Wall clock time and date at job start Tue Mar 31 2020 03:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.53003 * 109.47146 * 119.99925 * 2 1 3 5 5 H 1.09007 * 109.47138 * 299.99776 * 4 2 1 6 6 C 1.53000 * 109.47305 * 180.02562 * 4 2 1 7 7 N 1.46508 * 109.47041 * 184.99880 * 6 4 2 8 8 C 1.34775 * 119.99960 * 179.97438 * 7 6 4 9 9 O 1.21567 * 119.99964 * 0.02562 * 8 7 6 10 10 C 1.47722 * 119.99624 * 179.97438 * 8 7 6 11 11 N 1.33016 * 120.17036 * 5.85200 * 10 8 7 12 12 C 1.31722 * 120.01498 * 180.02562 * 11 10 8 13 13 C 1.38804 * 120.34355 * 0.02562 * 12 11 10 14 14 N 1.32032 * 120.32335 * 359.97438 * 13 12 11 15 15 C 1.32829 * 119.98591 * 359.70878 * 14 13 12 16 16 N 1.38261 * 120.17330 * 180.30006 * 15 14 13 17 17 N 1.46498 * 109.47323 * 59.99494 * 4 2 1 18 18 C 1.36927 * 120.00588 * 275.00892 * 17 4 2 19 19 H 1.08008 * 119.99842 * 359.97438 * 18 17 4 20 20 C 1.38806 * 120.00476 * 180.02562 * 18 17 4 21 21 N 1.31622 * 119.99795 * 359.71456 * 20 18 17 22 22 Si 1.86802 * 120.00254 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46846 * 179.71939 * 22 20 18 24 24 H 1.48491 * 109.47149 * 299.72022 * 22 20 18 25 25 H 1.48503 * 109.47091 * 59.72419 * 22 20 18 26 26 H 1.09003 * 109.47623 * 300.00156 * 1 2 3 27 27 H 1.09005 * 109.47075 * 60.00181 * 1 2 3 28 28 H 1.09004 * 109.47608 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47623 * 239.99844 * 2 1 3 30 30 H 1.09001 * 109.46690 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.46862 * 299.99708 * 3 2 1 32 32 H 1.08994 * 109.47106 * 60.00017 * 3 2 1 33 33 H 1.08993 * 109.46711 * 304.99609 * 6 4 2 34 34 H 1.08999 * 109.47055 * 64.99866 * 6 4 2 35 35 H 0.96997 * 119.99636 * 359.97438 * 7 6 4 36 36 H 1.08002 * 119.82902 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.83941 * 179.97438 * 13 12 11 38 38 H 0.97007 * 120.00605 * 203.09980 * 16 15 14 39 39 H 0.96998 * 120.00006 * 23.09362 * 16 15 14 40 40 H 0.97001 * 119.99390 * 94.99906 * 17 4 2 41 41 H 0.97002 * 120.00020 * 0.28542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7207 1.2496 7 7 4.0583 -1.5129 2.3811 8 6 5.3833 -1.6542 2.5829 9 8 6.1733 -1.1238 1.8262 10 6 5.8756 -2.4525 3.7241 11 7 5.0199 -3.1284 4.4858 12 6 5.4621 -3.8389 5.5030 13 6 6.8200 -3.8871 5.7870 14 7 7.6813 -3.2214 5.0398 15 6 7.2501 -2.5059 4.0071 16 7 8.1493 -1.8124 3.2183 17 7 1.5515 -2.1024 1.2494 18 6 0.3100 -2.3897 1.7504 19 1 -0.3091 -1.5980 2.1460 20 6 -0.1525 -3.6984 1.7510 21 7 0.6001 -4.6626 1.2648 22 14 -1.8460 -4.0903 2.4352 23 1 -2.1032 -5.5480 2.3149 24 1 -1.9062 -3.6934 3.8649 25 1 -2.8747 -3.3413 1.6697 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.9335 -1.1548 0.3183 34 1 3.9328 0.3032 1.3394 35 1 3.4279 -1.9358 2.9850 36 1 4.7646 -4.3861 6.1198 37 1 7.1737 -4.4718 6.6232 38 1 7.8510 -1.0496 2.6986 39 1 9.0785 -2.0886 3.1847 40 1 2.1077 -2.8135 0.8944 41 1 1.4796 -4.4591 0.9098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698963555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:15 Heat of formation + Delta-G solvation = -1.350058 kcal Electronic energy + Delta-G solvation = -23777.079599 eV Core-core repulsion = 20305.306025 eV Total energy + Delta-G solvation = -3471.773574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.28084 -40.47492 -38.87988 -36.67656 -35.35351 -35.08905 -34.70422 -32.05803 -30.98003 -29.41296 -27.49278 -26.57536 -25.40786 -24.60072 -23.54528 -21.95535 -20.88877 -19.56681 -19.35755 -18.84406 -18.54569 -17.37451 -16.83970 -16.76541 -16.32630 -16.12534 -15.82827 -15.48631 -15.37127 -15.17079 -14.90635 -14.51908 -14.25307 -13.65776 -13.54914 -12.90501 -12.83151 -12.77916 -12.65971 -12.65752 -12.47973 -11.97072 -11.90936 -11.64344 -11.57231 -11.49652 -11.37091 -11.15266 -10.80432 -10.20851 -10.14161 -9.13930 -9.03597 -8.24963 -5.19697 -0.51897 0.21000 1.62296 1.62976 1.71177 1.86511 2.00162 2.44160 2.76953 2.78823 3.12011 3.36502 3.50374 3.57608 3.72189 3.81220 4.10602 4.19489 4.22838 4.25148 4.36229 4.44063 4.56553 4.64967 4.86403 4.90514 4.98656 5.10154 5.19233 5.23826 5.28039 5.40391 5.57031 5.70384 5.74550 5.93733 6.24903 6.36451 6.55958 6.59448 6.95110 7.06666 7.16745 8.06572 8.19563 9.25366 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.004994 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.179969 B = 5604.875978 C = 7336.499665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.177 3.823 5 H 0.052 0.948 6 C 0.119 3.881 7 N -0.694 5.694 8 C 0.575 3.425 9 O -0.568 6.568 10 C -0.077 4.077 11 N -0.400 5.400 12 C -0.018 4.018 13 C 0.149 3.851 14 N -0.515 5.515 15 C 0.398 3.602 16 N -0.815 5.815 17 N -0.738 5.738 18 C -0.303 4.303 19 H 0.070 0.930 20 C -0.104 4.104 21 N -0.979 5.979 22 Si 1.119 2.881 23 H -0.300 1.300 24 H -0.279 1.279 25 H -0.282 1.282 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.413 0.587 36 H 0.202 0.798 37 H 0.225 0.775 38 H 0.422 0.578 39 H 0.411 0.589 40 H 0.357 0.643 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.655 7.496 7.464 15.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.068 3.932 5 H 0.070 0.930 6 C -0.005 4.005 7 N -0.343 5.343 8 C 0.362 3.638 9 O -0.449 6.449 10 C -0.223 4.223 11 N -0.116 5.116 12 C -0.185 4.185 13 C -0.017 4.017 14 N -0.239 5.239 15 C 0.156 3.844 16 N -0.365 5.365 17 N -0.380 5.380 18 C -0.434 4.434 19 H 0.088 0.912 20 C -0.295 4.295 21 N -0.628 5.628 22 Si 0.946 3.054 23 H -0.227 1.227 24 H -0.205 1.205 25 H -0.208 1.208 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.219 0.781 37 H 0.241 0.759 38 H 0.262 0.738 39 H 0.243 0.757 40 H 0.188 0.812 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.923 6.985 7.178 14.820 hybrid contribution 1.087 0.622 -0.591 1.385 sum 12.011 7.607 6.587 15.669 Atomic orbital electron populations 1.21714 0.95414 1.01673 1.00251 1.21607 0.96437 0.96477 0.98095 1.21849 1.01045 0.94639 1.02250 1.20631 0.90045 0.85716 0.96821 0.93044 1.21768 0.94624 0.95880 0.88232 1.45834 1.06542 1.51528 1.30372 1.17810 0.82754 0.79763 0.83488 1.90485 1.55316 1.51257 1.47872 1.21266 0.91216 1.08001 1.01770 1.68122 1.38155 1.02317 1.03039 1.24137 0.97090 1.00585 0.96685 1.24642 0.89857 0.90845 0.96317 1.68354 1.38830 1.12098 1.04587 1.19158 0.87822 0.89082 0.88328 1.42664 1.11141 1.34469 1.48178 1.42561 1.17461 1.03499 1.74447 1.20190 0.94044 0.94849 1.34354 0.91196 1.26856 1.08308 0.92003 1.02321 1.70988 1.11431 1.34209 1.46152 0.82717 0.71673 0.75039 0.76007 1.22688 1.20504 1.20804 0.93608 0.92883 0.93420 0.93130 0.92048 0.91855 0.92315 0.92724 0.89194 0.75003 0.78134 0.75901 0.73772 0.75708 0.81156 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.26 71.98 0.59 -4.12 16 2 C -0.10 -3.48 2.69 -10.79 -0.03 -3.51 16 3 C -0.14 -3.55 8.84 71.98 0.64 -2.91 16 4 C 0.18 6.57 2.18 44.99 0.10 6.67 16 5 H 0.05 1.97 8.08 -2.38 -0.02 1.95 16 6 C 0.12 4.05 4.73 86.38 0.41 4.46 16 7 N -0.69 -24.99 5.38 -466.09 -2.51 -27.50 16 8 C 0.58 20.29 7.78 86.75 0.68 20.97 16 9 O -0.57 -20.28 13.79 -3.93 -0.05 -20.33 16 10 C -0.08 -2.48 6.77 42.01 0.28 -2.20 16 11 N -0.40 -12.58 9.71 -183.94 -1.79 -14.37 16 12 C -0.02 -0.40 11.21 84.84 0.95 0.55 16 13 C 0.15 2.68 11.22 84.80 0.95 3.63 16 14 N -0.52 -12.25 10.52 -191.86 -2.02 -14.27 16 15 C 0.40 11.10 7.77 133.51 1.04 12.14 16 16 N -0.81 -19.35 8.57 -54.83 -0.47 -19.82 16 17 N -0.74 -34.62 4.44 -322.94 -1.43 -36.06 16 18 C -0.30 -15.79 7.57 84.03 0.64 -15.16 16 19 H 0.07 3.56 7.40 -2.91 -0.02 3.54 16 20 C -0.10 -5.80 5.50 84.86 0.47 -5.34 16 21 N -0.98 -60.29 13.70 21.65 0.30 -60.00 16 22 Si 1.12 51.08 29.92 68.60 2.05 53.14 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.05 2.07 6.01 -2.38 -0.01 2.05 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 2.69 6.71 -2.39 -0.02 2.68 16 35 H 0.41 16.24 7.50 -92.71 -0.70 15.55 16 36 H 0.20 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.42 10.73 6.01 -92.70 -0.56 10.17 16 39 H 0.41 7.58 8.95 -92.71 -0.83 6.75 16 40 H 0.36 18.34 6.63 -92.71 -0.61 17.73 16 41 H 0.24 14.98 6.77 -92.71 -0.63 14.35 16 Total: -1.00 -68.85 337.45 -0.66 -69.51 By element: Atomic # 1 Polarization: 55.95 SS G_CDS: -1.45 Total: 54.50 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.71 Total: 15.18 kcal Atomic # 7 Polarization: -164.08 SS G_CDS: -7.92 Total: -172.00 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.14 kcal Total: -68.85 -0.66 -69.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698963555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.164 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds