Wall clock time and date at job start Tue Mar 31 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00502 * 2 1 4 4 H 1.07997 * 120.00174 * 200.39274 * 3 2 1 5 5 C 1.38813 * 119.99833 * 20.39212 * 3 2 1 6 6 N 1.31618 * 119.99939 * 15.48186 * 5 3 2 7 7 Si 1.86801 * 119.99968 * 195.48628 * 5 3 2 8 8 H 1.48500 * 109.46877 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47380 * 119.99944 * 7 5 3 10 10 H 1.48500 * 109.46699 * 239.99952 * 7 5 3 11 11 C 1.46501 * 119.99621 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47265 * 90.00191 * 11 2 1 13 13 C 1.53005 * 109.47390 * 180.02562 * 12 11 2 14 14 N 1.46497 * 109.47460 * 180.02562 * 13 12 11 15 15 C 1.34769 * 120.00069 * 180.27304 * 14 13 12 16 16 O 1.21647 * 120.00204 * 354.95935 * 15 14 13 17 17 C 1.47092 * 120.00005 * 174.95143 * 15 14 13 18 18 C 1.39330 * 120.58672 * 185.22673 * 17 15 14 19 19 C 1.39470 * 118.96110 * 179.97438 * 18 17 15 20 20 C 1.35761 * 120.12583 * 0.02909 * 19 18 17 21 21 N 1.35431 * 121.23331 * 359.96869 * 20 19 18 22 22 C 1.46500 * 119.47151 * 180.02562 * 21 20 19 23 23 C 1.34655 * 121.05611 * 359.73513 * 21 20 19 24 24 O 1.21887 * 120.10372 * 180.28346 * 23 21 20 25 25 H 1.08997 * 109.46990 * 275.62058 * 1 2 3 26 26 H 1.09003 * 109.46433 * 35.61359 * 1 2 3 27 27 H 1.08990 * 109.47452 * 155.61951 * 1 2 3 28 28 H 0.97001 * 120.00016 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.47155 * 329.99966 * 11 2 1 30 30 H 1.09002 * 109.47033 * 210.00355 * 11 2 1 31 31 H 1.08998 * 109.47218 * 59.99814 * 12 11 2 32 32 H 1.09001 * 109.46778 * 299.99423 * 12 11 2 33 33 H 1.08998 * 109.47197 * 59.99672 * 13 12 11 34 34 H 1.09002 * 109.46865 * 300.00137 * 13 12 11 35 35 H 0.97002 * 119.99490 * 359.97438 * 14 13 12 36 36 H 1.08006 * 120.52077 * 0.02562 * 18 17 15 37 37 H 1.07997 * 119.93944 * 179.97438 * 19 18 17 38 38 H 1.08007 * 119.37962 * 180.02562 * 20 19 18 39 39 H 1.09005 * 109.47092 * 0.02562 * 22 21 20 40 40 H 1.08997 * 109.47221 * 120.00436 * 22 21 20 41 41 H 1.09001 * 109.47317 * 240.00675 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1790 1.2151 -0.3259 5 6 1.5210 2.3504 0.4189 6 7 0.3932 2.2830 1.0940 7 14 2.2755 4.0130 0.0243 8 1 3.5345 3.8168 -0.7384 9 1 1.3220 4.8087 -0.7899 10 1 2.5702 4.7352 1.2879 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2168 -3.0353 -1.4439 14 7 3.4616 -3.4573 -2.8252 15 6 4.1188 -4.6077 -3.0720 16 8 4.5889 -5.2491 -2.1514 17 6 4.2676 -5.0877 -4.4543 18 6 4.8485 -6.3269 -4.7159 19 6 4.9723 -6.7489 -6.0394 20 6 4.5314 -5.9578 -7.0509 21 7 3.9657 -4.7523 -6.8041 22 6 3.5028 -3.9304 -7.9249 23 6 3.8167 -4.2997 -5.5447 24 8 3.3005 -3.2142 -5.3422 25 1 -0.3633 0.1006 1.0227 26 1 -0.3632 0.8355 -0.5985 27 1 -0.3634 -0.9359 -0.4242 28 1 -0.0460 3.0967 1.3871 29 1 1.6083 -2.0286 0.5129 30 1 3.1498 -1.1387 0.5134 31 1 3.0416 -0.9500 -1.9567 32 1 1.5000 -1.8400 -1.9571 33 1 2.6273 -3.7949 -0.9305 34 1 4.1692 -2.9056 -0.9298 35 1 3.1467 -2.9108 -3.5622 36 1 5.1968 -6.9512 -3.9063 37 1 5.4205 -7.7063 -6.2602 38 1 4.6328 -6.2968 -8.0714 39 1 3.6971 -4.4516 -8.8623 40 1 2.4326 -3.7495 -7.8252 41 1 4.0340 -2.9786 -7.9213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752097809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:59 Heat of formation + Delta-G solvation = -35.926191 kcal Electronic energy + Delta-G solvation = -22895.760684 eV Core-core repulsion = 19390.195025 eV Total energy + Delta-G solvation = -3505.565659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.55443 -40.36218 -38.32872 -37.97907 -36.09366 -35.46509 -33.74353 -31.86950 -30.96356 -28.62915 -28.00674 -27.33264 -25.48677 -23.74538 -23.44983 -22.22765 -21.68769 -19.00544 -18.75863 -18.51669 -17.97365 -17.29996 -17.02229 -16.71243 -16.59701 -16.38718 -15.59473 -15.50005 -15.38372 -14.86670 -14.70494 -14.55697 -14.18885 -13.64068 -13.48962 -13.37433 -13.08753 -13.06488 -12.85883 -12.82181 -12.65489 -12.54330 -12.32414 -12.09496 -11.85709 -11.54994 -11.30155 -11.10196 -11.03040 -10.65197 -10.05223 -9.11137 -8.83510 -7.84690 -5.31483 -0.55815 0.76355 1.44234 1.45050 1.50300 1.56726 1.71589 2.36247 2.51433 2.70640 3.27801 3.49948 3.62271 3.77838 3.90719 3.98880 4.05025 4.16305 4.27033 4.34269 4.41250 4.45140 4.61284 4.73258 4.80560 4.81632 4.84233 4.89306 4.95965 5.21345 5.22162 5.23917 5.43538 5.46932 5.56132 5.60053 5.67612 5.87822 6.30102 6.55352 6.85148 7.12945 7.29068 7.85128 8.28552 9.19239 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.002942 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.824874 B = 9515.805793 C =10176.496545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.622 5.622 3 C -0.264 4.264 4 H 0.069 0.931 5 C -0.057 4.057 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.269 1.269 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.154 3.846 12 C -0.126 4.126 13 C 0.129 3.871 14 N -0.720 5.720 15 C 0.564 3.436 16 O -0.594 6.594 17 C -0.331 4.331 18 C 0.076 3.924 19 C -0.243 4.243 20 C 0.189 3.811 21 N -0.490 5.490 22 C 0.053 3.947 23 C 0.515 3.485 24 O -0.584 6.584 25 H 0.007 0.993 26 H 0.015 0.985 27 H 0.030 0.970 28 H 0.249 0.751 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.414 0.586 36 H 0.149 0.851 37 H 0.199 0.801 38 H 0.235 0.765 39 H 0.146 0.854 40 H 0.075 0.925 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.329 -22.627 -25.303 35.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.345 5.345 3 C -0.394 4.394 4 H 0.087 0.913 5 C -0.252 4.252 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.193 1.193 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.027 3.973 12 C -0.167 4.167 13 C 0.004 3.996 14 N -0.380 5.380 15 C 0.354 3.646 16 O -0.478 6.478 17 C -0.338 4.338 18 C 0.052 3.948 19 C -0.264 4.264 20 C 0.058 3.942 21 N -0.195 5.195 22 C -0.087 4.087 23 C 0.319 3.681 24 O -0.470 6.470 25 H 0.025 0.975 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.260 0.740 36 H 0.166 0.834 37 H 0.216 0.784 38 H 0.251 0.749 39 H 0.164 0.836 40 H 0.093 0.907 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.148 -22.144 -24.557 34.309 hybrid contribution -0.152 1.598 0.252 1.625 sum 8.996 -20.546 -24.305 33.072 Atomic orbital electron populations 1.20554 0.82674 0.95899 0.97802 1.44188 1.02275 1.01754 1.86305 1.19567 0.97083 0.86375 1.36382 0.91327 1.25775 0.98710 1.01792 0.98890 1.70265 1.20662 1.27191 1.40515 0.85150 0.77884 0.79822 0.77276 1.19318 1.21547 1.21617 1.20748 0.95921 0.87023 0.93559 1.22151 0.99396 0.94820 1.00304 1.21209 0.99573 0.95855 0.82962 1.46736 1.57172 1.23906 1.10190 1.18076 0.77407 0.80594 0.88553 1.90713 1.51630 1.58769 1.46735 1.20799 1.19325 1.01543 0.92101 1.22327 0.82443 0.90376 0.99659 1.21222 1.10744 1.04957 0.89502 1.23413 0.85195 0.81296 1.04250 1.45505 1.47514 1.17971 1.08506 1.22555 1.01644 0.96672 0.87814 1.17066 0.80975 0.86595 0.83465 1.90622 1.49075 1.23969 1.83350 0.97453 0.96580 0.95117 0.94203 0.92778 0.93521 0.93189 0.92491 0.91610 0.92327 0.74028 0.83366 0.78432 0.74886 0.83571 0.90667 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.37 8.98 127.77 1.15 10.52 16 2 N -0.62 -33.91 2.93 -726.96 -2.13 -36.04 16 3 C -0.26 -15.55 9.67 84.03 0.81 -14.74 16 4 H 0.07 3.96 7.88 -2.91 -0.02 3.93 16 5 C -0.06 -3.38 5.06 84.86 0.43 -2.95 16 6 N -0.94 -58.36 10.69 21.65 0.23 -58.13 16 7 Si 0.97 47.48 29.58 68.60 2.03 49.51 16 8 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 9 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 10 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 11 C 0.15 6.90 5.64 86.38 0.49 7.39 16 12 C -0.13 -5.06 5.65 30.60 0.17 -4.88 16 13 C 0.13 4.72 5.68 86.38 0.49 5.21 16 14 N -0.72 -26.27 5.47 -466.70 -2.55 -28.82 16 15 C 0.56 19.84 7.74 86.57 0.67 20.51 16 16 O -0.59 -23.58 16.41 -4.18 -0.07 -23.65 16 17 C -0.33 -8.59 5.92 -19.79 -0.12 -8.71 16 18 C 0.08 1.23 9.69 22.83 0.22 1.45 16 19 C -0.24 -1.16 9.99 21.99 0.22 -0.94 16 20 C 0.19 0.38 10.28 83.56 0.86 1.24 16 21 N -0.49 -5.67 2.98 -673.17 -2.00 -7.67 16 22 C 0.05 0.32 10.04 127.77 1.28 1.60 16 23 C 0.52 12.49 7.44 85.16 0.63 13.13 16 24 O -0.58 -18.80 13.70 -4.95 -0.07 -18.87 16 25 H 0.01 0.41 7.37 -2.39 -0.02 0.40 16 26 H 0.02 0.89 7.26 -2.39 -0.02 0.88 16 27 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 28 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 29 H 0.05 2.23 8.07 -2.39 -0.02 2.21 16 30 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.41 15.37 5.07 -92.79 -0.47 14.90 16 36 H 0.15 2.37 7.70 -2.91 -0.02 2.34 16 37 H 0.20 -0.70 8.06 -2.91 -0.02 -0.73 16 38 H 0.23 -2.51 7.79 -2.91 -0.02 -2.53 16 39 H 0.15 -0.76 7.70 -2.38 -0.02 -0.78 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -88.17 344.97 3.31 -84.85 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.56 Total: 9.97 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 7.31 Total: 28.82 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -6.45 Total: -130.65 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.14 Total: -42.51 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -88.17 3.31 -84.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752097809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.928 kcal (2) G-P(sol) polarization free energy of solvation -88.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds