Wall clock time and date at job start Tue Mar 31 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47070 * 120.00173 * 2 1 3 5 5 N 1.46501 * 109.47493 * 175.00342 * 4 2 1 6 6 C 1.36932 * 120.00404 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99827 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00175 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99932 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47549 * 90.00042 * 10 8 6 12 12 H 1.48498 * 109.47120 * 210.00067 * 10 8 6 13 13 H 1.48503 * 109.47389 * 330.00240 * 10 8 6 14 14 N 1.46501 * 109.47217 * 239.99961 * 2 1 3 15 15 C 1.34784 * 119.99794 * 85.00272 * 14 2 1 16 16 O 1.21276 * 120.00051 * 0.02562 * 15 14 2 17 17 C 1.50699 * 119.99728 * 179.97438 * 15 14 2 18 18 O 1.42899 * 109.46785 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99778 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.46972 * 180.02562 * 19 18 17 21 21 C 1.38654 * 120.79058 * 269.72293 * 20 19 18 22 22 C 1.38199 * 119.16218 * 179.80010 * 21 20 19 23 23 N 1.31872 * 120.76598 * 0.48658 * 22 21 20 24 24 C 1.31867 * 121.72568 * 359.73700 * 23 22 21 25 25 C 1.38211 * 120.76480 * 0.03137 * 24 23 22 26 26 H 1.09000 * 109.46859 * 60.00009 * 1 2 3 27 27 H 1.09004 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47365 * 299.99946 * 1 2 3 29 29 H 1.09001 * 109.47165 * 295.00348 * 4 2 1 30 30 H 1.08997 * 109.47239 * 54.99757 * 4 2 1 31 31 H 0.96998 * 119.99527 * 359.97438 * 5 4 2 32 32 H 0.96999 * 119.99749 * 179.97438 * 9 8 6 33 33 H 0.96996 * 120.00318 * 264.99989 * 14 2 1 34 34 H 1.08997 * 109.47198 * 59.99898 * 17 15 14 35 35 H 1.08997 * 109.47040 * 299.99932 * 17 15 14 36 36 H 1.09000 * 109.47187 * 300.00233 * 19 18 17 37 37 H 1.09001 * 109.46558 * 60.00281 * 19 18 17 38 38 H 1.08000 * 120.41963 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.61842 * 180.20536 * 22 21 20 40 40 H 1.07994 * 119.62246 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.42046 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2073 7 1 3.6467 -1.8432 3.0521 8 6 5.5672 -1.5380 2.1515 9 7 6.2216 -1.0454 1.1212 10 14 6.4999 -2.3728 3.5380 11 1 6.6316 -3.8224 3.2435 12 1 7.8506 -1.7679 3.6605 13 1 5.7591 -2.1920 4.8122 14 7 2.0183 -0.6906 -1.1962 15 6 2.1471 -0.0182 -2.3572 16 8 1.8592 1.1586 -2.4115 17 6 2.6500 -0.7285 -3.5874 18 8 2.6975 0.1896 -4.6815 19 6 3.1641 -0.3860 -5.9034 20 6 3.1738 0.6659 -6.9826 21 6 2.0620 0.8689 -7.7858 22 6 2.1062 1.8456 -8.7626 23 7 3.1919 2.5727 -8.9409 24 6 4.2689 2.4041 -8.1989 25 6 4.2967 1.4496 -7.1997 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7515 -0.1584 2.1370 30 1 1.6053 -1.7198 1.2951 31 1 3.9823 -0.4628 0.4317 32 1 7.1883 -1.1150 1.0824 33 1 2.2490 -1.6317 -1.1526 34 1 1.9778 -1.5508 -3.8325 35 1 3.6493 -1.1202 -3.3978 36 1 4.1743 -0.7700 -5.7617 37 1 2.5030 -1.2016 -6.1964 38 1 1.1717 0.2733 -7.6480 39 1 1.2432 2.0123 -9.3902 40 1 5.1393 3.0188 -8.3741 41 1 5.1819 1.3160 -6.5956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699426722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:15 Heat of formation + Delta-G solvation = -34.547522 kcal Electronic energy + Delta-G solvation = -22458.866836 eV Core-core repulsion = 18953.360961 eV Total energy + Delta-G solvation = -3505.505876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40011 -39.61079 -37.76748 -36.05399 -33.66691 -33.42361 -31.53391 -31.43526 -30.12259 -28.24895 -26.30980 -25.65886 -23.69711 -22.72530 -22.24391 -21.11317 -20.13661 -17.63301 -17.23303 -16.89682 -16.79008 -16.44736 -15.91487 -15.80562 -15.57466 -14.79473 -14.39767 -14.10933 -13.96421 -13.84960 -13.65224 -13.33335 -13.05435 -12.55151 -12.37492 -12.23866 -12.05380 -11.92462 -11.74119 -11.59472 -10.93925 -10.87486 -10.49283 -10.09571 -10.02122 -9.91249 -9.78893 -9.72256 -9.49759 -9.36780 -8.96542 -8.73192 -7.01180 -5.82991 -3.12892 0.89656 0.92061 2.86190 2.95896 3.38669 3.44489 3.46235 3.59364 4.01918 4.24489 4.44872 4.52075 4.55540 4.80273 4.88280 4.90817 5.02975 5.09925 5.12274 5.23177 5.29100 5.38802 5.47897 5.49843 5.55510 5.63096 5.71652 5.98990 6.06659 6.07184 6.15318 6.36941 6.44186 6.45322 6.66297 6.78356 6.94569 7.63498 7.73044 7.82071 8.34951 8.51361 9.46808 10.02498 10.37980 11.39352 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.002869 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.411987 B = 9756.878450 C =10881.914202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.243 4.243 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.931 5.931 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.710 5.710 15 C 0.516 3.484 16 O -0.528 6.528 17 C 0.043 3.957 18 O -0.355 6.355 19 C 0.098 3.902 20 C -0.042 4.042 21 C -0.151 4.151 22 C 0.094 3.906 23 N -0.484 5.484 24 C 0.096 3.904 25 C -0.149 4.149 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.386 0.614 32 H 0.255 0.745 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 -0.936 -17.023 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.374 4.374 7 H 0.089 0.911 8 C -0.209 4.209 9 N -0.580 5.580 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.362 5.362 15 C 0.301 3.699 16 O -0.404 6.404 17 C -0.037 4.037 18 O -0.273 6.273 19 C 0.021 3.979 20 C -0.051 4.051 21 C -0.171 4.171 22 C -0.063 4.063 23 N -0.193 5.193 24 C -0.061 4.061 25 C -0.169 4.169 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.239 0.761 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.154 0.846 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.178 0.676 -17.529 19.798 hybrid contribution 0.992 -1.784 1.282 2.410 sum -8.186 -1.108 -16.248 18.227 Atomic orbital electron populations 1.22104 0.95466 1.01851 1.02216 1.21245 0.93343 0.98040 0.84290 0.89490 1.20991 0.86846 0.96983 0.93571 1.42364 0.99751 1.70322 1.25277 1.19222 0.89440 1.29496 0.99253 0.91107 1.24758 0.96448 1.01536 0.98123 1.69667 1.07276 1.50758 1.30259 0.86178 0.79410 0.78931 0.81561 1.21721 1.21756 1.20746 1.45861 1.66955 1.14428 1.09005 1.20061 0.78208 0.87442 0.84237 1.90707 1.49207 1.15636 1.84843 1.22271 1.02343 0.92354 0.86742 1.88079 1.86984 1.35302 1.16936 1.21367 0.99876 0.93308 0.83322 1.19989 0.93908 0.96274 0.94898 1.22085 0.98637 0.99741 0.96667 1.22759 0.96141 0.91539 0.95864 1.67662 1.00171 1.25141 1.26367 1.22789 0.96339 0.95591 0.91394 1.22154 0.99441 0.96261 0.99026 0.92433 0.92559 0.91588 0.94787 0.95727 0.78012 0.93468 0.76122 0.90358 0.89533 0.91466 0.91760 0.84623 0.82614 0.82488 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 37.16 0.35 -1.78 16 2 C 0.14 2.25 2.73 -67.93 -0.19 2.06 16 3 H 0.09 1.67 7.58 -51.93 -0.39 1.27 16 4 C 0.14 2.74 5.82 -4.04 -0.02 2.71 16 5 N -0.73 -17.81 5.43 -59.91 -0.33 -18.13 16 6 C -0.24 -6.58 9.99 -15.06 -0.15 -6.74 16 7 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 8 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 10 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 N -0.71 -11.01 4.52 -53.81 -0.24 -11.26 16 15 C 0.52 8.49 7.87 -10.98 -0.09 8.41 16 16 O -0.53 -10.90 16.16 -14.35 -0.23 -11.13 16 17 C 0.04 0.54 6.42 36.01 0.23 0.77 16 18 O -0.35 -4.99 9.86 -55.14 -0.54 -5.53 16 19 C 0.10 0.98 6.11 36.01 0.22 1.20 16 20 C -0.04 -0.45 5.55 -104.32 -0.58 -1.03 16 21 C -0.15 -1.46 9.82 -39.44 -0.39 -1.84 16 22 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 23 N -0.48 -5.55 10.36 -13.25 -0.14 -5.69 16 24 C 0.10 0.98 11.18 -17.55 -0.20 0.78 16 25 C -0.15 -1.53 9.82 -39.44 -0.39 -1.92 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.39 10.03 7.33 -40.82 -0.30 9.73 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.40 5.68 8.60 -40.82 -0.35 5.33 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -34.94 356.82 -7.97 -42.91 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.08 Total: 10.48 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.48 Total: 2.90 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.02 Total: -61.88 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.78 Total: -16.66 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.94 -7.97 -42.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699426722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.362 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds