Wall clock time and date at job start Tue Mar 31 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.58108 * 2 1 4 4 C 1.47523 * 125.76754 * 359.97438 * 3 2 1 5 5 O 1.21596 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99946 * 180.02562 * 4 3 2 7 7 C 1.47428 * 125.65119 * 5.19695 * 6 4 3 8 8 C 1.54910 * 104.83469 * 155.89232 * 7 6 4 9 9 C 1.55157 * 101.58204 * 37.01024 * 8 7 6 10 10 C 1.47032 * 125.65028 * 185.22099 * 6 4 3 11 11 H 1.08997 * 110.01082 * 300.52918 * 10 6 4 12 12 C 1.52999 * 109.87942 * 61.62185 * 10 6 4 13 13 N 1.46493 * 109.47230 * 183.44683 * 12 10 6 14 14 C 1.36934 * 120.00621 * 175.01842 * 13 12 10 15 15 H 1.08008 * 119.99394 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00581 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99836 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46963 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.47074 * 300.00131 * 18 16 14 21 21 H 1.48504 * 109.47107 * 60.00184 * 18 16 14 22 22 N 1.34395 * 108.46304 * 180.26112 * 3 2 1 23 23 N 1.28763 * 109.52115 * 359.58547 * 22 3 2 24 24 N 1.34812 * 126.58547 * 180.02562 * 2 1 3 25 25 C 1.46506 * 126.59007 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.46640 * 90.00690 * 1 2 3 27 27 H 1.08999 * 109.46681 * 210.00293 * 1 2 3 28 28 H 1.08997 * 109.47013 * 330.00079 * 1 2 3 29 29 H 1.08999 * 110.36440 * 37.05690 * 7 6 4 30 30 H 1.08996 * 110.46241 * 274.77921 * 7 6 4 31 31 H 1.09000 * 111.00265 * 278.94213 * 8 7 6 32 32 H 1.09001 * 111.00393 * 155.08658 * 8 7 6 33 33 H 1.08997 * 110.72336 * 206.13353 * 9 8 7 34 34 H 1.09005 * 110.71921 * 82.85758 * 9 8 7 35 35 H 1.09005 * 109.47566 * 63.44163 * 12 10 6 36 36 H 1.09003 * 109.47078 * 303.44571 * 12 10 6 37 37 H 0.97003 * 119.99604 * 355.01019 * 13 12 10 38 38 H 0.96993 * 119.99961 * 359.97438 * 17 16 14 39 39 H 1.09004 * 109.46887 * 90.00140 * 25 24 2 40 40 H 1.09003 * 109.47164 * 210.00050 * 25 24 2 41 41 H 1.08998 * 109.47043 * 329.99826 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7627 -0.0006 6 7 2.7816 3.4987 -0.0010 7 6 4.2422 3.3300 -0.1095 8 6 4.7560 4.6771 -0.6763 9 6 3.8222 5.6911 0.0359 10 6 2.4796 4.9336 0.1072 11 1 1.8356 5.2423 -0.7163 12 6 1.7902 5.2210 1.4425 13 7 1.4197 6.6368 1.5061 14 6 0.6963 7.1083 2.5689 15 1 0.3986 6.4361 3.3601 16 6 0.3457 8.4500 2.6293 17 7 0.7080 9.2690 1.6648 18 14 -0.6417 9.0930 4.0789 19 1 -0.8840 10.5479 3.9064 20 1 -1.9420 8.3789 4.1479 21 1 0.1164 8.8634 5.3350 22 7 3.5983 0.6790 -0.0058 23 7 3.6299 -0.6083 -0.0006 24 7 2.3105 -1.0825 -0.0005 25 6 1.8864 -2.4848 -0.0016 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.4801 2.5154 -0.7934 30 1 4.6778 3.1404 0.8714 31 1 4.6272 4.7204 -1.7578 32 1 5.7973 4.8449 -0.4012 33 1 3.7203 6.6019 -0.5542 34 1 4.1907 5.9178 1.0365 35 1 2.4711 4.9864 2.2608 36 1 0.8939 4.6066 1.5283 37 1 1.6868 7.2404 0.7953 38 1 1.2204 8.9351 0.9120 39 1 1.7817 -2.8319 -1.0296 40 1 2.6330 -3.0906 0.5121 41 1 0.9292 -2.5754 0.5118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753600453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:25 Heat of formation + Delta-G solvation = 81.992258 kcal Electronic energy + Delta-G solvation = -23797.035506 eV Core-core repulsion = 20328.875925 eV Total energy + Delta-G solvation = -3468.159580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43246 -39.77370 -37.33212 -35.22028 -34.65830 -32.52526 -31.64220 -31.25732 -28.74571 -27.96456 -27.73487 -24.91059 -23.92568 -22.61710 -21.99907 -21.48699 -20.40526 -19.21001 -17.66704 -17.05441 -16.71577 -16.22105 -15.99918 -15.33934 -14.42495 -14.39185 -14.28763 -13.77669 -13.66694 -13.58613 -13.41440 -13.33172 -13.22672 -12.93274 -12.70142 -12.53139 -12.27127 -11.95472 -11.60752 -11.44371 -10.81587 -10.71618 -10.56091 -10.50563 -10.40432 -10.35025 -9.93577 -9.81713 -9.29107 -9.13496 -8.78558 -8.36453 -6.90931 -6.02042 -3.00601 0.93147 1.64329 1.78925 3.05349 3.35562 3.57641 3.61942 3.78996 4.01592 4.05973 4.34448 4.49623 4.54931 4.73870 4.77928 4.80125 4.92009 5.07203 5.13685 5.22502 5.42628 5.46116 5.49767 5.61609 5.70478 5.73843 5.83899 5.93926 5.97564 6.04950 6.13854 6.17738 6.19393 6.43585 6.55092 6.83736 6.96819 7.65179 7.78932 7.90221 8.29868 8.84349 9.31905 10.17961 10.33362 11.46908 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.003774 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.445684 B = 7417.595802 C = 8378.469548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.123 3.877 3 C -0.096 4.096 4 C 0.614 3.386 5 O -0.528 6.528 6 N -0.597 5.597 7 C 0.106 3.894 8 C -0.135 4.135 9 C -0.123 4.123 10 C 0.131 3.869 11 H 0.078 0.922 12 C 0.152 3.848 13 N -0.739 5.739 14 C -0.325 4.325 15 H 0.063 0.937 16 C -0.047 4.047 17 N -0.946 5.946 18 Si 1.081 2.919 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.296 1.296 22 N -0.200 5.200 23 N -0.075 5.075 24 N -0.367 5.367 25 C 0.088 3.912 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.016 0.984 36 H 0.037 0.963 37 H 0.366 0.634 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 -23.785 -6.405 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 C -0.236 4.236 4 C 0.401 3.599 5 O -0.404 6.404 6 N -0.329 5.329 7 C -0.017 4.017 8 C -0.174 4.174 9 C -0.161 4.161 10 C 0.028 3.972 11 H 0.096 0.904 12 C 0.024 3.976 13 N -0.385 5.385 14 C -0.456 4.456 15 H 0.081 0.919 16 C -0.244 4.244 17 N -0.592 5.592 18 Si 0.912 3.088 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.223 1.223 22 N -0.073 5.073 23 N -0.054 5.054 24 N -0.153 5.153 25 C -0.053 4.053 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.200 0.800 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.242 -22.948 -5.553 24.186 hybrid contribution -0.094 -1.348 -0.809 1.575 sum 5.147 -24.297 -6.363 25.638 Atomic orbital electron populations 1.20743 0.84526 1.05563 1.04682 1.21921 0.96288 0.86252 0.97017 1.21201 0.88905 0.95354 1.18111 1.16302 0.84830 0.81763 0.77042 1.90810 1.15359 1.83077 1.51108 1.48206 1.07218 1.06242 1.71266 1.22425 0.79492 0.98205 1.01583 1.22834 0.99736 0.94424 1.00359 1.22688 0.93468 0.97813 1.02100 1.21856 0.97087 0.78380 0.99862 0.90428 1.20876 0.96809 0.87535 0.92361 1.42205 1.66590 1.03593 1.26111 1.20025 1.29833 0.95509 1.00263 0.91879 1.25755 1.02316 0.92149 1.04160 1.70876 1.41062 1.36407 1.10877 0.83233 0.75437 0.76071 0.74091 1.21055 1.22297 1.22345 1.74661 1.19093 1.03789 1.09762 1.81969 0.96029 1.03714 1.23708 1.50247 1.06508 1.07700 1.50842 1.22150 1.02440 0.76112 1.04612 0.88970 0.90720 0.86683 0.89484 0.91273 0.90907 0.89909 0.89964 0.89904 0.96596 0.94501 0.80037 0.93484 0.89317 0.88124 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.57 36.00 0.34 -0.51 16 2 C 0.12 1.43 7.02 -81.88 -0.57 0.85 16 3 C -0.10 -1.42 6.83 -83.55 -0.57 -1.99 16 4 C 0.61 10.66 7.58 -12.48 -0.09 10.56 16 5 O -0.53 -10.37 13.91 5.28 0.07 -10.29 16 6 N -0.60 -9.98 3.07 -164.23 -0.50 -10.48 16 7 C 0.11 1.45 5.95 -2.53 -0.02 1.43 16 8 C -0.14 -1.66 7.08 -24.58 -0.17 -1.83 16 9 C -0.12 -1.91 6.01 -24.90 -0.15 -2.06 16 10 C 0.13 2.42 2.94 -66.95 -0.20 2.22 16 11 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 12 C 0.15 3.48 5.64 -4.05 -0.02 3.46 16 13 N -0.74 -19.76 5.44 -59.91 -0.33 -20.08 16 14 C -0.33 -9.69 9.99 -15.06 -0.15 -9.85 16 15 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16 16 C -0.05 -1.41 5.50 -17.43 -0.10 -1.50 16 17 N -0.95 -30.02 13.70 55.49 0.76 -29.26 16 18 Si 1.08 26.86 29.92 -169.99 -5.09 21.78 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 22 N -0.20 -2.89 9.54 32.85 0.31 -2.58 16 23 N -0.07 -0.97 13.78 60.35 0.83 -0.14 16 24 N -0.37 -3.65 4.03 -63.58 -0.26 -3.91 16 25 C 0.09 0.37 11.33 59.85 0.68 1.05 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.41 7.18 -51.93 -0.37 0.03 16 28 H 0.11 1.33 6.43 -51.93 -0.33 1.00 16 29 H 0.09 1.14 6.47 -51.93 -0.34 0.81 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 35 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 36 H 0.04 0.93 6.93 -51.93 -0.36 0.57 16 37 H 0.37 9.76 6.23 -40.82 -0.25 9.51 16 38 H 0.25 7.90 6.77 -40.82 -0.28 7.63 16 39 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.20 7.16 -51.93 -0.37 -0.18 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -37.14 336.13 -5.87 -43.01 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.72 Total: 5.05 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.02 Total: 1.84 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: 0.82 Total: -66.45 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -5.09 Total: 21.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.14 -5.87 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.000 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds