Wall clock time and date at job start Tue Mar 31 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 110.38521 * 2 1 4 4 N 1.46498 * 109.46893 * 60.77702 * 3 2 1 5 5 C 1.36938 * 119.99658 * 179.97438 * 4 3 2 6 6 H 1.07997 * 120.00208 * 359.97438 * 5 4 3 7 7 C 1.38813 * 119.99822 * 180.02562 * 5 4 3 8 8 N 1.31618 * 120.00032 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46802 * 89.99879 * 9 7 5 11 11 H 1.48497 * 109.47344 * 210.00068 * 9 7 5 12 12 H 1.48498 * 109.46961 * 330.00278 * 9 7 5 13 13 C 1.54283 * 110.34306 * 122.22929 * 2 1 3 14 14 C 1.54391 * 105.05272 * 118.81938 * 13 2 1 15 15 N 1.48317 * 104.53792 * 336.26252 * 14 13 2 16 16 C 1.34769 * 127.77054 * 219.51516 * 15 14 13 17 17 O 1.21277 * 120.00077 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99931 * 359.93266 * 16 15 14 19 19 C 1.50703 * 109.47021 * 180.02562 * 18 16 15 20 20 N 1.33237 * 125.52638 * 90.00445 * 19 18 16 21 21 C 1.30830 * 109.82763 * 180.02562 * 20 19 18 22 22 N 1.34421 * 108.08123 * 359.97438 * 21 20 19 23 23 H 0.97002 * 126.82889 * 179.97438 * 22 21 20 24 24 N 1.30714 * 125.52617 * 269.68723 * 19 18 16 25 25 C 1.48146 * 104.39133 * 39.45765 * 15 14 13 26 26 H 1.08998 * 109.47408 * 299.22292 * 1 2 3 27 27 H 1.08999 * 109.47461 * 59.22741 * 1 2 3 28 28 H 1.09004 * 109.47274 * 179.21933 * 1 2 3 29 29 H 1.09004 * 109.46749 * 180.77405 * 3 2 1 30 30 H 1.09000 * 109.46913 * 300.77477 * 3 2 1 31 31 H 0.96993 * 120.00249 * 359.97438 * 4 3 2 32 32 H 0.97007 * 119.99686 * 180.02562 * 8 7 5 33 33 H 1.09002 * 110.34406 * 237.74521 * 13 2 1 34 34 H 1.09000 * 110.34365 * 359.89689 * 13 2 1 35 35 H 1.09000 * 110.40460 * 94.96891 * 14 13 2 36 36 H 1.08992 * 110.40933 * 217.40455 * 14 13 2 37 37 H 1.09004 * 109.47034 * 300.00001 * 18 16 15 38 38 H 1.08998 * 109.47124 * 60.00094 * 18 16 15 39 39 H 1.08007 * 125.95993 * 179.97438 * 21 20 19 40 40 H 1.09000 * 110.40949 * 201.69443 * 25 15 14 41 41 H 1.09000 * 110.50841 * 79.31045 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6009 2.1268 1.2054 5 6 1.9558 3.4312 1.4240 6 1 2.5766 3.9492 0.7081 7 6 1.5185 4.0873 2.5665 8 7 0.7624 3.4559 3.4393 9 14 2.0032 5.8665 2.8651 10 1 0.9866 6.7645 2.2608 11 1 2.0815 6.1197 4.3262 12 1 3.3269 6.1296 2.2455 13 6 2.0663 -0.7715 1.2237 14 6 2.8796 -1.9437 0.6337 15 7 2.3140 -2.1438 -0.7227 16 6 2.0776 -3.3104 -1.3546 17 8 1.6069 -3.3101 -2.4723 18 6 2.3990 -4.6154 -0.6727 19 6 2.0439 -5.7602 -1.5862 20 7 2.8605 -6.3224 -2.4764 21 6 2.2375 -7.2873 -3.1027 22 7 0.9871 -7.3621 -2.6151 23 1 0.2929 -7.9826 -2.8874 24 7 0.8868 -6.3666 -1.6295 25 6 2.0668 -0.7720 -1.2245 26 1 -0.3634 0.5017 0.8968 27 1 -0.3634 0.5258 -0.8829 28 1 -0.3634 -1.0276 -0.0140 29 1 3.1528 1.4168 -0.0139 30 1 1.6966 1.9579 -0.8830 31 1 1.0437 1.6615 1.8486 32 1 0.4565 3.9146 4.2375 33 1 2.7095 -0.1287 1.8248 34 1 1.2398 -1.1489 1.8258 35 1 3.9352 -1.6797 0.5697 36 1 2.7472 -2.8406 1.2387 37 1 3.4637 -4.6520 -0.4418 38 1 1.8241 -4.6945 0.2499 39 1 2.6550 -7.9145 -3.8766 40 1 1.3223 -0.7869 -2.0206 41 1 2.9938 -0.3228 -1.5806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699853636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:15 Heat of formation + Delta-G solvation = 66.935848 kcal Electronic energy + Delta-G solvation = -23215.125331 eV Core-core repulsion = 19746.312855 eV Total energy + Delta-G solvation = -3468.812475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35744 -40.04869 -38.01287 -34.78694 -33.56699 -32.65940 -31.91069 -30.31155 -29.46393 -29.25880 -26.41584 -25.30393 -23.23316 -22.97327 -22.45799 -21.00683 -19.26134 -18.72410 -18.39002 -17.30524 -17.01591 -16.04092 -15.71921 -15.40610 -15.07713 -14.64066 -14.24638 -13.95214 -13.59002 -13.49726 -13.34342 -12.91875 -12.59690 -12.40895 -12.29113 -12.21966 -12.10409 -11.60829 -11.12573 -10.99110 -10.81332 -10.53791 -10.45787 -10.36008 -10.30495 -10.20773 -10.09137 -9.91546 -9.72852 -9.61799 -8.86687 -8.63718 -6.90763 -5.76285 -3.04265 1.34472 2.35629 2.52150 2.63289 3.09979 3.44284 3.49785 3.50996 3.81449 4.35032 4.45489 4.60110 4.64500 4.82522 4.95443 5.11153 5.14588 5.25887 5.36774 5.50180 5.54765 5.61233 5.82711 5.90452 5.95747 5.99747 6.00556 6.10517 6.17617 6.26250 6.31797 6.47776 6.62688 6.70501 6.74036 6.82598 6.87113 7.58353 7.71277 7.80521 8.15090 8.43046 9.54600 10.12303 10.47423 11.46611 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.051010 B = 0.002665 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.782047 B =10503.466807 C =10537.920723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 C 0.167 3.833 4 N -0.729 5.729 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.124 4.124 14 C 0.098 3.902 15 N -0.619 5.619 16 C 0.543 3.457 17 O -0.538 6.538 18 C -0.045 4.045 19 C 0.251 3.749 20 N -0.535 5.535 21 C 0.262 3.738 22 N -0.484 5.484 23 H 0.441 0.559 24 N -0.303 5.303 25 C 0.117 3.883 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.385 0.615 32 H 0.255 0.745 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.223 0.777 40 H 0.081 0.919 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -22.589 -9.229 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 C 0.039 3.961 4 N -0.374 5.374 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.163 4.163 14 C -0.025 4.025 15 N -0.354 5.354 16 C 0.330 3.670 17 O -0.415 6.415 18 C -0.088 4.088 19 C -0.032 4.032 20 N -0.263 5.263 21 C -0.037 4.037 22 N -0.202 5.202 23 H 0.287 0.713 24 N -0.132 5.132 25 C -0.005 4.005 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.220 0.780 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.239 0.761 40 H 0.099 0.901 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.049 -22.214 -9.483 24.345 hybrid contribution -0.336 0.303 0.045 0.455 sum 2.712 -21.911 -9.438 24.011 Atomic orbital electron populations 1.21775 0.93611 1.00467 1.02861 1.21676 0.96545 0.96161 0.93706 1.20660 0.95983 0.88364 0.91113 1.42357 1.61688 1.11353 1.21961 1.19225 1.25563 0.88314 1.03771 0.91232 1.24719 1.00583 0.98280 0.97401 1.69655 1.39886 1.36308 1.12418 0.86201 0.77984 0.85084 0.76988 1.21798 1.21834 1.20798 1.22647 1.00295 0.95869 0.97453 1.22596 0.98134 0.99395 0.82359 1.48967 1.62907 1.05501 1.17984 1.19674 0.78086 0.83571 0.85685 1.90724 1.44698 1.86847 1.19201 1.19863 1.05142 0.87007 0.96750 1.23306 0.87443 0.96713 0.95775 1.70353 1.34175 1.10652 1.11099 1.26063 0.82921 0.96382 0.98379 1.48075 1.13325 1.28935 1.29882 0.71314 1.78000 1.21731 1.03801 1.09715 1.22423 1.01022 0.80080 0.96990 0.91208 0.92874 0.93695 0.96045 0.96143 0.78039 0.93554 0.88771 0.90940 0.90606 0.90446 0.86008 0.86433 0.76087 0.90091 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.06 37.16 0.30 -1.82 16 2 C -0.08 -1.25 0.73 -153.11 -0.11 -1.36 16 3 C 0.17 3.21 4.91 -4.04 -0.02 3.19 16 4 N -0.73 -17.62 4.93 -59.91 -0.30 -17.91 16 5 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 9 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.12 -1.75 5.78 -25.33 -0.15 -1.90 16 14 C 0.10 1.08 6.92 -2.31 -0.02 1.07 16 15 N -0.62 -8.26 3.32 -169.17 -0.56 -8.82 16 16 C 0.54 7.83 7.91 -10.99 -0.09 7.74 16 17 O -0.54 -9.96 16.30 5.56 0.09 -9.87 16 18 C -0.05 -0.50 5.31 -29.03 -0.15 -0.65 16 19 C 0.25 3.23 6.63 -156.85 -1.04 2.19 16 20 N -0.53 -6.49 11.19 -11.98 -0.13 -6.62 16 21 C 0.26 2.06 13.13 -90.66 -1.19 0.87 16 22 N -0.48 -3.96 7.45 29.53 0.22 -3.74 16 23 H 0.44 1.80 8.96 -182.33 -1.63 0.17 16 24 N -0.30 -3.84 12.80 32.42 0.41 -3.42 16 25 C 0.12 1.70 6.15 -2.41 -0.01 1.69 16 26 H 0.07 1.28 7.01 -51.93 -0.36 0.91 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.39 9.71 6.28 -40.82 -0.26 9.46 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.09 1.50 7.49 -51.93 -0.39 1.11 16 34 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.66 7.31 -51.93 -0.38 0.28 16 37 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 1.05 7.95 -51.93 -0.41 0.63 16 39 H 0.22 0.51 8.06 -52.48 -0.42 0.09 16 40 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 41 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -36.90 342.10 -9.28 -46.18 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.14 Total: 4.97 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.73 Total: 3.88 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: 0.37 Total: -67.48 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.90 -9.28 -46.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699853636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.116 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds