Wall clock time and date at job start Tue Mar 31 2020 03:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.58108 * 2 1 4 4 C 1.47523 * 125.76754 * 359.97438 * 3 2 1 5 5 O 1.21596 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99946 * 180.02562 * 4 3 2 7 7 C 1.47428 * 125.65119 * 5.19695 * 6 4 3 8 8 C 1.54910 * 104.83469 * 155.89232 * 7 6 4 9 9 C 1.55157 * 101.58204 * 37.01024 * 8 7 6 10 10 C 1.47032 * 125.65028 * 185.22099 * 6 4 3 11 11 H 1.08997 * 110.01082 * 300.52918 * 10 6 4 12 12 C 1.52999 * 109.87942 * 61.62185 * 10 6 4 13 13 N 1.46493 * 109.47230 * 183.44683 * 12 10 6 14 14 C 1.36934 * 120.00621 * 175.01842 * 13 12 10 15 15 H 1.08008 * 119.99394 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00581 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99836 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46963 * 179.97438 * 18 16 14 20 20 H 1.48503 * 109.47074 * 300.00131 * 18 16 14 21 21 H 1.48504 * 109.47107 * 60.00184 * 18 16 14 22 22 N 1.34395 * 108.46304 * 180.26112 * 3 2 1 23 23 N 1.28763 * 109.52115 * 359.58547 * 22 3 2 24 24 N 1.34812 * 126.58547 * 180.02562 * 2 1 3 25 25 C 1.46506 * 126.59007 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.46640 * 90.00690 * 1 2 3 27 27 H 1.08999 * 109.46681 * 210.00293 * 1 2 3 28 28 H 1.08997 * 109.47013 * 330.00079 * 1 2 3 29 29 H 1.08999 * 110.36440 * 37.05690 * 7 6 4 30 30 H 1.08996 * 110.46241 * 274.77921 * 7 6 4 31 31 H 1.09000 * 111.00265 * 278.94213 * 8 7 6 32 32 H 1.09001 * 111.00393 * 155.08658 * 8 7 6 33 33 H 1.08997 * 110.72336 * 206.13353 * 9 8 7 34 34 H 1.09005 * 110.71921 * 82.85758 * 9 8 7 35 35 H 1.09005 * 109.47566 * 63.44163 * 12 10 6 36 36 H 1.09003 * 109.47078 * 303.44571 * 12 10 6 37 37 H 0.97003 * 119.99604 * 355.01019 * 13 12 10 38 38 H 0.96993 * 119.99961 * 359.97438 * 17 16 14 39 39 H 1.09004 * 109.46887 * 90.00140 * 25 24 2 40 40 H 1.09003 * 109.47164 * 210.00050 * 25 24 2 41 41 H 1.08998 * 109.47043 * 329.99826 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6859 2.7627 -0.0006 6 7 2.7816 3.4987 -0.0010 7 6 4.2422 3.3300 -0.1095 8 6 4.7560 4.6771 -0.6763 9 6 3.8222 5.6911 0.0359 10 6 2.4796 4.9336 0.1072 11 1 1.8356 5.2423 -0.7163 12 6 1.7902 5.2210 1.4425 13 7 1.4197 6.6368 1.5061 14 6 0.6963 7.1083 2.5689 15 1 0.3986 6.4361 3.3601 16 6 0.3457 8.4500 2.6293 17 7 0.7080 9.2690 1.6648 18 14 -0.6417 9.0930 4.0789 19 1 -0.8840 10.5479 3.9064 20 1 -1.9420 8.3789 4.1479 21 1 0.1164 8.8634 5.3350 22 7 3.5983 0.6790 -0.0058 23 7 3.6299 -0.6083 -0.0006 24 7 2.3105 -1.0825 -0.0005 25 6 1.8864 -2.4848 -0.0016 26 1 -0.3632 -0.0001 -1.0277 27 1 -0.3632 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.4801 2.5154 -0.7934 30 1 4.6778 3.1404 0.8714 31 1 4.6272 4.7204 -1.7578 32 1 5.7973 4.8449 -0.4012 33 1 3.7203 6.6019 -0.5542 34 1 4.1907 5.9178 1.0365 35 1 2.4711 4.9864 2.2608 36 1 0.8939 4.6066 1.5283 37 1 1.6868 7.2404 0.7953 38 1 1.2204 8.9351 0.9120 39 1 1.7817 -2.8319 -1.0296 40 1 2.6330 -3.0906 0.5121 41 1 0.9292 -2.5754 0.5118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753600453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:24 Heat of formation + Delta-G solvation = 54.584798 kcal Electronic energy + Delta-G solvation = -23798.223982 eV Core-core repulsion = 20328.875925 eV Total energy + Delta-G solvation = -3469.348057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.37620 -41.10797 -38.71715 -36.78480 -35.94907 -33.69668 -33.21100 -32.63569 -30.29866 -28.98529 -28.38431 -26.56465 -25.49463 -24.40019 -23.21920 -22.45121 -21.53767 -20.53749 -19.44745 -18.56238 -17.83327 -17.36580 -17.12538 -16.70309 -16.01154 -15.73166 -15.52300 -15.31148 -15.13005 -14.99052 -14.43629 -14.21560 -14.18748 -14.00936 -13.85254 -13.71859 -13.27518 -13.17103 -12.99210 -12.72950 -12.59755 -12.39695 -11.95904 -11.89699 -11.86314 -11.71929 -11.33753 -11.23233 -11.12385 -10.95322 -10.31365 -9.73571 -9.16931 -8.43768 -5.37755 0.04176 0.52508 1.06646 1.57106 1.67965 1.79400 1.85356 2.11102 2.70113 3.04237 3.29860 3.36280 3.55974 3.56740 3.58214 3.73224 3.83724 3.93773 4.19033 4.23918 4.27588 4.33407 4.42178 4.52515 4.59217 4.63697 4.70820 4.77372 4.83789 4.87586 4.91975 5.03315 5.05118 5.06557 5.27356 5.33916 5.46791 5.53343 6.37625 6.47063 6.75487 7.00270 7.05993 7.93487 8.06282 9.08460 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.003774 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.445684 B = 7417.595802 C = 8378.469548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.128 4.128 4 C 0.607 3.393 5 O -0.562 6.562 6 N -0.600 5.600 7 C 0.106 3.894 8 C -0.118 4.118 9 C -0.119 4.119 10 C 0.139 3.861 11 H 0.060 0.940 12 C 0.161 3.839 13 N -0.746 5.746 14 C -0.341 4.341 15 H 0.058 0.942 16 C -0.098 4.098 17 N -0.969 5.969 18 Si 1.130 2.870 19 H -0.287 1.287 20 H -0.280 1.280 21 H -0.276 1.276 22 N -0.215 5.215 23 N -0.089 5.089 24 N -0.351 5.351 25 C 0.072 3.928 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.012 0.988 36 H 0.009 0.991 37 H 0.365 0.635 38 H 0.245 0.755 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -25.908 -6.368 27.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.268 4.268 4 C 0.396 3.604 5 O -0.441 6.441 6 N -0.333 5.333 7 C -0.015 4.015 8 C -0.156 4.156 9 C -0.157 4.157 10 C 0.035 3.965 11 H 0.079 0.921 12 C 0.033 3.967 13 N -0.392 5.392 14 C -0.472 4.472 15 H 0.076 0.924 16 C -0.289 4.289 17 N -0.617 5.617 18 Si 0.954 3.046 19 H -0.212 1.212 20 H -0.206 1.206 21 H -0.202 1.202 22 N -0.088 5.088 23 N -0.069 5.069 24 N -0.137 5.137 25 C -0.066 4.066 26 H 0.124 0.876 27 H 0.134 0.866 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.198 0.802 38 H 0.056 0.944 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.608 -25.151 -5.531 26.355 hybrid contribution -0.229 -0.864 -0.833 1.221 sum 5.379 -26.014 -6.363 27.316 Atomic orbital electron populations 1.20808 0.82591 1.06046 1.05692 1.22235 0.97314 0.85876 0.95284 1.21003 0.90008 0.94643 1.21135 1.16770 0.84502 0.82987 0.76190 1.90779 1.16747 1.83903 1.52673 1.48327 1.08638 1.05241 1.71048 1.22576 0.77537 0.99430 1.01999 1.22842 1.00347 0.91738 1.00682 1.22618 0.92469 0.98493 1.02085 1.21606 0.98167 0.80352 0.96386 0.92141 1.20821 0.95795 0.85101 0.94942 1.42303 1.66372 1.05057 1.25452 1.20341 1.30060 0.95896 1.00924 0.92356 1.27289 1.02980 0.92592 1.06071 1.70982 1.42228 1.36946 1.11498 0.82618 0.74878 0.75373 0.71745 1.21241 1.20622 1.20216 1.74605 1.19149 1.04572 1.10436 1.81857 0.97830 1.03156 1.24019 1.50581 1.05146 1.09260 1.48703 1.22746 1.04174 0.72959 1.06752 0.87554 0.86595 0.89721 0.88578 0.91267 0.89535 0.86940 0.89639 0.91074 0.97059 0.97246 0.80220 0.94435 0.87079 0.86846 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.57 71.23 0.68 -0.81 16 2 C 0.13 2.91 7.02 41.72 0.29 3.20 16 3 C -0.13 -3.79 6.83 40.82 0.28 -3.52 16 4 C 0.61 21.83 7.58 86.69 0.66 22.48 16 5 O -0.56 -23.28 13.91 -4.02 -0.06 -23.34 16 6 N -0.60 -20.59 3.07 -791.76 -2.43 -23.02 16 7 C 0.11 2.84 5.95 86.85 0.52 3.36 16 8 C -0.12 -2.69 7.08 31.99 0.23 -2.46 16 9 C -0.12 -3.68 6.01 31.78 0.19 -3.49 16 10 C 0.14 5.31 2.94 45.34 0.13 5.45 16 11 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 12 C 0.16 7.70 5.64 86.38 0.49 8.19 16 13 N -0.75 -41.32 5.44 -343.46 -1.87 -43.19 16 14 C -0.34 -20.77 9.99 84.03 0.84 -19.93 16 15 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 16 C -0.10 -5.94 5.50 84.86 0.47 -5.48 16 17 N -0.97 -62.29 13.70 21.65 0.30 -62.00 16 18 Si 1.13 54.01 29.92 68.60 2.05 56.07 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 N -0.21 -6.11 9.54 -50.00 -0.48 -6.59 16 23 N -0.09 -2.19 13.78 37.02 0.51 -1.68 16 24 N -0.35 -6.18 4.03 -355.08 -1.43 -7.61 16 25 C 0.07 0.34 11.33 127.77 1.45 1.79 16 26 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.12 0.85 7.18 -2.39 -0.02 0.83 16 28 H 0.08 1.98 6.43 -2.39 -0.02 1.97 16 29 H 0.10 2.44 6.47 -2.39 -0.02 2.42 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.07 2.38 7.79 -2.38 -0.02 2.36 16 35 H 0.01 0.56 8.06 -2.38 -0.02 0.54 16 36 H 0.01 0.50 6.93 -2.39 -0.02 0.49 16 37 H 0.37 20.19 6.23 -92.71 -0.58 19.61 16 38 H 0.25 15.65 6.77 -92.71 -0.63 15.02 16 39 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.13 -0.08 7.16 -2.39 -0.02 -0.09 16 Total: -1.00 -83.36 336.13 3.44 -79.92 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.62 Total: 22.65 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 6.22 Total: 8.78 kcal Atomic # 7 Polarization: -138.69 SS G_CDS: -5.40 Total: -144.08 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.06 Total: -23.34 kcal Atomic # 14 Polarization: 54.01 SS G_CDS: 2.05 Total: 56.07 kcal Total: -83.36 3.44 -79.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.506 kcal (2) G-P(sol) polarization free energy of solvation -83.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds