Wall clock time and date at job start Tue Mar 31 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 110.37410 * 2 1 4 4 N 1.46498 * 109.46954 * 302.18768 * 3 2 1 5 5 C 1.36936 * 120.00108 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00053 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.00401 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00335 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99673 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47181 * 89.99275 * 9 7 5 11 11 H 1.48494 * 109.46964 * 209.99630 * 9 7 5 12 12 H 1.48502 * 109.47056 * 329.99453 * 9 7 5 13 13 C 1.54615 * 110.32812 * 237.80647 * 2 1 3 14 14 C 1.54595 * 102.91314 * 262.81115 * 13 2 1 15 15 N 1.48119 * 103.42276 * 322.86405 * 14 13 2 16 16 C 1.34773 * 127.03433 * 219.29036 * 15 14 13 17 17 O 1.21280 * 120.00240 * 179.68699 * 16 15 14 18 18 C 1.50704 * 120.00008 * 359.68188 * 16 15 14 19 19 C 1.50701 * 109.47042 * 180.02562 * 18 16 15 20 20 N 1.33244 * 125.52794 * 89.99904 * 19 18 16 21 21 C 1.30830 * 109.82956 * 180.02562 * 20 19 18 22 22 N 1.34433 * 108.07650 * 0.27201 * 21 20 19 23 23 H 0.96996 * 126.81783 * 179.74136 * 22 21 20 24 24 N 1.30709 * 125.52680 * 270.04339 * 19 18 16 25 25 C 1.47483 * 105.93192 * 39.02521 * 15 14 13 26 26 H 1.09005 * 109.46986 * 297.81513 * 1 2 3 27 27 H 1.09003 * 109.46734 * 57.81108 * 1 2 3 28 28 H 1.09001 * 109.47310 * 177.81211 * 1 2 3 29 29 H 1.08995 * 109.47276 * 62.18797 * 3 2 1 30 30 H 1.08998 * 109.46990 * 182.19097 * 3 2 1 31 31 H 0.97000 * 120.00041 * 0.02562 * 4 3 2 32 32 H 0.96997 * 119.99948 * 180.02562 * 8 7 5 33 33 H 1.09007 * 110.73904 * 21.29799 * 13 2 1 34 34 H 1.09003 * 110.74030 * 144.43639 * 13 2 1 35 35 H 1.09010 * 110.61565 * 204.35309 * 14 13 2 36 36 H 1.08998 * 110.55101 * 81.35037 * 14 13 2 37 37 H 1.09000 * 109.46867 * 60.00181 * 18 16 15 38 38 H 1.08999 * 109.47452 * 300.00248 * 18 16 15 39 39 H 1.08002 * 125.95754 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.91250 * 94.13546 * 25 15 14 41 41 H 1.09000 * 109.91638 * 215.41978 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 7 1.5429 2.1482 -1.1689 5 6 1.8862 3.4568 -1.3805 6 1 2.5405 3.9626 -0.6858 7 6 1.3942 4.1332 -2.4884 8 7 1.7245 5.3908 -2.6919 9 14 0.2631 3.2582 -3.6904 10 1 -1.1477 3.4388 -3.2635 11 1 0.4465 3.8302 -5.0484 12 1 0.5914 1.8102 -3.7146 13 6 2.0671 -0.7725 -1.2269 14 6 2.3639 -2.1753 -0.6491 15 7 2.8803 -1.8857 0.7086 16 6 3.8922 -2.5107 1.3425 17 8 4.2150 -2.1635 2.4588 18 6 4.6226 -3.6411 0.6643 19 6 5.6998 -4.1638 1.5794 20 7 5.5500 -5.1407 2.4730 21 6 6.6798 -5.3459 3.0999 22 7 7.5892 -4.4834 2.6138 23 1 8.5154 -4.3989 2.8891 24 7 6.9326 -3.7317 1.6258 25 6 2.0650 -0.7693 1.2222 26 1 -0.3633 0.4796 0.9090 27 1 -0.3633 0.5475 -0.8698 28 1 -0.3634 -1.0269 -0.0392 29 1 1.7397 1.9418 0.9089 30 1 3.1518 1.4173 -0.0393 31 1 0.9550 1.6941 -1.7927 32 1 1.3804 5.8635 -3.4659 33 1 1.3105 -0.8277 -2.0098 34 1 2.9788 -0.3101 -1.6054 35 1 3.1194 -2.6848 -1.2474 36 1 1.4507 -2.7679 -0.5951 37 1 5.0740 -3.2795 -0.2595 38 1 3.9200 -4.4425 0.4360 39 1 6.8505 -6.0771 3.8763 40 1 1.2330 -1.1570 1.8101 41 1 2.6808 -0.1109 1.8349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699853629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:11 Heat of formation + Delta-G solvation = 41.954932 kcal Electronic energy + Delta-G solvation = -23330.041794 eV Core-core repulsion = 19860.146064 eV Total energy + Delta-G solvation = -3469.895729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.08612 -41.25326 -39.33848 -36.61311 -34.56118 -34.17824 -32.80633 -32.50786 -30.57343 -30.26275 -27.89497 -27.05202 -24.46440 -23.83254 -23.71276 -21.91503 -20.50100 -20.09730 -19.50437 -19.19093 -18.14567 -17.27566 -16.67944 -16.56472 -16.24693 -16.00679 -15.73570 -15.23661 -15.06549 -15.00515 -14.51299 -14.26177 -14.24011 -13.56523 -13.41520 -13.21901 -13.17376 -13.08599 -12.93772 -12.79049 -12.58649 -12.14655 -11.94515 -11.70100 -11.52186 -11.41059 -11.27714 -11.10062 -10.99494 -10.97123 -10.64494 -9.74038 -9.30094 -8.02163 -5.36427 0.63523 1.38033 1.44284 1.51493 1.55130 1.62991 1.84499 2.17550 2.50076 3.14460 3.27873 3.33067 3.63461 3.65406 3.69675 3.81221 4.02702 4.15474 4.26605 4.32492 4.40083 4.44928 4.53244 4.67303 4.74984 4.80044 4.89981 4.93226 5.00392 5.10447 5.19594 5.24445 5.26519 5.33728 5.35530 5.53137 5.74853 6.21071 6.25771 6.50644 7.07087 7.08198 7.08550 7.82299 8.06294 9.19842 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.029545 B = 0.003088 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.485950 B = 9065.355936 C = 9333.686137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C 0.170 3.830 4 N -0.746 5.746 5 C -0.238 4.238 6 H 0.046 0.954 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.297 1.297 12 H -0.240 1.240 13 C -0.126 4.126 14 C 0.102 3.898 15 N -0.617 5.617 16 C 0.536 3.464 17 O -0.588 6.588 18 C -0.039 4.039 19 C 0.232 3.768 20 N -0.573 5.573 21 C 0.275 3.725 22 N -0.476 5.476 23 H 0.457 0.543 24 N -0.345 5.345 25 C 0.123 3.877 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.016 0.984 30 H 0.008 0.992 31 H 0.371 0.629 32 H 0.258 0.742 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.274 0.726 40 H 0.086 0.914 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -29.349 6.801 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 C 0.044 3.956 4 N -0.393 5.393 5 C -0.369 4.369 6 H 0.064 0.936 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.224 1.224 12 H -0.164 1.164 13 C -0.164 4.164 14 C -0.019 4.019 15 N -0.350 5.350 16 C 0.325 3.675 17 O -0.468 6.468 18 C -0.081 4.081 19 C -0.051 4.051 20 N -0.302 5.302 21 C -0.023 4.023 22 N -0.196 5.196 23 H 0.306 0.694 24 N -0.175 5.175 25 C -0.001 4.001 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.035 0.965 30 H 0.026 0.974 31 H 0.206 0.794 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.290 0.710 40 H 0.104 0.896 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.012 -28.652 7.086 29.938 hybrid contribution 0.405 0.774 -0.130 0.883 sum 5.417 -27.879 6.956 29.239 Atomic orbital electron populations 1.21814 0.91799 1.03011 1.02148 1.21581 0.97408 0.93266 0.95445 1.20751 0.95083 0.90881 0.88920 1.42560 1.58996 1.09702 1.28059 1.19000 1.23424 0.87969 1.06549 0.93595 1.25605 1.02759 0.96650 1.00770 1.69909 1.50963 1.11620 1.31294 0.85362 0.78862 0.79630 0.77706 1.20119 1.22379 1.16379 1.22780 1.01977 0.94934 0.96728 1.22845 1.01514 0.96821 0.80682 1.48814 1.32786 1.34416 1.19027 1.20370 0.78682 0.83230 0.85241 1.90705 1.66894 1.67431 1.21770 1.19957 0.94249 0.97214 0.96631 1.23656 0.92110 0.92915 0.96456 1.70334 1.27296 1.20512 1.12036 1.27050 0.83390 0.94029 0.97835 1.48025 1.14979 1.27662 1.28917 0.69412 1.77896 1.08989 1.18961 1.11648 1.21990 0.94466 0.87953 0.95686 0.92574 0.93057 0.89387 0.96550 0.97378 0.79412 0.93301 0.88335 0.92208 0.87132 0.87421 0.84498 0.83072 0.71030 0.89559 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.05 71.98 0.58 -2.52 16 2 C -0.08 -2.08 0.67 -51.29 -0.03 -2.11 16 3 C 0.17 6.68 4.85 86.38 0.42 7.10 16 4 N -0.75 -34.50 4.92 -343.46 -1.69 -36.19 16 5 C -0.24 -13.90 10.47 84.03 0.88 -13.02 16 6 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 7 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 8 N -0.99 -64.26 13.97 21.65 0.30 -63.95 16 9 Si 0.96 44.34 27.74 68.60 1.90 46.24 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 12 H -0.24 -9.54 6.52 99.48 0.65 -8.89 16 13 C -0.13 -2.86 5.72 31.69 0.18 -2.68 16 14 C 0.10 1.59 6.93 86.61 0.60 2.19 16 15 N -0.62 -14.56 3.29 -810.06 -2.67 -17.23 16 16 C 0.54 14.67 7.88 87.66 0.69 15.36 16 17 O -0.59 -22.07 16.37 -3.03 -0.05 -22.12 16 18 C -0.04 -0.76 5.26 29.10 0.15 -0.60 16 19 C 0.23 5.69 6.63 138.63 0.92 6.61 16 20 N -0.57 -12.82 11.19 -191.80 -2.15 -14.96 16 21 C 0.27 3.70 13.13 180.36 2.37 6.06 16 22 N -0.48 -7.29 7.45 -60.49 -0.45 -7.74 16 23 H 0.46 3.29 8.96 -213.10 -1.91 1.38 16 24 N -0.34 -8.66 12.80 -51.33 -0.66 -9.31 16 25 C 0.12 3.27 6.29 86.53 0.54 3.81 16 26 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.05 1.37 6.75 -2.39 -0.02 1.36 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.01 0.35 8.11 -2.39 -0.02 0.33 16 31 H 0.37 15.66 4.04 -92.71 -0.37 15.29 16 32 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 33 H 0.10 1.96 7.85 -2.38 -0.02 1.94 16 34 H 0.06 1.65 7.84 -2.39 -0.02 1.64 16 35 H 0.11 1.12 7.23 -2.38 -0.02 1.10 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 37 H 0.14 2.06 7.90 -2.39 -0.02 2.05 16 38 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.27 0.20 8.06 -2.91 -0.02 0.17 16 40 H 0.09 2.01 7.68 -2.39 -0.02 2.00 16 41 H 0.05 1.62 7.59 -2.39 -0.02 1.60 16 Total: -1.00 -89.97 338.94 1.03 -88.94 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -1.28 Total: 19.63 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 7.77 Total: 16.70 kcal Atomic # 7 Polarization: -142.09 SS G_CDS: -7.31 Total: -149.40 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.90 Total: 46.24 kcal Total: -89.97 1.03 -88.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699853629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.893 kcal (2) G-P(sol) polarization free energy of solvation -89.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds