Wall clock time and date at job start Tue Mar 31 2020 02:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47350 * 2 1 4 4 C 1.52998 * 109.47070 * 120.00173 * 2 1 3 5 5 N 1.46501 * 109.47493 * 175.00342 * 4 2 1 6 6 C 1.36932 * 120.00404 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99827 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00175 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99932 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47549 * 90.00042 * 10 8 6 12 12 H 1.48498 * 109.47120 * 210.00067 * 10 8 6 13 13 H 1.48503 * 109.47389 * 330.00240 * 10 8 6 14 14 N 1.46501 * 109.47217 * 239.99961 * 2 1 3 15 15 C 1.34784 * 119.99794 * 85.00272 * 14 2 1 16 16 O 1.21276 * 120.00051 * 0.02562 * 15 14 2 17 17 C 1.50699 * 119.99728 * 179.97438 * 15 14 2 18 18 O 1.42899 * 109.46785 * 179.97438 * 17 15 14 19 19 C 1.42905 * 113.99778 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.46972 * 180.02562 * 19 18 17 21 21 C 1.38654 * 120.79058 * 269.72293 * 20 19 18 22 22 C 1.38199 * 119.16218 * 179.80010 * 21 20 19 23 23 N 1.31872 * 120.76598 * 0.48658 * 22 21 20 24 24 C 1.31867 * 121.72568 * 359.73700 * 23 22 21 25 25 C 1.38211 * 120.76480 * 0.03137 * 24 23 22 26 26 H 1.09000 * 109.46859 * 60.00009 * 1 2 3 27 27 H 1.09004 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47365 * 299.99946 * 1 2 3 29 29 H 1.09001 * 109.47165 * 295.00348 * 4 2 1 30 30 H 1.08997 * 109.47239 * 54.99757 * 4 2 1 31 31 H 0.96998 * 119.99527 * 359.97438 * 5 4 2 32 32 H 0.96999 * 119.99749 * 179.97438 * 9 8 6 33 33 H 0.96996 * 120.00318 * 264.99989 * 14 2 1 34 34 H 1.08997 * 109.47198 * 59.99898 * 17 15 14 35 35 H 1.08997 * 109.47040 * 299.99932 * 17 15 14 36 36 H 1.09000 * 109.47187 * 300.00233 * 19 18 17 37 37 H 1.09001 * 109.46558 * 60.00281 * 19 18 17 38 38 H 1.08000 * 120.41963 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.61842 * 180.20536 * 22 21 20 40 40 H 1.07994 * 119.62246 * 180.02562 * 24 23 22 41 41 H 1.07997 * 120.42046 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4379 2.2073 7 1 3.6467 -1.8432 3.0521 8 6 5.5672 -1.5380 2.1515 9 7 6.2216 -1.0454 1.1212 10 14 6.4999 -2.3728 3.5380 11 1 6.6316 -3.8224 3.2435 12 1 7.8506 -1.7679 3.6605 13 1 5.7591 -2.1920 4.8122 14 7 2.0183 -0.6906 -1.1962 15 6 2.1471 -0.0182 -2.3572 16 8 1.8592 1.1586 -2.4115 17 6 2.6500 -0.7285 -3.5874 18 8 2.6975 0.1896 -4.6815 19 6 3.1641 -0.3860 -5.9034 20 6 3.1738 0.6659 -6.9826 21 6 2.0620 0.8689 -7.7858 22 6 2.1062 1.8456 -8.7626 23 7 3.1919 2.5727 -8.9409 24 6 4.2689 2.4041 -8.1989 25 6 4.2967 1.4496 -7.1997 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7515 -0.1584 2.1370 30 1 1.6053 -1.7198 1.2951 31 1 3.9823 -0.4628 0.4317 32 1 7.1883 -1.1150 1.0824 33 1 2.2490 -1.6317 -1.1526 34 1 1.9778 -1.5508 -3.8325 35 1 3.6493 -1.1202 -3.3978 36 1 4.1743 -0.7700 -5.7617 37 1 2.5030 -1.2016 -6.1964 38 1 1.1717 0.2733 -7.6480 39 1 1.2432 2.0123 -9.3902 40 1 5.1393 3.0188 -8.3741 41 1 5.1819 1.3160 -6.5956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699426722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:14 Heat of formation + Delta-G solvation = -59.228185 kcal Electronic energy + Delta-G solvation = -22459.937070 eV Core-core repulsion = 18953.360961 eV Total energy + Delta-G solvation = -3506.576109 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17951 -40.84583 -38.77090 -37.54865 -35.44913 -34.22744 -33.14314 -32.15862 -31.73961 -29.20264 -27.44020 -27.11869 -24.52573 -24.43067 -22.99438 -22.48354 -21.45600 -19.26501 -18.53090 -17.88198 -17.70597 -17.46345 -16.93714 -16.79413 -16.60173 -16.49440 -15.58886 -15.44832 -15.16151 -15.11584 -14.74719 -14.55038 -14.14023 -13.88326 -13.64223 -13.62806 -13.19125 -13.06557 -12.78675 -12.76492 -12.62921 -12.46213 -12.14796 -11.89789 -11.70599 -11.01509 -10.90632 -10.78219 -10.67198 -10.48632 -10.10105 -10.05958 -9.01109 -7.94259 -5.23775 0.12150 0.18638 1.49178 1.50492 1.58732 1.60925 1.90155 2.56394 2.74638 3.15020 3.40212 3.57127 3.65885 3.77584 3.80635 3.90330 4.05567 4.11820 4.18823 4.20894 4.28203 4.32492 4.42686 4.44779 4.52477 4.68974 4.80511 4.87481 4.87589 4.94780 4.97695 5.12386 5.30991 5.33795 5.51308 5.56975 5.74153 5.97209 6.26652 6.59732 6.98309 7.26828 7.34068 8.07324 8.31147 9.28760 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.002869 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.411987 B = 9756.878450 C =10881.914202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.141 3.859 3 H 0.054 0.946 4 C 0.146 3.854 5 N -0.744 5.744 6 C -0.244 4.244 7 H 0.080 0.920 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.271 1.271 14 N -0.703 5.703 15 C 0.509 3.491 16 O -0.578 6.578 17 C 0.049 3.951 18 O -0.389 6.389 19 C 0.096 3.904 20 C -0.061 4.061 21 C -0.154 4.154 22 C 0.084 3.916 23 N -0.510 5.510 24 C 0.084 3.916 25 C -0.162 4.162 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.374 0.626 32 H 0.250 0.750 33 H 0.413 0.587 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 -2.665 -16.893 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 H 0.073 0.927 4 C 0.019 3.981 5 N -0.388 5.388 6 C -0.375 4.375 7 H 0.097 0.903 8 C -0.266 4.266 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.196 1.196 14 N -0.356 5.356 15 C 0.296 3.704 16 O -0.458 6.458 17 C -0.030 4.030 18 O -0.308 6.308 19 C 0.020 3.980 20 C -0.069 4.069 21 C -0.174 4.174 22 C -0.072 4.072 23 N -0.220 5.220 24 C -0.072 4.072 25 C -0.181 4.181 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.206 0.794 32 H 0.059 0.941 33 H 0.249 0.751 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.176 0.824 39 H 0.198 0.802 40 H 0.193 0.807 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.384 -1.094 -17.380 20.276 hybrid contribution 1.283 -1.221 1.237 2.160 sum -9.102 -2.314 -16.143 18.677 Atomic orbital electron populations 1.22000 0.92603 1.03313 1.02519 1.21083 0.95390 0.96016 0.83920 0.92723 1.21138 0.84018 0.98175 0.94772 1.42546 1.01878 1.69996 1.24336 1.19635 0.89871 1.28308 0.99714 0.90259 1.25550 0.97544 1.03041 1.00514 1.69823 1.07018 1.52759 1.32253 0.85148 0.77517 0.77883 0.79215 1.21103 1.22719 1.19595 1.45821 1.66456 1.14718 1.08595 1.20840 0.77195 0.87005 0.85398 1.90679 1.51520 1.17858 1.85703 1.22300 1.03595 0.92294 0.84826 1.88027 1.87513 1.36966 1.18308 1.21569 1.01150 0.93614 0.81659 1.20281 0.94388 0.96792 0.95456 1.22369 0.99100 0.99748 0.96158 1.23238 0.96485 0.91253 0.96224 1.67692 1.00993 1.26081 1.27185 1.23140 0.96840 0.95919 0.91331 1.22364 1.00014 0.96458 0.99303 0.93179 0.90431 0.90270 0.94539 0.93698 0.79394 0.94107 0.75076 0.86281 0.88492 0.90363 0.88991 0.82446 0.80173 0.80698 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.48 71.98 0.68 -2.99 16 2 C 0.14 4.59 2.73 44.99 0.12 4.71 16 3 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 4 C 0.15 5.33 5.82 86.38 0.50 5.83 16 5 N -0.74 -35.85 5.43 -343.46 -1.87 -37.72 16 6 C -0.24 -12.98 9.99 84.03 0.84 -12.14 16 7 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 8 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 9 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 10 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 14 N -0.70 -21.19 4.52 -442.53 -2.00 -23.19 16 15 C 0.51 16.55 7.87 87.66 0.69 17.24 16 16 O -0.58 -24.35 16.16 16.02 0.26 -24.09 16 17 C 0.05 1.14 6.42 71.24 0.46 1.60 16 18 O -0.39 -10.53 9.86 -129.94 -1.28 -11.81 16 19 C 0.10 1.75 6.11 71.24 0.44 2.18 16 20 C -0.06 -1.24 5.55 -19.67 -0.11 -1.35 16 21 C -0.15 -2.77 9.82 22.36 0.22 -2.55 16 22 C 0.08 1.58 11.18 84.68 0.95 2.52 16 23 N -0.51 -11.54 10.36 -195.84 -2.03 -13.57 16 24 C 0.08 1.71 11.18 84.68 0.95 2.66 16 25 C -0.16 -3.31 9.82 22.36 0.22 -3.09 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.37 19.62 7.33 -92.71 -0.68 18.94 16 32 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 33 H 0.41 10.94 8.60 -92.71 -0.80 10.15 16 34 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.18 2.65 8.06 -2.91 -0.02 2.62 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -75.99 356.82 1.38 -74.61 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.44 Total: 35.45 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 6.42 Total: 10.99 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -5.61 Total: -131.93 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.02 Total: -35.90 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.99 1.38 -74.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699426722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.386 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds