Wall clock time and date at job start Tue Mar 31 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00502 * 2 1 4 4 H 1.07997 * 120.00174 * 200.39274 * 3 2 1 5 5 C 1.38813 * 119.99833 * 20.39212 * 3 2 1 6 6 N 1.31618 * 119.99939 * 15.48186 * 5 3 2 7 7 Si 1.86801 * 119.99968 * 195.48628 * 5 3 2 8 8 H 1.48500 * 109.46877 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47380 * 119.99944 * 7 5 3 10 10 H 1.48500 * 109.46699 * 239.99952 * 7 5 3 11 11 C 1.46501 * 119.99621 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47265 * 90.00191 * 11 2 1 13 13 C 1.53005 * 109.47390 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47460 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00069 * 180.27304 * 14 13 12 16 16 O 1.21647 * 120.00204 * 354.95935 * 15 14 13 17 17 C 1.47092 * 120.00005 * 174.95143 * 15 14 13 18 18 C 1.39330 * 120.58672 * 185.22673 * 17 15 14 19 19 C 1.39470 * 118.96110 * 179.97438 * 18 17 15 20 20 C 1.35761 * 120.12583 * 0.02909 * 19 18 17 21 21 N 1.35431 * 121.23331 * 359.96869 * 20 19 18 22 22 C 1.46500 * 119.47151 * 180.02562 * 21 20 19 23 23 C 1.34655 * 121.05611 * 359.73513 * 21 20 19 24 24 O 1.21887 * 120.10372 * 180.28346 * 23 21 20 25 25 H 1.08997 * 109.46990 * 275.62058 * 1 2 3 26 26 H 1.09003 * 109.46433 * 35.61359 * 1 2 3 27 27 H 1.08990 * 109.47452 * 155.61951 * 1 2 3 28 28 H 0.97001 * 120.00016 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47155 * 329.99966 * 11 2 1 30 30 H 1.09002 * 109.47033 * 210.00355 * 11 2 1 31 31 H 1.08998 * 109.47218 * 59.99814 * 12 11 2 32 32 H 1.09001 * 109.46778 * 299.99423 * 12 11 2 33 33 H 1.08998 * 109.47197 * 59.99672 * 13 12 11 34 34 H 1.09002 * 109.46865 * 300.00137 * 13 12 11 35 35 H 0.97002 * 119.99490 * 359.97438 * 14 13 12 36 36 H 1.08006 * 120.52077 * 0.02562 * 18 17 15 37 37 H 1.07997 * 119.93944 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.37962 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.47092 * 0.02562 * 22 21 20 40 40 H 1.08997 * 109.47221 * 120.00436 * 22 21 20 41 41 H 1.09001 * 109.47317 * 240.00675 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1790 1.2151 -0.3259 5 6 1.5210 2.3504 0.4189 6 7 0.3932 2.2830 1.0940 7 14 2.2755 4.0130 0.0243 8 1 3.5345 3.8168 -0.7384 9 1 1.3220 4.8087 -0.7899 10 1 2.5702 4.7352 1.2879 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2168 -3.0353 -1.4439 14 7 3.4616 -3.4573 -2.8252 15 6 4.1188 -4.6077 -3.0720 16 8 4.5889 -5.2491 -2.1514 17 6 4.2676 -5.0877 -4.4543 18 6 4.8485 -6.3269 -4.7159 19 6 4.9723 -6.7489 -6.0394 20 6 4.5314 -5.9578 -7.0509 21 7 3.9657 -4.7523 -6.8041 22 6 3.5028 -3.9304 -7.9249 23 6 3.8167 -4.2997 -5.5447 24 8 3.3005 -3.2142 -5.3422 25 1 -0.3633 0.1006 1.0227 26 1 -0.3632 0.8355 -0.5985 27 1 -0.3634 -0.9359 -0.4242 28 1 -0.0460 3.0967 1.3871 29 1 1.6083 -2.0286 0.5129 30 1 3.1498 -1.1387 0.5134 31 1 3.0416 -0.9500 -1.9567 32 1 1.5000 -1.8400 -1.9571 33 1 2.6273 -3.7949 -0.9305 34 1 4.1692 -2.9056 -0.9298 35 1 3.1467 -2.9108 -3.5622 36 1 5.1968 -6.9512 -3.9063 37 1 5.4205 -7.7063 -6.2602 38 1 4.6328 -6.2968 -8.0714 39 1 3.6971 -4.4516 -8.8623 40 1 2.4326 -3.7495 -7.8252 41 1 4.0340 -2.9786 -7.9213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752097809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:00 Heat of formation + Delta-G solvation = -8.774134 kcal Electronic energy + Delta-G solvation = -22894.583283 eV Core-core repulsion = 19390.195025 eV Total energy + Delta-G solvation = -3504.388258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.84735 -39.17352 -37.52096 -36.12466 -34.85304 -34.44551 -31.85740 -30.64936 -29.64137 -28.16381 -26.10941 -25.65837 -24.30700 -23.06582 -21.81363 -20.84704 -20.08562 -18.06893 -17.83230 -17.26703 -16.61648 -16.58653 -15.85730 -15.45439 -15.17292 -14.91698 -14.66656 -14.05641 -13.92511 -13.49416 -13.31688 -13.16662 -12.93216 -12.81278 -12.61761 -12.44155 -12.31379 -11.56616 -11.28845 -10.90904 -10.70567 -10.68410 -10.44713 -10.38441 -10.31359 -10.06623 -9.84817 -9.72859 -9.68371 -8.71925 -8.44784 -8.39830 -6.66342 -5.62717 -3.06078 0.07215 1.40158 2.06113 2.66831 3.44210 3.50473 3.51951 3.54508 3.61286 3.99299 4.05918 4.52741 4.57281 4.59310 4.77570 4.77900 4.88353 5.11655 5.37665 5.41954 5.53266 5.53708 5.65059 5.76027 5.95200 6.00514 6.08494 6.26880 6.39263 6.46793 6.57155 6.84807 6.86987 6.93114 7.09870 7.47597 7.48744 7.81637 7.90988 7.97761 8.48946 8.54359 9.33937 9.98662 10.46943 11.42555 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.002942 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.824874 B = 9515.805793 C =10176.496545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.250 4.250 4 H 0.069 0.931 5 C -0.003 4.003 6 N -0.909 5.909 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.119 3.881 14 N -0.712 5.712 15 C 0.570 3.430 16 O -0.557 6.557 17 C -0.269 4.269 18 C 0.055 3.945 19 C -0.240 4.240 20 C 0.155 3.845 21 N -0.494 5.494 22 C 0.059 3.941 23 C 0.526 3.474 24 O -0.534 6.534 25 H 0.030 0.970 26 H 0.040 0.960 27 H -0.002 1.002 28 H 0.250 0.750 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.415 0.585 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 -20.389 -21.635 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.327 5.327 3 C -0.380 4.380 4 H 0.087 0.913 5 C -0.200 4.200 6 N -0.555 5.555 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.005 4.005 14 N -0.372 5.372 15 C 0.356 3.644 16 O -0.438 6.438 17 C -0.276 4.276 18 C 0.032 3.968 19 C -0.263 4.263 20 C 0.025 3.975 21 N -0.202 5.202 22 C -0.082 4.082 23 C 0.328 3.672 24 O -0.416 6.416 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.261 0.739 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.186 0.814 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.746 -19.861 -20.835 29.809 hybrid contribution 0.208 1.111 -0.709 1.334 sum 7.954 -18.751 -21.544 29.648 Atomic orbital electron populations 1.20784 0.82658 0.95314 0.99462 1.43927 1.01900 1.00758 1.86089 1.19265 0.96834 0.85141 1.36734 0.91289 1.24957 0.97984 0.98314 0.98782 1.70110 1.19340 1.26512 1.39496 0.86203 0.78444 0.84459 0.77600 1.20352 1.21708 1.21843 1.20603 0.96240 0.88346 0.92000 1.22497 0.99581 0.94396 1.02486 1.21440 1.00178 0.96876 0.82031 1.46679 1.56509 1.23176 1.10828 1.17429 0.78653 0.81462 0.86809 1.90767 1.50018 1.57937 1.45120 1.21134 1.13575 0.98883 0.94024 1.22041 0.85144 0.92358 0.97280 1.20708 1.10872 1.03142 0.91584 1.22267 0.89874 0.83920 1.01397 1.45391 1.48624 1.16715 1.09482 1.22273 1.02538 0.96451 0.86922 1.17073 0.81085 0.87176 0.81877 1.90683 1.46476 1.21990 1.82420 0.95148 0.94142 0.98358 0.93938 0.94414 0.93296 0.91572 0.92305 0.92001 0.91732 0.73935 0.83177 0.82794 0.81423 0.89068 0.89494 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.25 8.98 59.85 0.54 4.79 16 2 N -0.60 -16.17 2.93 -181.12 -0.53 -16.70 16 3 C -0.25 -7.24 9.67 -15.06 -0.15 -7.39 16 4 H 0.07 1.96 7.88 -52.49 -0.41 1.54 16 5 C 0.00 -0.08 5.06 -17.43 -0.09 -0.17 16 6 N -0.91 -27.65 10.69 55.49 0.59 -27.05 16 7 Si 0.90 22.76 29.58 -169.99 -5.03 17.73 16 8 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 C 0.16 3.44 5.64 -4.04 -0.02 3.42 16 12 C -0.15 -2.89 5.65 -26.73 -0.15 -3.05 16 13 C 0.12 2.09 5.68 -4.04 -0.02 2.07 16 14 N -0.71 -12.26 5.47 -61.49 -0.34 -12.59 16 15 C 0.57 9.50 7.74 -12.67 -0.10 9.40 16 16 O -0.56 -10.52 16.41 5.24 0.09 -10.43 16 17 C -0.27 -3.44 5.92 -104.50 -0.62 -4.05 16 18 C 0.06 0.49 9.69 -38.72 -0.38 0.11 16 19 C -0.24 -1.16 9.99 -40.01 -0.40 -1.56 16 20 C 0.16 0.61 10.28 -16.85 -0.17 0.44 16 21 N -0.49 -3.60 2.98 -126.76 -0.38 -3.98 16 22 C 0.06 0.27 10.04 59.85 0.60 0.87 16 23 C 0.53 6.38 7.44 -14.92 -0.11 6.27 16 24 O -0.53 -8.15 13.70 5.02 0.07 -8.09 16 25 H 0.03 0.85 7.37 -51.93 -0.38 0.47 16 26 H 0.04 1.12 7.26 -51.93 -0.38 0.74 16 27 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 28 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.42 7.20 5.07 -40.82 -0.21 7.00 16 36 H 0.15 1.26 7.70 -52.48 -0.40 0.86 16 37 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 38 H 0.17 -0.12 7.79 -52.48 -0.41 -0.53 16 39 H 0.09 0.05 7.70 -51.93 -0.40 -0.35 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -37.51 344.97 -7.33 -44.84 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.94 Total: -0.08 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -1.07 Total: 11.16 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.65 Total: -60.33 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.15 Total: -18.52 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.51 -7.33 -44.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752097809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.070 kcal (2) G-P(sol) polarization free energy of solvation -37.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds