Wall clock time and date at job start Tue Mar 31 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00117 * 2 1 4 4 H 1.48500 * 109.47181 * 239.99568 * 3 2 1 5 5 H 1.48494 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47023 * 120.00310 * 3 2 1 7 7 C 1.38813 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00085 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99661 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46943 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.49965 * 54.93486 * 11 10 9 13 13 C 1.53037 * 109.49715 * 175.00454 * 11 10 9 14 14 C 1.53038 * 109.53983 * 181.34909 * 13 11 10 15 15 C 1.53197 * 109.30963 * 298.63302 * 14 13 11 16 16 N 1.46926 * 108.77484 * 54.63204 * 15 14 13 17 17 C 1.34777 * 120.62694 * 126.37299 * 16 15 14 18 18 O 1.21278 * 119.99854 * 180.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 359.97438 * 17 16 15 20 20 N 1.46505 * 109.47064 * 180.02562 * 19 17 16 21 21 C 1.34430 * 126.82083 * 124.99865 * 20 19 17 22 22 N 1.30833 * 108.07734 * 179.97438 * 21 20 19 23 23 C 1.33243 * 109.82413 * 359.97438 * 22 21 20 24 24 N 1.30715 * 108.94993 * 359.75621 * 23 22 21 25 25 C 1.46922 * 118.74006 * 306.64082 * 16 15 14 26 26 H 0.97000 * 119.99451 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00338 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47365 * 60.00210 * 10 9 7 29 29 H 1.08996 * 109.47582 * 299.99834 * 10 9 7 30 30 H 1.09001 * 109.46501 * 61.32476 * 13 11 10 31 31 H 1.09004 * 109.44815 * 301.36136 * 13 11 10 32 32 H 1.09000 * 109.50307 * 178.68276 * 14 13 11 33 33 H 1.09001 * 109.50115 * 58.57957 * 14 13 11 34 34 H 1.09001 * 109.58130 * 294.84241 * 15 14 13 35 35 H 1.09005 * 109.70170 * 174.49411 * 15 14 13 36 36 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 37 37 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 38 38 H 1.08001 * 125.96153 * 359.97438 * 21 20 19 39 39 H 1.08001 * 125.52120 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.58475 * 173.14651 * 25 16 15 41 41 H 1.08996 * 109.58975 * 293.57557 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3789 -4.7125 -0.8413 13 6 1.8240 -6.1419 -0.1257 14 6 0.8285 -7.3036 -0.1603 15 6 0.0313 -7.3268 1.1477 16 7 -0.5860 -6.0087 1.3486 17 6 -1.9118 -5.8971 1.5641 18 8 -2.4095 -4.8034 1.7281 19 6 -2.7759 -7.1313 1.6002 20 7 -4.1676 -6.7460 1.8472 21 6 -5.2360 -7.0585 1.0936 22 7 -6.2946 -6.5283 1.6503 23 6 -5.9434 -5.8733 2.7562 24 7 -4.6514 -5.9825 2.9220 25 6 0.2683 -4.8143 1.3042 26 1 -0.4849 0.8401 -0.0004 27 1 0.3554 -2.3881 -0.0002 28 1 2.6846 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8894 30 1 2.4906 -6.2601 0.7286 31 1 2.4095 -6.1379 -1.0452 32 1 1.3694 -8.2432 -0.2733 33 1 0.1459 -7.1730 -1.0000 34 1 0.7004 -7.5476 1.9794 35 1 -0.7454 -8.0894 1.0912 36 1 -2.4341 -7.7910 2.3978 37 1 -2.7072 -7.6510 0.6445 38 1 -5.2228 -7.6449 0.1867 39 1 -6.6175 -5.3416 3.4113 40 1 -0.3523 -3.9193 1.3484 41 1 0.9571 -4.8260 2.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752812082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:59 Heat of formation + Delta-G solvation = 74.799459 kcal Electronic energy + Delta-G solvation = -23550.937680 eV Core-core repulsion = 20082.466197 eV Total energy + Delta-G solvation = -3468.471483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.14393 -40.20859 -37.73548 -35.02134 -34.15393 -32.95847 -31.77545 -31.26006 -29.95943 -28.44115 -25.58471 -25.19436 -23.20959 -22.34370 -22.06563 -21.46835 -20.25757 -19.11194 -17.74882 -17.34377 -16.91705 -15.91676 -15.83513 -15.27265 -14.91145 -14.70459 -14.61475 -14.20735 -14.17114 -13.62530 -13.42885 -13.40307 -13.00478 -12.78806 -12.49989 -12.37693 -11.94015 -11.60497 -11.20158 -11.05197 -10.85362 -10.70091 -10.45790 -10.36079 -10.29593 -10.10574 -10.01466 -9.82855 -9.62934 -9.49747 -8.85623 -8.62802 -6.89704 -5.71265 -3.01669 1.52085 2.04740 2.49436 2.88038 2.94389 3.46702 3.50607 3.52679 4.06574 4.19833 4.27053 4.51803 4.61050 4.63558 4.73500 4.77793 4.87262 5.10975 5.14824 5.22772 5.27196 5.56310 5.61078 5.70336 5.74631 5.86705 6.01483 6.05609 6.09609 6.15879 6.32759 6.35444 6.48398 6.51300 6.63732 6.73222 6.83474 7.31467 7.72232 7.98884 8.10433 8.46179 9.57074 10.14424 10.48326 11.50907 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.003963 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.326349 B = 7064.183048 C = 8666.550784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.134 4.134 15 C 0.104 3.896 16 N -0.610 5.610 17 C 0.496 3.504 18 O -0.498 6.498 19 C 0.113 3.887 20 N -0.370 5.370 21 C 0.253 3.747 22 N -0.545 5.545 23 C 0.192 3.808 24 N -0.287 5.287 25 C 0.122 3.878 26 H 0.256 0.744 27 H 0.385 0.615 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.218 0.782 39 H 0.217 0.783 40 H 0.104 0.896 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 -23.431 1.576 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.127 4.127 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.172 4.172 15 C -0.019 4.019 16 N -0.345 5.345 17 C 0.280 3.720 18 O -0.371 6.371 19 C -0.014 4.014 20 N -0.161 5.161 21 C -0.044 4.044 22 N -0.272 5.272 23 C -0.111 4.111 24 N -0.113 5.113 25 C 0.001 3.999 26 H 0.066 0.934 27 H 0.219 0.781 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.235 0.765 39 H 0.233 0.767 40 H 0.122 0.878 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.569 -22.409 2.155 22.793 hybrid contribution 0.428 0.778 -0.303 0.938 sum -3.141 -21.631 1.851 21.936 Atomic orbital electron populations 1.69665 1.05100 1.25831 1.57157 1.24763 0.95478 0.97706 1.02834 0.86278 0.78513 0.83643 0.77789 1.21291 1.21668 1.21258 1.19155 0.90937 0.84178 1.43369 0.91260 1.42407 1.05913 0.99946 1.89543 1.20627 0.92925 0.85140 0.98035 1.21618 0.97995 0.95256 0.97812 0.90845 1.21525 0.97479 0.93622 1.02484 1.21919 0.98731 0.99376 0.97181 1.21791 0.97549 0.84021 0.98511 1.48156 1.06597 1.08344 1.71398 1.20345 0.82596 0.90664 0.78385 1.90879 1.72228 1.27346 1.46628 1.21642 0.78019 0.96708 1.04981 1.50009 1.07323 1.39603 1.19187 1.26043 0.82034 0.98325 0.98008 1.70515 1.29451 1.16651 1.10595 1.26024 0.91353 0.98510 0.95238 1.78219 1.12204 1.13279 1.07631 1.21664 0.93240 0.87694 0.97337 0.93384 0.78122 0.96244 0.96041 0.91650 0.91380 0.90677 0.91430 0.90892 0.90463 0.86589 0.85427 0.76548 0.76715 0.87823 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.25 -7.02 9.99 -15.06 -0.15 -7.17 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.96 5.38 -59.91 -0.32 -19.28 16 10 C 0.16 3.17 5.66 -4.04 -0.02 3.15 16 11 C -0.11 -1.66 2.36 -90.72 -0.21 -1.87 16 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.23 5.17 -26.69 -0.14 -1.36 16 14 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 15 C 0.10 0.78 6.34 -3.71 -0.02 0.76 16 16 N -0.61 -7.58 2.98 -173.03 -0.52 -8.10 16 17 C 0.50 6.99 7.74 -10.98 -0.08 6.90 16 18 O -0.50 -10.13 15.17 5.56 0.08 -10.04 16 19 C 0.11 0.99 5.38 -5.19 -0.03 0.96 16 20 N -0.37 -4.44 3.40 -63.81 -0.22 -4.66 16 21 C 0.25 2.60 12.63 -90.65 -1.14 1.46 16 22 N -0.55 -7.06 11.19 -15.83 -0.18 -7.24 16 23 C 0.19 2.54 13.03 -91.81 -1.20 1.34 16 24 N -0.29 -4.36 11.84 29.29 0.35 -4.01 16 25 C 0.12 1.97 5.49 -3.93 -0.02 1.95 16 26 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 27 H 0.38 10.69 6.89 -40.82 -0.28 10.41 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.31 5.93 -51.93 -0.31 0.01 16 36 H 0.12 0.72 7.94 -51.93 -0.41 0.31 16 37 H 0.13 0.55 7.64 -51.93 -0.40 0.15 16 38 H 0.22 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.22 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.10 2.18 6.20 -51.93 -0.32 1.86 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -39.35 339.38 -9.18 -48.54 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.92 Total: 5.84 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.28 Total: 4.48 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -0.16 Total: -71.86 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -39.35 -9.18 -48.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752812082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.335 kcal (2) G-P(sol) polarization free energy of solvation -39.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds