Wall clock time and date at job start Tue Mar 31 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00117 * 2 1 4 4 H 1.48500 * 109.47181 * 239.99568 * 3 2 1 5 5 H 1.48494 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47023 * 120.00310 * 3 2 1 7 7 C 1.38813 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00085 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99661 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46943 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.49965 * 54.93486 * 11 10 9 13 13 C 1.53037 * 109.49715 * 175.00454 * 11 10 9 14 14 C 1.53038 * 109.53983 * 181.34909 * 13 11 10 15 15 C 1.53197 * 109.30963 * 298.63302 * 14 13 11 16 16 N 1.46926 * 108.77484 * 54.63204 * 15 14 13 17 17 C 1.34777 * 120.62694 * 126.37299 * 16 15 14 18 18 O 1.21278 * 119.99854 * 180.02562 * 17 16 15 19 19 C 1.50703 * 120.00161 * 359.97438 * 17 16 15 20 20 N 1.46505 * 109.47064 * 180.02562 * 19 17 16 21 21 C 1.34430 * 126.82083 * 124.99865 * 20 19 17 22 22 N 1.30833 * 108.07734 * 179.97438 * 21 20 19 23 23 C 1.33243 * 109.82413 * 359.97438 * 22 21 20 24 24 N 1.30715 * 108.94993 * 359.75621 * 23 22 21 25 25 C 1.46922 * 118.74006 * 306.64082 * 16 15 14 26 26 H 0.97000 * 119.99451 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00338 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47365 * 60.00210 * 10 9 7 29 29 H 1.08996 * 109.47582 * 299.99834 * 10 9 7 30 30 H 1.09001 * 109.46501 * 61.32476 * 13 11 10 31 31 H 1.09004 * 109.44815 * 301.36136 * 13 11 10 32 32 H 1.09000 * 109.50307 * 178.68276 * 14 13 11 33 33 H 1.09001 * 109.50115 * 58.57957 * 14 13 11 34 34 H 1.09001 * 109.58130 * 294.84241 * 15 14 13 35 35 H 1.09005 * 109.70170 * 174.49411 * 15 14 13 36 36 H 1.09002 * 109.47152 * 60.00245 * 19 17 16 37 37 H 1.09001 * 109.46980 * 300.00345 * 19 17 16 38 38 H 1.08001 * 125.96153 * 359.97438 * 21 20 19 39 39 H 1.08001 * 125.52120 * 179.97438 * 23 22 21 40 40 H 1.09003 * 109.58475 * 173.14651 * 25 16 15 41 41 H 1.08996 * 109.58975 * 293.57557 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3789 -4.7125 -0.8413 13 6 1.8240 -6.1419 -0.1257 14 6 0.8285 -7.3036 -0.1603 15 6 0.0313 -7.3268 1.1477 16 7 -0.5860 -6.0087 1.3486 17 6 -1.9118 -5.8971 1.5641 18 8 -2.4095 -4.8034 1.7281 19 6 -2.7759 -7.1313 1.6002 20 7 -4.1676 -6.7460 1.8472 21 6 -5.2360 -7.0585 1.0936 22 7 -6.2946 -6.5283 1.6503 23 6 -5.9434 -5.8733 2.7562 24 7 -4.6514 -5.9825 2.9220 25 6 0.2683 -4.8143 1.3042 26 1 -0.4849 0.8401 -0.0004 27 1 0.3554 -2.3881 -0.0002 28 1 2.6846 -3.7146 0.8905 29 1 2.6846 -3.7146 -0.8894 30 1 2.4906 -6.2601 0.7286 31 1 2.4095 -6.1379 -1.0452 32 1 1.3694 -8.2432 -0.2733 33 1 0.1459 -7.1730 -1.0000 34 1 0.7004 -7.5476 1.9794 35 1 -0.7454 -8.0894 1.0912 36 1 -2.4341 -7.7910 2.3978 37 1 -2.7072 -7.6510 0.6445 38 1 -5.2228 -7.6449 0.1867 39 1 -6.6175 -5.3416 3.4113 40 1 -0.3523 -3.9193 1.3484 41 1 0.9571 -4.8260 2.1489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752812082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:58 Heat of formation + Delta-G solvation = 46.590230 kcal Electronic energy + Delta-G solvation = -23552.160924 eV Core-core repulsion = 20082.466197 eV Total energy + Delta-G solvation = -3469.694727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.00528 -41.25094 -38.90491 -36.65013 -35.11735 -34.39747 -33.08988 -32.16699 -31.58118 -29.41325 -27.15404 -26.21808 -24.88372 -23.26525 -22.90142 -22.67119 -21.48706 -20.07042 -19.21410 -18.57411 -18.11768 -16.90200 -16.78424 -16.72485 -16.30347 -15.83920 -15.54978 -15.39758 -15.32834 -15.00470 -14.85722 -14.28971 -14.14637 -14.02103 -13.76963 -13.57155 -13.06228 -12.88791 -12.78719 -12.65986 -12.23304 -12.07347 -11.95265 -11.83604 -11.57760 -11.33088 -11.23764 -11.02285 -10.98193 -10.77096 -10.48205 -9.68189 -9.05333 -7.98333 -5.29230 0.68235 1.31926 1.42275 1.46853 1.49201 1.53302 1.93457 2.05305 2.52619 3.27854 3.34810 3.53384 3.63909 3.73068 3.88473 3.90076 4.04705 4.06996 4.13082 4.18842 4.33399 4.39157 4.45840 4.64258 4.75108 4.83311 4.90413 4.91970 5.02262 5.14722 5.23959 5.25293 5.35119 5.43924 5.45764 5.50131 5.53035 5.89103 6.21953 6.36584 7.08261 7.13704 7.27422 8.04497 8.25831 9.25012 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.003963 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.326349 B = 7064.183048 C = 8666.550784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.080 4.080 3 Si 0.978 3.022 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.156 3.844 11 C -0.093 4.093 12 H 0.051 0.949 13 C -0.109 4.109 14 C -0.127 4.127 15 C 0.095 3.905 16 N -0.604 5.604 17 C 0.485 3.515 18 O -0.578 6.578 19 C 0.118 3.882 20 N -0.378 5.378 21 C 0.264 3.736 22 N -0.577 5.577 23 C 0.183 3.817 24 N -0.341 5.341 25 C 0.130 3.870 26 H 0.250 0.750 27 H 0.369 0.631 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.186 0.814 38 H 0.271 0.729 39 H 0.233 0.767 40 H 0.042 0.958 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -27.234 0.668 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.029 3.971 11 C -0.112 4.112 12 H 0.070 0.930 13 C -0.147 4.147 14 C -0.165 4.165 15 C -0.025 4.025 16 N -0.337 5.337 17 C 0.272 3.728 18 O -0.456 6.456 19 C -0.007 4.007 20 N -0.170 5.170 21 C -0.032 4.032 22 N -0.304 5.304 23 C -0.120 4.120 24 N -0.168 5.168 25 C 0.006 3.994 26 H 0.059 0.941 27 H 0.201 0.799 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.168 0.832 37 H 0.203 0.797 38 H 0.287 0.713 39 H 0.249 0.751 40 H 0.060 0.940 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.947 -26.310 1.236 26.411 hybrid contribution 0.037 1.880 -0.046 1.881 sum -1.910 -24.430 1.190 24.533 Atomic orbital electron populations 1.69872 1.07016 1.26144 1.59432 1.25687 0.96309 1.01573 1.03571 0.85146 0.77111 0.78684 0.78439 1.19830 1.22375 1.20139 1.19667 0.91621 0.85380 1.41433 0.90181 1.42689 1.05476 1.01584 1.89458 1.20878 0.93752 0.84376 0.98063 1.21457 0.96924 0.96450 0.96393 0.93015 1.21533 0.98029 0.91812 1.03277 1.21929 0.98091 0.99344 0.97131 1.22294 0.99264 0.81954 0.99027 1.48249 1.06121 1.09085 1.70276 1.21434 0.83178 0.91551 0.76640 1.90855 1.73757 1.30771 1.50232 1.22062 0.75432 0.93944 1.09230 1.50175 1.08753 1.39366 1.18665 1.27079 0.80833 0.96923 0.98331 1.70513 1.31113 1.17800 1.11003 1.26458 0.91331 0.98407 0.95782 1.78118 1.13131 1.15348 1.10181 1.21223 0.92722 0.87681 0.97754 0.94149 0.79933 0.95756 0.95465 0.90591 0.90776 0.86702 0.91585 0.89322 0.85617 0.83201 0.79690 0.71314 0.75137 0.93954 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.33 13.06 21.65 0.28 -64.04 16 2 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 3 Si 0.98 48.26 29.55 68.60 2.03 50.28 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.25 -14.62 9.99 84.03 0.84 -13.78 16 8 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.75 -40.50 5.38 -343.44 -1.85 -42.35 16 10 C 0.16 6.26 5.66 86.38 0.49 6.75 16 11 C -0.09 -2.87 2.36 -10.86 -0.03 -2.90 16 12 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.11 -2.04 5.17 30.62 0.16 -1.88 16 14 C -0.13 -1.34 6.08 30.67 0.19 -1.15 16 15 C 0.10 0.96 6.34 86.36 0.55 1.50 16 16 N -0.60 -14.23 2.98 -819.72 -2.44 -16.67 16 17 C 0.48 13.41 7.74 87.66 0.68 14.09 16 18 O -0.58 -25.06 15.17 -3.02 -0.05 -25.10 16 19 C 0.12 1.64 5.38 85.63 0.46 2.10 16 20 N -0.38 -8.43 3.40 -355.78 -1.21 -9.64 16 21 C 0.26 4.78 12.63 180.36 2.28 7.06 16 22 N -0.58 -14.53 11.19 -204.00 -2.28 -16.82 16 23 C 0.18 4.98 13.03 180.76 2.36 7.33 16 24 N -0.34 -10.55 11.84 -61.24 -0.72 -11.28 16 25 C 0.13 4.35 5.49 86.22 0.47 4.83 16 26 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 27 H 0.37 22.01 6.89 -92.71 -0.64 21.37 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.13 0.11 5.93 -2.38 -0.01 0.10 16 36 H 0.15 1.11 7.94 -2.39 -0.02 1.09 16 37 H 0.19 0.37 7.64 -2.39 -0.02 0.35 16 38 H 0.27 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.23 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.04 1.96 6.20 -2.39 -0.01 1.94 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -96.46 339.38 3.07 -93.39 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.40 Total: 22.65 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 8.91 Total: 19.58 kcal Atomic # 7 Polarization: -152.58 SS G_CDS: -8.22 Total: -160.80 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.10 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.28 kcal Total: -96.46 3.07 -93.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752812082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.979 kcal (2) G-P(sol) polarization free energy of solvation -96.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds