Wall clock time and date at job start Tue Mar 31 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99713 * 2 1 4 4 H 1.48493 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47078 * 299.99591 * 3 2 1 6 6 H 1.48493 * 109.47060 * 59.99700 * 3 2 1 7 7 C 1.38805 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00440 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46967 * 34.99641 * 10 9 7 12 12 C 1.52997 * 109.47170 * 154.99825 * 10 9 7 13 13 N 1.46497 * 109.46983 * 305.00174 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 14 19 19 N 1.33239 * 125.52653 * 269.69447 * 18 17 16 20 20 C 1.30836 * 109.82717 * 179.84952 * 19 18 17 21 21 N 1.34427 * 108.07754 * 0.41013 * 20 19 18 22 22 H 0.97001 * 126.82706 * 179.79035 * 21 20 19 23 23 N 1.30717 * 125.52380 * 89.99959 * 18 17 16 24 24 C 1.53006 * 109.47078 * 275.00144 * 10 9 7 25 25 C 1.52997 * 117.49906 * 128.74286 * 24 10 9 26 26 C 1.52995 * 117.49774 * 60.08400 * 24 10 9 27 27 H 0.97000 * 120.00173 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99592 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.46832 * 184.99991 * 12 10 9 30 30 H 1.09002 * 109.47153 * 65.00182 * 12 10 9 31 31 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 32 32 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 33 33 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 34 34 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 35 35 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 36 36 H 1.08001 * 125.96084 * 180.12048 * 20 19 18 37 37 H 1.08998 * 115.54789 * 274.41495 * 24 10 9 38 38 H 1.08999 * 117.49834 * 0.02562 * 25 24 10 39 39 H 1.09003 * 117.49691 * 145.01926 * 25 24 10 40 40 H 1.09007 * 117.49974 * 214.98222 * 26 24 10 41 41 H 1.09002 * 117.50306 * 359.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9689 -3.5505 0.5899 12 6 1.1810 -4.7521 0.6102 13 7 0.7344 -4.3354 1.9417 14 6 -0.0546 -5.1477 2.6727 15 8 -0.3952 -6.2233 2.2279 16 6 -0.5145 -4.7188 4.0422 17 6 -1.3915 -5.8142 4.6519 18 6 -1.8509 -5.3857 6.0217 19 7 -1.2110 -5.6300 7.1645 20 6 -1.8793 -5.1174 8.1657 21 7 -2.9848 -4.5322 7.6732 22 1 -3.6732 -4.0718 8.1784 23 7 -2.9447 -4.7188 6.2818 24 6 2.4221 -4.0356 -1.4365 25 6 3.8823 -4.3890 -1.7257 26 6 3.3029 -3.0621 -2.2222 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 1.7560 -5.6745 0.6919 30 1 0.3134 -4.9201 -0.0280 31 1 1.0071 -3.4753 2.2977 32 1 0.3529 -4.5501 4.6804 33 1 -1.0900 -3.7968 3.9601 34 1 -2.2589 -5.9825 4.0136 35 1 -0.8165 -6.7365 4.7340 36 1 -1.5951 -5.1613 9.2067 37 1 1.6542 -4.5774 -1.9886 38 1 4.5836 -4.3521 -0.8922 39 1 4.0751 -5.1632 -2.4684 40 1 3.1147 -2.9637 -3.2914 41 1 3.6228 -2.1515 -1.7155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752454550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:54 Heat of formation + Delta-G solvation = 76.912114 kcal Electronic energy + Delta-G solvation = -22713.137773 eV Core-core repulsion = 19244.757901 eV Total energy + Delta-G solvation = -3468.379872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.28036 -39.37917 -37.54225 -34.72361 -34.20123 -33.35462 -32.15831 -31.10740 -30.52007 -28.10118 -25.38319 -23.54199 -22.93107 -22.16827 -21.67931 -20.36546 -20.02367 -19.38172 -18.53470 -17.42571 -16.63152 -15.79758 -15.74088 -15.34438 -15.18800 -14.90446 -14.49537 -14.01438 -13.84860 -13.38290 -13.07622 -13.00967 -12.61031 -12.31314 -12.16286 -11.98324 -11.35727 -11.17588 -11.07285 -10.88904 -10.85578 -10.70068 -10.30325 -10.22030 -10.10150 -9.94096 -9.90586 -9.65598 -9.41206 -9.27427 -8.99172 -8.57071 -7.05138 -5.82491 -3.11920 1.40546 2.45639 2.68060 3.00994 3.38353 3.44701 3.46860 3.58691 4.01192 4.41783 4.51385 4.59218 4.75415 5.00438 5.23409 5.25265 5.29627 5.48294 5.52996 5.61162 5.66222 5.77686 5.92328 5.93205 5.99461 6.03739 6.05431 6.09336 6.19303 6.28089 6.43250 6.55636 6.62286 6.78748 6.79468 6.95064 6.99552 7.64835 7.88726 7.98550 8.34429 8.62298 9.46763 10.01323 10.37416 11.39384 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.003504 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.096382 B = 7988.107727 C = 9552.370899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.193 3.807 11 H 0.055 0.945 12 C 0.119 3.881 13 N -0.712 5.712 14 C 0.515 3.485 15 O -0.556 6.556 16 C -0.134 4.134 17 C -0.009 4.009 18 C 0.233 3.767 19 N -0.540 5.540 20 C 0.258 3.742 21 N -0.488 5.488 22 H 0.441 0.559 23 N -0.310 5.310 24 C -0.159 4.159 25 C -0.196 4.196 26 C -0.157 4.157 27 H 0.255 0.745 28 H 0.386 0.614 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.411 0.589 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.222 0.778 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -9.652 13.172 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.733 3.267 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.082 3.918 11 H 0.073 0.927 12 C -0.006 4.006 13 N -0.363 5.363 14 C 0.301 3.699 15 O -0.435 6.435 16 C -0.175 4.175 17 C -0.050 4.050 18 C -0.049 4.049 19 N -0.269 5.269 20 C -0.041 4.041 21 N -0.205 5.205 22 H 0.286 0.714 23 N -0.139 5.139 24 C -0.181 4.181 25 C -0.234 4.234 26 C -0.194 4.194 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.238 0.762 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.546 -10.233 12.316 16.086 hybrid contribution -0.187 1.865 0.680 1.994 sum -1.733 -8.368 12.996 15.553 Atomic orbital electron populations 1.69668 1.05051 1.25558 1.57366 1.24714 0.95420 0.97550 1.02900 0.86199 0.78836 0.84444 0.77180 1.20569 1.21923 1.21972 1.19207 0.90855 0.83853 1.42831 0.91086 1.42466 1.05843 0.99425 1.88054 1.20060 0.94355 0.86144 0.91219 0.92725 1.21584 0.98547 0.97452 0.82995 1.45967 1.50649 1.21870 1.17858 1.20389 0.78293 0.84438 0.86805 1.90668 1.57215 1.22840 1.72780 1.21548 1.01391 1.00218 0.94339 1.19659 1.00658 0.98740 0.85917 1.24383 0.89388 0.94933 0.96211 1.70451 1.32297 1.26406 0.97715 1.26120 0.85008 0.92268 1.00700 1.48162 1.21263 1.45004 1.06118 0.71377 1.78095 1.22225 1.23337 0.90279 1.23032 0.92151 1.03031 0.99844 1.22959 0.97307 0.99789 1.03345 1.22781 1.03450 0.94051 0.99091 0.93544 0.78034 0.91661 0.91831 0.75302 0.88527 0.88407 0.88630 0.88249 0.76190 0.89141 0.89546 0.90096 0.90242 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -5.98 8.63 -15.06 -0.13 -6.11 16 8 H 0.07 1.76 6.91 -52.48 -0.36 1.40 16 9 N -0.72 -16.27 4.54 -53.42 -0.24 -16.51 16 10 C 0.19 3.55 2.70 -67.93 -0.18 3.37 16 11 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 12 C 0.12 2.01 5.22 -4.04 -0.02 1.99 16 13 N -0.71 -11.67 5.39 -60.30 -0.32 -12.00 16 14 C 0.51 8.29 7.83 -10.98 -0.09 8.21 16 15 O -0.56 -10.46 15.98 5.56 0.09 -10.37 16 16 C -0.13 -1.76 5.68 -27.88 -0.16 -1.92 16 17 C -0.01 -0.12 5.13 -27.89 -0.14 -0.27 16 18 C 0.23 3.04 7.39 -156.85 -1.16 1.88 16 19 N -0.54 -6.46 11.19 -11.98 -0.13 -6.59 16 20 C 0.26 2.01 13.13 -90.65 -1.19 0.82 16 21 N -0.49 -4.03 7.45 29.53 0.22 -3.81 16 22 H 0.44 1.92 8.96 -182.33 -1.63 0.29 16 23 N -0.31 -3.97 12.80 32.42 0.41 -3.56 16 24 C -0.16 -2.76 5.36 -90.62 -0.49 -3.25 16 25 C -0.20 -2.97 10.18 -26.70 -0.27 -3.25 16 26 C -0.16 -2.77 9.78 -26.70 -0.26 -3.03 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.39 9.62 7.80 -40.82 -0.32 9.30 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.41 6.80 8.14 -40.82 -0.33 6.47 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.22 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.09 1.55 8.11 -51.93 -0.42 1.12 16 38 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.10 2.07 6.23 -51.93 -0.32 1.75 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -33.12 351.26 -10.32 -43.44 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -7.15 Total: 15.58 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -4.19 Total: -1.91 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: 0.66 Total: -68.46 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.12 -10.32 -43.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752454550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.351 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds