 N -0.731 5.731 18 C -0.327 4.327 19 H 0.067 0.933 20 C -0.041 4.041 21 N -0.941 5.941 22 Si 1.075 2.925 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.296 1.296 26 H 0.041 0.959 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.421 0.579 36 H 0.174 0.826 37 H 0.174 0.826 38 H 0.425 0.575 39 H 0.400 0.600 40 H 0.368 0.632 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.105 6.484 6.047 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.065 3.935 5 H 0.073 0.927 6 C -0.015 4.015 7 N -0.337 5.337 8 C 0.364 3.636 9 O -0.437 6.437 10 C -0.186 4.186 11 N -0.083 5.083 12 C -0.180 4.180 13 C -0.038 4.038 14 N -0.232 5.232 15 C 0.162 3.838 16 N -0.373 5.373 17 N -0.374 5.374 18 C -0.458 4.458 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.586 5.586 22 Si 0.907 3.093 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.223 1.223 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.259 0.741 36 H 0.191 0.809 37 H 0.191 0.809 38 H 0.266 0.734 39 H 0.229 0.771 40 H 0.201 0.799 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.328 5.875 5.801 13.223 hybrid contribution 1.180 0.919 -0.246 1.516 sum 11.509 6.794 5.556 14.473 Atomic orbital electron populations 1.21809 0.94744 1.04015 0.98969 1.21719 0.97112 0.94406 0.99792 1.21940 1.00410 0.97297 1.01026 1.20480 0.88935 0.87895 0.96209 0.92708 1.21868 0.96055 0.94950 0.88623 1.45836 1.06343 1.51126 1.30414 1.17512 0.83131 0.79879 0.83070 1.90510 1.55266 1.50665 1.47261 1.21504 0.90327 1.05919 1.00900 1.68204 1.37083 1.01260 1.01729 1.23505 0.95518 1.01405 0.97573 1.23813 0.90714 0.92755 0.96488 1.68197 1.38462 1.11848 1.04678 1.19069 0.88159 0.88855 0.87760 1.42719 1.10747 1.35023 1.48802 1.42444 1.18339 1.01920 1.74661 1.19958 0.93550 0.95203 1.37057 0.91507 1.25672 1.05643 0.91463 1.01183 1.70876 1.11366 1.33290 1.43029 0.83301 0.74547 0.75998 0.75483 1.21190 1.22308 1.22346 0.94025 0.95023 0.89427 0.92063 0.93087 0.93473 0.93137 0.91694 0.91174 0.74052 0.80916 0.80937 0.73402 0.77051 0.79880 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.26 37.15 0.31 -2.21 16 2 C -0.11 -1.85 2.69 -90.62 -0.24 -2.10 16 3 C -0.15 -2.08 8.84 37.16 0.33 -1.75 16 4 C 0.18 3.27 2.18 -67.93 -0.15 3.12 16 5 H 0.05 1.07 8.08 -51.92 -0.42 0.65 16 6 C 0.11 1.86 4.73 -4.04 -0.02 1.84 16 7 N -0.69 -12.11 5.38 -61.29 -0.33 -12.43 16 8 C 0.58 10.01 7.78 -12.39 -0.10 9.92 16 9 O -0.56 -9.83 13.79 5.31 0.07 -9.76 16 10 C -0.04 -0.61 6.77 -82.65 -0.56 -1.17 16 11 N -0.37 -5.79 9.71 -9.49 -0.09 -5.88 16 12 C -0.01 -0.18 11.21 -17.39 -0.19 -0.38 16 13 C 0.13 1.34 11.22 -17.26 -0.19 1.15 16 14 N -0.51 -6.58 10.52 -11.99 -0.13 -6.70 16 15 C 0.40 5.77 7.77 -154.88 -1.20 4.57 16 16 N -0.82 -9.98 8.57 31.32 0.27 -9.71 16 17 N -0.73 -16.76 4.44 -53.42 -0.24 -16.99 16 18 C -0.33 -8.42 7.57 -15.07 -0.11 -8.54 16 19 H 0.07 1.71 7.40 -52.48 -0.39 1.32 16 20 C -0.04 -1.14 5.50 -17.43 -0.10 -1.24 16 21 N -0.94 -28.08 13.70 55.49 0.76 -27.32 16 22 Si 1.08 25.10 29.92 -169.99 -5.09 20.02 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.30 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.30 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 1.91 6.01 -51.93 -0.31 1.59 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.09 6.71 -51.93 -0.35 0.74 16 35 H 0.42 8.01 7.50 -40.82 -0.31 7.71 16 36 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.42 5.42 6.01 -40.82 -0.25 5.18 16 39 H 0.40 3.86 8.95 -40.82 -0.37 3.50 16 40 H 0.37 9.07 6.63 -40.82 -0.27 8.80 16 41 H 0.26 7.59 6.77 -40.82 -0.28 7.31 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -30.89 337.45 -7.37 -38.25 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -5.45 Total: 22.24 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.23 Total: 3.22 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: 0.24 Total: -79.05 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.89 -7.37 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698963555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.604 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds