Wall clock time and date at job start Tue Mar 31 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.37410 * 2 1 4 4 N 1.46498 * 109.46954 * 302.18768 * 3 2 1 5 5 C 1.36936 * 120.00108 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00053 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.00401 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00335 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99673 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47181 * 89.99275 * 9 7 5 11 11 H 1.48494 * 109.46964 * 209.99630 * 9 7 5 12 12 H 1.48502 * 109.47056 * 329.99453 * 9 7 5 13 13 C 1.54615 * 110.32812 * 237.80647 * 2 1 3 14 14 C 1.54595 * 102.91314 * 262.81115 * 13 2 1 15 15 N 1.48119 * 103.42276 * 322.86405 * 14 13 2 16 16 C 1.34773 * 127.03433 * 219.29036 * 15 14 13 17 17 O 1.21280 * 120.00240 * 179.68699 * 16 15 14 18 18 C 1.50704 * 120.00008 * 359.68188 * 16 15 14 19 19 C 1.50701 * 109.47042 * 180.02562 * 18 16 15 20 20 N 1.33244 * 125.52794 * 89.99904 * 19 18 16 21 21 C 1.30830 * 109.82956 * 180.02562 * 20 19 18 22 22 N 1.34433 * 108.07650 * 0.27201 * 21 20 19 23 23 H 0.96996 * 126.81783 * 179.74136 * 22 21 20 24 24 N 1.30709 * 125.52680 * 270.04339 * 19 18 16 25 25 C 1.47483 * 105.93192 * 39.02521 * 15 14 13 26 26 H 1.09005 * 109.46986 * 297.81513 * 1 2 3 27 27 H 1.09003 * 109.46734 * 57.81108 * 1 2 3 28 28 H 1.09001 * 109.47310 * 177.81211 * 1 2 3 29 29 H 1.08995 * 109.47276 * 62.18797 * 3 2 1 30 30 H 1.08998 * 109.46990 * 182.19097 * 3 2 1 31 31 H 0.97000 * 120.00041 * 0.02562 * 4 3 2 32 32 H 0.96997 * 119.99948 * 180.02562 * 8 7 5 33 33 H 1.09007 * 110.73904 * 21.29799 * 13 2 1 34 34 H 1.09003 * 110.74030 * 144.43639 * 13 2 1 35 35 H 1.09010 * 110.61565 * 204.35309 * 14 13 2 36 36 H 1.08998 * 110.55101 * 81.35037 * 14 13 2 37 37 H 1.09000 * 109.46867 * 60.00181 * 18 16 15 38 38 H 1.08999 * 109.47452 * 300.00248 * 18 16 15 39 39 H 1.08002 * 125.95754 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.91250 * 94.13546 * 25 15 14 41 41 H 1.09000 * 109.91638 * 215.41978 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 7 1.5429 2.1482 -1.1689 5 6 1.8862 3.4568 -1.3805 6 1 2.5405 3.9626 -0.6858 7 6 1.3942 4.1332 -2.4884 8 7 1.7245 5.3908 -2.6919 9 14 0.2631 3.2582 -3.6904 10 1 -1.1477 3.4388 -3.2635 11 1 0.4465 3.8302 -5.0484 12 1 0.5914 1.8102 -3.7146 13 6 2.0671 -0.7725 -1.2269 14 6 2.3639 -2.1753 -0.6491 15 7 2.8803 -1.8857 0.7086 16 6 3.8922 -2.5107 1.3425 17 8 4.2150 -2.1635 2.4588 18 6 4.6226 -3.6411 0.6643 19 6 5.6998 -4.1638 1.5794 20 7 5.5500 -5.1407 2.4730 21 6 6.6798 -5.3459 3.0999 22 7 7.5892 -4.4834 2.6138 23 1 8.5154 -4.3989 2.8891 24 7 6.9326 -3.7317 1.6258 25 6 2.0650 -0.7693 1.2222 26 1 -0.3633 0.4796 0.9090 27 1 -0.3633 0.5475 -0.8698 28 1 -0.3634 -1.0269 -0.0392 29 1 1.7397 1.9418 0.9089 30 1 3.1518 1.4173 -0.0393 31 1 0.9550 1.6941 -1.7927 32 1 1.3804 5.8635 -3.4659 33 1 1.3105 -0.8277 -2.0098 34 1 2.9788 -0.3101 -1.6054 35 1 3.1194 -2.6848 -1.2474 36 1 1.4507 -2.7679 -0.5951 37 1 5.0740 -3.2795 -0.2595 38 1 3.9200 -4.4425 0.4360 39 1 6.8505 -6.0771 3.8763 40 1 1.2330 -1.1570 1.8101 41 1 2.6808 -0.1109 1.8349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699853629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:12 Heat of formation + Delta-G solvation = 70.829016 kcal Electronic energy + Delta-G solvation = -23328.789719 eV Core-core repulsion = 19860.146064 eV Total energy + Delta-G solvation = -3468.643655 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.36412 -40.18268 -38.14816 -34.97863 -33.58575 -32.72859 -31.92418 -30.74961 -29.59338 -29.34487 -26.58009 -25.59751 -23.30897 -23.02706 -22.06962 -21.03611 -19.32899 -18.93193 -18.49253 -17.70017 -17.02651 -16.28512 -15.72736 -15.44686 -15.16665 -14.54109 -14.39618 -13.96409 -13.87993 -13.52294 -13.38380 -13.18278 -12.51091 -12.48807 -12.39456 -12.24681 -12.17894 -11.88976 -11.51712 -11.35229 -10.88761 -10.66138 -10.46020 -10.43030 -10.33792 -10.31533 -10.11495 -10.01407 -9.73834 -9.56069 -8.89196 -8.70387 -7.21650 -5.75571 -3.10830 1.34213 2.35130 2.49903 2.59280 3.05417 3.35228 3.37729 3.44425 3.79588 4.33024 4.37042 4.58918 4.61963 4.65174 4.80766 4.95935 5.10031 5.21051 5.23501 5.32515 5.40126 5.55519 5.61261 5.71132 5.79758 5.86613 5.88402 5.93313 6.07930 6.10132 6.22379 6.27918 6.38433 6.48221 6.68365 6.73920 6.76317 7.49075 7.79670 8.01407 8.10623 8.43415 9.22736 9.94571 10.14883 11.43103 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.003088 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.485950 B = 9065.355936 C = 9333.686137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C 0.172 3.828 4 N -0.752 5.752 5 C -0.242 4.242 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.124 4.124 14 C 0.097 3.903 15 N -0.618 5.618 16 C 0.541 3.459 17 O -0.534 6.534 18 C -0.045 4.045 19 C 0.249 3.751 20 N -0.535 5.535 21 C 0.262 3.738 22 N -0.483 5.483 23 H 0.442 0.558 24 N -0.301 5.301 25 C 0.120 3.880 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.361 0.639 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.223 0.777 40 H 0.068 0.932 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 -25.300 7.705 27.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 C 0.044 3.956 4 N -0.398 5.398 5 C -0.372 4.372 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.162 4.162 14 C -0.026 4.026 15 N -0.352 5.352 16 C 0.328 3.672 17 O -0.410 6.410 18 C -0.087 4.087 19 C -0.034 4.034 20 N -0.263 5.263 21 C -0.038 4.038 22 N -0.202 5.202 23 H 0.287 0.713 24 N -0.130 5.130 25 C -0.003 4.003 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.195 0.805 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.239 0.761 40 H 0.087 0.913 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.274 -24.550 7.984 26.567 hybrid contribution -0.120 -0.545 -0.565 0.794 sum 6.154 -25.095 7.419 26.883 Atomic orbital electron populations 1.21823 0.93393 1.00907 1.02970 1.21721 0.96338 0.96629 0.93890 1.20677 0.96199 0.87768 0.90929 1.42697 1.58950 1.11394 1.26798 1.19068 1.24672 0.85917 1.07511 0.89286 1.24669 1.00400 0.95814 0.98350 1.69699 1.48941 1.09355 1.30319 0.86565 0.81460 0.79069 0.81547 1.21082 1.21781 1.20297 1.22766 1.02698 0.93529 0.97212 1.22608 0.99188 0.98284 0.82502 1.48723 1.33337 1.35248 1.17929 1.19720 0.78941 0.82827 0.85733 1.90737 1.65374 1.65649 1.19238 1.19856 0.94221 0.97809 0.96815 1.23292 0.91770 0.92531 0.95827 1.70345 1.25231 1.19735 1.11030 1.26061 0.84730 0.94558 0.98420 1.48083 1.14095 1.28187 1.29791 0.71267 1.78016 1.08268 1.17196 1.09522 1.22115 0.94262 0.87751 0.96186 0.92180 0.91720 0.93058 0.95272 0.95372 0.80543 0.93086 0.89966 0.89845 0.90149 0.90667 0.86365 0.86058 0.76084 0.91338 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 8.05 37.16 0.30 -1.49 16 2 C -0.08 -1.22 0.67 -153.13 -0.10 -1.33 16 3 C 0.17 3.29 4.85 -4.04 -0.02 3.27 16 4 N -0.75 -17.38 4.92 -59.91 -0.29 -17.67 16 5 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 6 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 7 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 8 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 9 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.25 6.52 56.52 0.37 -5.89 16 13 C -0.12 -1.59 5.72 -25.04 -0.14 -1.73 16 14 C 0.10 0.96 6.93 -2.31 -0.02 0.94 16 15 N -0.62 -7.91 3.29 -169.97 -0.56 -8.47 16 16 C 0.54 7.68 7.88 -10.99 -0.09 7.59 16 17 O -0.53 -9.85 16.37 5.56 0.09 -9.76 16 18 C -0.04 -0.48 5.26 -29.03 -0.15 -0.63 16 19 C 0.25 3.19 6.63 -156.85 -1.04 2.15 16 20 N -0.54 -6.41 11.19 -11.97 -0.13 -6.54 16 21 C 0.26 2.05 13.13 -90.65 -1.19 0.86 16 22 N -0.48 -4.02 7.45 29.53 0.22 -3.80 16 23 H 0.44 1.90 8.96 -182.34 -1.63 0.26 16 24 N -0.30 -3.86 12.80 32.42 0.41 -3.44 16 25 C 0.12 1.65 6.29 -2.98 -0.02 1.63 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.97 6.75 -51.93 -0.35 0.62 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.36 7.99 4.04 -40.82 -0.16 7.82 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 33 H 0.08 1.01 7.85 -51.92 -0.41 0.60 16 34 H 0.08 1.22 7.84 -51.93 -0.41 0.82 16 35 H 0.08 0.61 7.23 -51.92 -0.38 0.23 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.12 1.03 7.90 -51.93 -0.41 0.62 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.22 0.50 8.06 -52.49 -0.42 0.08 16 40 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 41 H 0.08 1.25 7.59 -51.93 -0.39 0.85 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -38.74 338.94 -8.91 -47.65 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.09 Total: 4.36 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.73 Total: 4.26 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: 0.42 Total: -68.63 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.74 -8.91 -47.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699853629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.477 kcal (2) G-P(sol) polarization free energy of solvation -38.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds