Wall clock time and date at job start Tue Mar 31 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47495 * 2 1 4 4 C 1.36940 * 119.99886 * 275.40574 * 3 2 1 5 5 H 1.07999 * 119.99952 * 38.58190 * 4 3 2 6 6 C 1.38811 * 119.99947 * 218.58895 * 4 3 2 7 7 N 1.31624 * 119.99995 * 20.34323 * 6 4 3 8 8 Si 1.86806 * 120.00057 * 200.34870 * 6 4 3 9 9 H 1.48501 * 109.46669 * 89.99885 * 8 6 4 10 10 H 1.48496 * 109.46935 * 209.99562 * 8 6 4 11 11 H 1.48493 * 109.46944 * 329.99741 * 8 6 4 12 12 C 1.46502 * 120.00184 * 95.39837 * 3 2 1 13 13 C 1.53002 * 109.47026 * 270.00102 * 12 3 2 14 14 N 1.46501 * 109.46921 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21539 * 119.99795 * 359.72957 * 15 14 13 17 17 C 1.47877 * 120.00009 * 180.02562 * 15 14 13 18 18 C 1.36296 * 119.75844 * 355.06099 * 17 15 14 19 19 C 1.40399 * 119.91402 * 180.02562 * 18 17 15 20 20 C 1.36119 * 119.41033 * 359.97438 * 19 18 17 21 21 C 1.41239 * 119.51200 * 0.02562 * 20 19 18 22 22 O 1.21955 * 119.95691 * 180.02562 * 21 20 19 23 23 N 1.34675 * 120.08436 * 359.72417 * 21 20 19 24 24 C 1.46502 * 119.70250 * 180.29606 * 23 21 20 25 25 H 1.08998 * 109.47528 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47445 * 300.00510 * 1 2 3 27 27 H 1.09013 * 109.47180 * 60.00365 * 1 2 3 28 28 H 1.09007 * 109.47331 * 239.99560 * 2 1 3 29 29 H 1.09001 * 109.47485 * 119.99738 * 2 1 3 30 30 H 0.97001 * 119.99967 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46653 * 150.00781 * 12 3 2 32 32 H 1.08995 * 109.47181 * 30.00377 * 12 3 2 33 33 H 1.09007 * 109.46777 * 60.00136 * 13 12 3 34 34 H 1.08995 * 109.47365 * 300.00162 * 13 12 3 35 35 H 0.96998 * 119.99622 * 0.02562 * 14 13 12 36 36 H 1.08007 * 120.04251 * 0.02562 * 18 17 15 37 37 H 1.08000 * 120.29932 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.24103 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.46750 * 242.49213 * 24 23 21 40 40 H 1.08997 * 109.47411 * 2.49674 * 24 23 21 41 41 H 1.09001 * 109.46788 * 122.49928 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1413 2.0639 -1.1807 5 1 1.3987 1.9413 -1.9552 6 6 3.2204 2.9135 -1.3820 7 7 4.3093 2.7780 -0.6551 8 14 3.1271 4.2494 -2.6845 9 1 2.5801 5.4913 -2.0813 10 1 4.4869 4.5158 -3.2185 11 1 2.2403 3.8030 -3.7886 12 6 2.3751 2.0320 1.2631 13 6 1.1453 2.7374 1.8385 14 7 1.5019 3.3877 3.1019 15 6 0.5706 4.0748 3.7925 16 8 -0.5639 4.1590 3.3647 17 6 0.9307 4.7317 5.0675 18 6 2.1768 4.5558 5.5908 19 6 2.5220 5.1776 6.8014 20 6 1.6035 5.9526 7.4405 21 6 0.3194 6.1180 6.8761 22 8 -0.5097 6.8110 7.4416 23 7 0.0113 5.5164 5.7113 24 6 -1.3211 5.6989 5.1301 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.0635 3.3715 -0.7960 31 1 3.1632 2.7635 1.0849 32 1 2.7284 1.2823 1.9710 33 1 0.3571 2.0058 2.0166 34 1 0.7920 3.4870 1.1306 35 1 2.4085 3.3243 3.4409 36 1 2.8979 3.9390 5.0748 37 1 3.5078 5.0428 7.2214 38 1 1.8546 6.4368 8.3727 39 1 -1.8293 4.7361 5.0770 40 1 -1.8991 6.3810 5.7535 41 1 -1.2261 6.1153 4.1273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753088632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:50 Heat of formation + Delta-G solvation = -10.210458 kcal Electronic energy + Delta-G solvation = -23527.243696 eV Core-core repulsion = 20022.793155 eV Total energy + Delta-G solvation = -3504.450541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.64843 -39.41853 -36.89975 -36.46786 -35.08637 -34.06161 -31.98136 -30.98551 -29.42662 -27.74399 -27.52118 -25.07335 -24.17624 -22.80776 -21.98681 -20.91316 -20.33868 -18.17510 -17.52918 -17.12935 -16.63467 -16.38232 -15.74338 -15.37301 -15.23612 -14.80453 -14.77693 -13.98954 -13.93587 -13.65620 -13.25188 -12.87321 -12.77393 -12.61832 -12.48156 -12.35642 -12.13431 -11.85787 -11.62128 -11.20735 -10.86420 -10.78424 -10.59596 -10.34325 -10.29775 -10.18843 -10.02063 -9.93258 -9.70627 -8.84799 -8.59949 -8.21060 -6.72455 -5.93902 -3.54608 0.25421 1.46119 2.32165 2.80233 3.13744 3.29259 3.36850 3.38781 3.50568 4.31509 4.39505 4.40708 4.62638 4.95462 4.97624 5.18233 5.37645 5.42239 5.42331 5.61365 5.74713 5.80422 5.85048 5.91428 5.94986 6.02246 6.17023 6.25879 6.29397 6.37163 6.52791 6.58806 6.80983 6.83149 6.85897 7.06972 7.36988 7.52982 7.71587 7.81329 8.09853 8.38770 9.04371 9.65218 10.23426 11.06343 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.003773 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.081240 B = 7419.762361 C = 7837.643294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.264 4.264 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.137 3.863 13 C 0.095 3.905 14 N -0.697 5.697 15 C 0.545 3.455 16 O -0.528 6.528 17 C 0.127 3.873 18 C -0.188 4.188 19 C -0.023 4.023 20 C -0.224 4.224 21 C 0.512 3.488 22 O -0.553 6.553 23 N -0.476 5.476 24 C 0.064 3.936 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.256 0.744 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 1.185 12.617 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.299 5.299 4 C -0.394 4.394 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.216 1.216 11 H -0.201 1.201 12 C 0.009 3.991 13 C -0.030 4.030 14 N -0.348 5.348 15 C 0.328 3.672 16 O -0.406 6.406 17 C 0.015 3.985 18 C -0.213 4.213 19 C -0.045 4.045 20 C -0.246 4.246 21 C 0.313 3.687 22 O -0.436 6.436 23 N -0.187 5.187 24 C -0.077 4.077 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.911 1.728 12.556 13.004 hybrid contribution 0.492 0.696 -0.512 0.994 sum -2.419 2.424 12.044 12.521 Atomic orbital electron populations 1.22388 0.99866 0.99182 1.01355 1.20896 0.91749 0.86883 0.99012 1.43596 1.76022 1.08283 1.01988 1.19047 1.04058 1.22028 0.94248 0.91999 1.25218 0.94137 1.01059 0.98022 1.69976 1.02945 1.37726 1.42273 0.86378 0.77033 0.82327 0.81596 1.21187 1.21604 1.20091 1.21067 0.94285 0.97058 0.86654 1.22703 1.01738 0.96726 0.81800 1.46060 1.12820 1.51676 1.24265 1.17883 0.85939 0.80036 0.83309 1.90821 1.19774 1.60725 1.69244 1.20365 0.90316 0.93695 0.94143 1.20960 0.95103 1.06250 0.99015 1.21419 0.99549 0.91106 0.92406 1.22360 0.93095 1.05428 1.03752 1.17340 0.89946 0.81314 0.80059 1.90923 1.51225 1.40920 1.60491 1.45435 1.14176 1.38766 1.20326 1.22330 0.81207 1.04463 0.99685 0.94376 0.93731 0.93072 0.93470 0.94665 0.93408 0.88309 0.95045 0.92363 0.91135 0.76302 0.83049 0.83873 0.83014 0.89392 0.89035 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.21 37.15 0.38 -2.53 16 2 C 0.14 2.75 6.44 -4.05 -0.03 2.73 16 3 N -0.58 -13.13 2.43 -173.24 -0.42 -13.55 16 4 C -0.26 -6.74 9.45 -15.06 -0.14 -6.88 16 5 H 0.06 1.60 7.91 -52.49 -0.42 1.19 16 6 C 0.02 0.42 4.97 -17.43 -0.09 0.33 16 7 N -0.89 -23.48 11.48 55.49 0.64 -22.85 16 8 Si 0.90 20.53 29.60 -169.99 -5.03 15.50 16 9 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.14 2.76 5.44 -4.04 -0.02 2.74 16 13 C 0.09 1.70 6.00 -4.04 -0.02 1.68 16 14 N -0.70 -9.97 5.50 -61.24 -0.34 -10.30 16 15 C 0.54 8.05 7.71 -12.31 -0.09 7.95 16 16 O -0.53 -9.26 13.20 5.33 0.07 -9.19 16 17 C 0.13 1.59 6.63 -82.34 -0.55 1.04 16 18 C -0.19 -1.79 9.49 -39.47 -0.37 -2.16 16 19 C -0.02 -0.19 10.08 -39.53 -0.40 -0.59 16 20 C -0.22 -2.37 10.00 -39.20 -0.39 -2.76 16 21 C 0.51 7.26 7.43 -15.17 -0.11 7.14 16 22 O -0.55 -9.53 16.39 4.96 0.08 -9.44 16 23 N -0.48 -6.51 3.02 -122.81 -0.37 -6.88 16 24 C 0.06 0.85 8.93 59.85 0.53 1.38 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.77 6.65 -51.93 -0.35 0.42 16 27 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 29 H 0.03 0.63 7.83 -51.93 -0.41 0.23 16 30 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.10 2.25 5.55 -51.93 -0.29 1.97 16 32 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 33 H 0.06 1.06 6.65 -51.92 -0.35 0.72 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.40 4.61 6.47 -40.82 -0.26 4.35 16 36 H 0.15 1.06 6.32 -52.48 -0.33 0.73 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.09 1.17 7.24 -51.93 -0.38 0.79 16 40 H 0.09 1.19 6.87 -51.93 -0.36 0.83 16 41 H 0.09 1.19 7.22 -51.93 -0.37 0.82 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -30.86 339.21 -7.15 -38.00 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.58 Total: 3.52 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.31 Total: 10.08 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.49 Total: -53.58 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.15 Total: -18.63 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.86 -7.15 -38.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753088632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.790 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds