Wall clock time and date at job start Tue Mar 31 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47495 * 2 1 4 4 C 1.36940 * 119.99886 * 275.40574 * 3 2 1 5 5 H 1.07999 * 119.99952 * 38.58190 * 4 3 2 6 6 C 1.38811 * 119.99947 * 218.58895 * 4 3 2 7 7 N 1.31624 * 119.99995 * 20.34323 * 6 4 3 8 8 Si 1.86806 * 120.00057 * 200.34870 * 6 4 3 9 9 H 1.48501 * 109.46669 * 89.99885 * 8 6 4 10 10 H 1.48496 * 109.46935 * 209.99562 * 8 6 4 11 11 H 1.48493 * 109.46944 * 329.99741 * 8 6 4 12 12 C 1.46502 * 120.00184 * 95.39837 * 3 2 1 13 13 C 1.53002 * 109.47026 * 270.00102 * 12 3 2 14 14 N 1.46501 * 109.46921 * 179.97438 * 13 12 3 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 12 16 16 O 1.21539 * 119.99795 * 359.72957 * 15 14 13 17 17 C 1.47877 * 120.00009 * 180.02562 * 15 14 13 18 18 C 1.36296 * 119.75844 * 355.06099 * 17 15 14 19 19 C 1.40399 * 119.91402 * 180.02562 * 18 17 15 20 20 C 1.36119 * 119.41033 * 359.97438 * 19 18 17 21 21 C 1.41239 * 119.51200 * 0.02562 * 20 19 18 22 22 O 1.21955 * 119.95691 * 180.02562 * 21 20 19 23 23 N 1.34675 * 120.08436 * 359.72417 * 21 20 19 24 24 C 1.46502 * 119.70250 * 180.29606 * 23 21 20 25 25 H 1.08998 * 109.47528 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47445 * 300.00510 * 1 2 3 27 27 H 1.09013 * 109.47180 * 60.00365 * 1 2 3 28 28 H 1.09007 * 109.47331 * 239.99560 * 2 1 3 29 29 H 1.09001 * 109.47485 * 119.99738 * 2 1 3 30 30 H 0.97001 * 119.99967 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46653 * 150.00781 * 12 3 2 32 32 H 1.08995 * 109.47181 * 30.00377 * 12 3 2 33 33 H 1.09007 * 109.46777 * 60.00136 * 13 12 3 34 34 H 1.08995 * 109.47365 * 300.00162 * 13 12 3 35 35 H 0.96998 * 119.99622 * 0.02562 * 14 13 12 36 36 H 1.08007 * 120.04251 * 0.02562 * 18 17 15 37 37 H 1.08000 * 120.29932 * 180.02562 * 19 18 17 38 38 H 1.08006 * 120.24103 * 179.97438 * 20 19 18 39 39 H 1.09002 * 109.46750 * 242.49213 * 24 23 21 40 40 H 1.08997 * 109.47411 * 2.49674 * 24 23 21 41 41 H 1.09001 * 109.46788 * 122.49928 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1413 2.0639 -1.1807 5 1 1.3987 1.9413 -1.9552 6 6 3.2204 2.9135 -1.3820 7 7 4.3093 2.7780 -0.6551 8 14 3.1271 4.2494 -2.6845 9 1 2.5801 5.4913 -2.0813 10 1 4.4869 4.5158 -3.2185 11 1 2.2403 3.8030 -3.7886 12 6 2.3751 2.0320 1.2631 13 6 1.1453 2.7374 1.8385 14 7 1.5019 3.3877 3.1019 15 6 0.5706 4.0748 3.7925 16 8 -0.5639 4.1590 3.3647 17 6 0.9307 4.7317 5.0675 18 6 2.1768 4.5558 5.5908 19 6 2.5220 5.1776 6.8014 20 6 1.6035 5.9526 7.4405 21 6 0.3194 6.1180 6.8761 22 8 -0.5097 6.8110 7.4416 23 7 0.0113 5.5164 5.7113 24 6 -1.3211 5.6989 5.1301 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.0635 3.3715 -0.7960 31 1 3.1632 2.7635 1.0849 32 1 2.7284 1.2823 1.9710 33 1 0.3571 2.0058 2.0166 34 1 0.7920 3.4870 1.1306 35 1 2.4085 3.3243 3.4409 36 1 2.8979 3.9390 5.0748 37 1 3.5078 5.0428 7.2214 38 1 1.8546 6.4368 8.3727 39 1 -1.8293 4.7361 5.0770 40 1 -1.8991 6.3810 5.7535 41 1 -1.2261 6.1153 4.1273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753088632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:48 Heat of formation + Delta-G solvation = -30.274153 kcal Electronic energy + Delta-G solvation = -23528.113723 eV Core-core repulsion = 20022.793155 eV Total energy + Delta-G solvation = -3505.320568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.65252 -40.61743 -38.20605 -37.83348 -36.27649 -35.17851 -33.81519 -32.17025 -30.83081 -29.12504 -28.68865 -26.41802 -25.61366 -23.85243 -23.30337 -22.23551 -21.91568 -19.36097 -18.53225 -18.47396 -17.94095 -17.47105 -16.99467 -16.89328 -16.52037 -16.26065 -15.62401 -15.58154 -15.43652 -15.04512 -14.55752 -14.16377 -14.08385 -13.83257 -13.76978 -13.48452 -13.21664 -13.15836 -12.99530 -12.84407 -12.63907 -12.37102 -12.27641 -12.02360 -11.66330 -11.51605 -11.41911 -11.16247 -10.93309 -10.54333 -10.15962 -9.18330 -8.56789 -7.84871 -5.49065 -0.65352 0.57737 1.30191 1.45273 1.49953 1.55700 1.68621 2.00579 2.50451 2.56967 3.20907 3.30035 3.53919 3.80626 3.85058 4.11479 4.21898 4.32683 4.33909 4.38882 4.42837 4.50158 4.67789 4.76377 4.83715 4.84359 4.87426 4.95554 5.11800 5.14543 5.18734 5.29856 5.32295 5.38561 5.58668 5.67700 5.76302 5.86224 6.36095 6.48865 6.79815 6.96504 7.18019 7.84268 8.36065 9.10637 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.003773 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.081240 B = 7419.762361 C = 7837.643294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.597 5.597 4 C -0.272 4.272 5 H 0.050 0.950 6 C -0.021 4.021 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.274 1.274 12 C 0.143 3.857 13 C 0.118 3.882 14 N -0.688 5.688 15 C 0.548 3.452 16 O -0.562 6.562 17 C 0.094 3.906 18 C -0.154 4.154 19 C -0.003 4.003 20 C -0.227 4.227 21 C 0.496 3.504 22 O -0.600 6.600 23 N -0.483 5.483 24 C 0.071 3.929 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.417 0.583 36 H 0.184 0.816 37 H 0.194 0.806 38 H 0.171 0.829 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 0.487 14.049 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.403 4.403 5 H 0.067 0.933 6 C -0.220 4.220 7 N -0.551 5.551 8 Si 0.775 3.225 9 H -0.216 1.216 10 H -0.216 1.216 11 H -0.199 1.199 12 C 0.016 3.984 13 C -0.008 4.008 14 N -0.340 5.340 15 C 0.333 3.667 16 O -0.443 6.443 17 C -0.016 4.016 18 C -0.179 4.179 19 C -0.024 4.024 20 C -0.249 4.249 21 C 0.299 3.701 22 O -0.486 6.486 23 N -0.194 5.194 24 C -0.071 4.071 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.256 0.744 36 H 0.201 0.799 37 H 0.211 0.789 38 H 0.189 0.811 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.128 0.998 13.989 14.070 hybrid contribution 0.000 0.846 -0.919 1.249 sum -1.127 1.843 13.070 13.247 Atomic orbital electron populations 1.22224 0.98072 1.00803 1.00416 1.21012 0.93055 0.85445 0.99352 1.43831 1.76379 1.09569 1.02008 1.19149 1.03579 1.22429 0.95125 0.93267 1.25696 0.94058 1.02505 0.99724 1.70050 1.03236 1.38337 1.43434 0.85607 0.76721 0.80208 0.79922 1.21584 1.21595 1.19943 1.20959 0.94171 0.96982 0.86260 1.22121 1.00506 0.95599 0.82552 1.45752 1.13678 1.51520 1.23074 1.18166 0.85294 0.79389 0.83842 1.90807 1.21284 1.61854 1.70313 1.20175 0.91629 0.95794 0.93999 1.21525 0.93717 1.03948 0.98668 1.21901 1.00896 0.88648 0.90955 1.22576 0.91653 1.06069 1.04586 1.17996 0.91065 0.81048 0.79944 1.90892 1.52761 1.43221 1.61738 1.45433 1.14260 1.39213 1.20525 1.22162 0.81804 1.04008 0.99090 0.91435 0.93767 0.94850 0.94703 0.92679 0.93585 0.90667 0.92988 0.92511 0.94551 0.74421 0.79925 0.78893 0.81111 0.89840 0.89364 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.21 71.98 0.73 -4.44 16 2 C 0.14 5.19 6.44 86.38 0.56 5.74 16 3 N -0.60 -26.84 2.43 -702.01 -1.70 -28.54 16 4 C -0.27 -13.98 9.45 84.03 0.79 -13.18 16 5 H 0.05 2.60 7.91 -2.91 -0.02 2.58 16 6 C -0.02 -1.09 4.97 84.86 0.42 -0.67 16 7 N -0.91 -47.83 11.48 21.65 0.25 -47.58 16 8 Si 0.95 42.37 29.60 68.60 2.03 44.40 16 9 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.14 5.64 5.44 86.38 0.47 6.11 16 13 C 0.12 4.18 6.00 86.38 0.52 4.70 16 14 N -0.69 -18.64 5.50 -465.94 -2.56 -21.20 16 15 C 0.55 15.78 7.71 86.80 0.67 16.45 16 16 O -0.56 -20.11 13.20 -3.84 -0.05 -20.16 16 17 C 0.09 2.20 6.63 40.45 0.27 2.47 16 18 C -0.15 -2.28 9.49 22.34 0.21 -2.07 16 19 C 0.00 -0.03 10.08 22.30 0.22 0.19 16 20 C -0.23 -4.11 10.00 22.51 0.23 -3.89 16 21 C 0.50 13.74 7.43 84.99 0.63 14.37 16 22 O -0.60 -21.08 16.39 -5.17 -0.08 -21.16 16 23 N -0.48 -13.10 3.02 -660.61 -1.99 -15.10 16 24 C 0.07 1.97 8.93 127.77 1.14 3.12 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.04 1.46 6.65 -2.39 -0.02 1.44 16 27 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.03 1.39 8.08 -2.38 -0.02 1.37 16 29 H 0.05 1.86 7.83 -2.39 -0.02 1.84 16 30 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 31 H 0.08 3.39 5.55 -2.39 -0.01 3.37 16 32 H 0.05 1.81 7.86 -2.39 -0.02 1.79 16 33 H 0.06 2.04 6.65 -2.38 -0.02 2.02 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.42 8.39 6.47 -92.71 -0.60 7.79 16 36 H 0.18 1.55 6.32 -2.91 -0.02 1.53 16 37 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.08 2.35 7.24 -2.39 -0.02 2.33 16 40 H 0.09 2.46 6.87 -2.39 -0.02 2.44 16 41 H 0.08 2.28 7.22 -2.39 -0.02 2.26 16 Total: -1.00 -69.19 339.21 3.20 -65.99 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.45 Total: 14.45 kcal Atomic # 6 Polarization: 22.03 SS G_CDS: 6.87 Total: 28.90 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -6.01 Total: -112.42 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.14 Total: -41.32 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -69.19 3.20 -65.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753088632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.717 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds