Wall clock time and date at job start Tue Mar 31 2020 02:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47076 * 2 1 4 4 C 1.46499 * 120.00255 * 274.92398 * 3 2 1 5 5 C 1.52998 * 109.46971 * 270.00349 * 4 3 2 6 6 N 1.46499 * 109.47360 * 179.97438 * 5 4 3 7 7 C 1.36933 * 120.00506 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.38810 * 120.00141 * 179.97438 * 7 6 5 10 10 N 1.31621 * 120.00005 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99846 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47253 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46980 * 120.00197 * 11 9 7 14 14 H 1.48503 * 109.47068 * 239.99757 * 11 9 7 15 15 C 1.34777 * 119.99550 * 94.92312 * 3 2 1 16 16 O 1.21650 * 119.99689 * 185.25085 * 15 3 2 17 17 C 1.47087 * 120.00330 * 5.25143 * 15 3 2 18 18 C 1.39337 * 120.58386 * 75.30625 * 17 15 3 19 19 C 1.39467 * 118.95627 * 179.72798 * 18 17 15 20 20 C 1.35753 * 120.13227 * 0.02562 * 19 18 17 21 21 N 1.35431 * 121.23086 * 359.97438 * 20 19 18 22 22 C 1.46506 * 119.47435 * 180.02562 * 21 20 19 23 23 C 1.34654 * 121.06054 * 359.97438 * 21 20 19 24 24 O 1.21875 * 120.10546 * 180.02562 * 23 21 20 25 25 H 1.08998 * 109.47691 * 59.99535 * 1 2 3 26 26 H 1.08995 * 109.46869 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46763 * 299.99264 * 1 2 3 28 28 H 1.09000 * 109.46763 * 240.00736 * 2 1 3 29 29 H 1.08998 * 109.47691 * 120.00464 * 2 1 3 30 30 H 1.09005 * 109.47017 * 29.99652 * 4 3 2 31 31 H 1.08993 * 109.47571 * 150.00075 * 4 3 2 32 32 H 1.09009 * 109.47145 * 299.99644 * 5 4 3 33 33 H 1.08998 * 109.47647 * 59.99387 * 5 4 3 34 34 H 0.97003 * 119.99657 * 359.97438 * 6 5 4 35 35 H 0.97001 * 119.99731 * 180.02562 * 10 9 7 36 36 H 1.08000 * 120.51918 * 359.74651 * 18 17 15 37 37 H 1.08003 * 119.93400 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.38212 * 180.02562 * 20 19 18 39 39 H 1.09008 * 109.46568 * 0.02562 * 22 21 20 40 40 H 1.08999 * 109.47270 * 119.99894 * 22 21 20 41 41 H 1.08999 * 109.47074 * 240.00224 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1598 2.1082 -1.2640 5 6 3.5641 1.8822 -1.8279 6 7 3.7055 2.6086 -3.0922 7 6 4.8856 2.5548 -3.7845 8 1 5.7121 1.9765 -3.3988 9 6 5.0193 3.2427 -4.9828 10 7 4.0119 3.9471 -5.4532 11 14 6.6291 3.1687 -5.9276 12 1 7.5963 2.3154 -5.1916 13 1 6.3864 2.5924 -7.2746 14 1 7.1840 4.5389 -6.0681 15 6 2.3374 1.9831 1.1629 16 8 2.6512 3.1584 1.1735 17 6 2.3061 1.2190 2.4194 18 6 3.3159 0.3071 2.7198 19 6 3.2554 -0.3950 3.9234 20 6 2.2251 -0.1873 4.7825 21 7 1.2403 0.6975 4.4970 22 6 0.1466 0.8918 5.4523 23 6 1.2506 1.4022 3.3497 24 8 0.3556 2.1942 3.1106 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.4194 1.7452 -1.9768 31 1 2.0052 3.1730 -1.0901 32 1 4.3046 2.2452 -1.1151 33 1 3.7188 0.8173 -2.0018 34 1 2.9630 3.1277 -3.4389 35 1 4.1053 4.4275 -6.2907 36 1 4.1326 0.1467 2.0316 37 1 4.0295 -1.1060 4.1720 38 1 2.1905 -0.7372 5.7114 39 1 0.3006 0.2462 6.3170 40 1 0.1271 1.9327 5.7754 41 1 -0.8010 0.6415 4.9756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754076408.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:35 Heat of formation + Delta-G solvation = -43.152049 kcal Electronic energy + Delta-G solvation = -23601.094184 eV Core-core repulsion = 20095.215188 eV Total energy + Delta-G solvation = -3505.878996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.51504 -40.73515 -38.11863 -37.54635 -36.43005 -35.51432 -33.59326 -31.63535 -31.31456 -29.25099 -28.61254 -26.33969 -25.26017 -24.25823 -23.72628 -23.22924 -20.75866 -19.26618 -18.67880 -18.48762 -17.99653 -17.65420 -17.00581 -16.81319 -16.51353 -16.01236 -15.53384 -15.37673 -15.25117 -15.00841 -14.80681 -14.53213 -14.21319 -13.87037 -13.64531 -13.43041 -13.12825 -13.07477 -12.96504 -12.85562 -12.83989 -12.71603 -12.39834 -12.11269 -12.08880 -11.87241 -11.38762 -11.09698 -10.99985 -10.86394 -9.81606 -9.08744 -9.00691 -7.98192 -5.29955 -0.38985 0.84427 1.28127 1.45715 1.48616 1.58606 1.72901 1.98188 2.52102 2.56761 3.34939 3.46852 3.66124 3.85980 3.94155 4.00096 4.07013 4.12606 4.16134 4.17633 4.34130 4.39772 4.43107 4.49138 4.50788 4.77267 4.78425 4.81064 4.88072 4.98980 4.99892 5.07100 5.23663 5.25271 5.42413 5.51700 5.57293 5.96429 6.22479 6.33055 6.88755 7.07728 7.28282 7.99113 8.25073 9.25740 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.003238 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.586796 B = 8645.946154 C = 8891.913836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 N -0.597 5.597 4 C 0.120 3.880 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.249 4.249 8 H 0.078 0.922 9 C -0.077 4.077 10 N -0.970 5.970 11 Si 0.982 3.018 12 H -0.263 1.263 13 H -0.287 1.287 14 H -0.294 1.294 15 C 0.578 3.422 16 O -0.590 6.590 17 C -0.306 4.306 18 C 0.044 3.956 19 C -0.234 4.234 20 C 0.174 3.826 21 N -0.490 5.490 22 C 0.056 3.944 23 C 0.518 3.482 24 O -0.597 6.597 25 H 0.048 0.952 26 H 0.097 0.903 27 H 0.033 0.967 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.002 0.998 33 H 0.040 0.960 34 H 0.374 0.626 35 H 0.253 0.747 36 H 0.149 0.851 37 H 0.198 0.802 38 H 0.232 0.768 39 H 0.148 0.852 40 H 0.067 0.933 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -20.200 27.695 34.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.020 4.020 3 N -0.328 5.328 4 C -0.003 4.003 5 C 0.026 3.974 6 N -0.388 5.388 7 C -0.381 4.381 8 H 0.095 0.905 9 C -0.269 4.269 10 N -0.621 5.621 11 Si 0.810 3.190 12 H -0.187 1.187 13 H -0.214 1.214 14 H -0.221 1.221 15 C 0.367 3.633 16 O -0.470 6.470 17 C -0.314 4.314 18 C 0.021 3.979 19 C -0.255 4.255 20 C 0.045 3.955 21 N -0.197 5.197 22 C -0.084 4.084 23 C 0.321 3.679 24 O -0.484 6.484 25 H 0.067 0.933 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.206 0.794 35 H 0.062 0.938 36 H 0.166 0.834 37 H 0.215 0.785 38 H 0.249 0.751 39 H 0.166 0.834 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.137 -19.153 27.569 34.126 hybrid contribution 0.296 1.179 -1.243 1.738 sum -5.841 -17.975 26.327 32.408 Atomic orbital electron populations 1.22117 0.95406 1.03392 1.01119 1.21868 0.94894 0.80286 1.04903 1.47947 1.64127 1.15818 1.04955 1.21337 0.97398 0.96771 0.84803 1.20914 0.94450 0.95384 0.86641 1.42436 1.14548 1.59192 1.22601 1.19662 0.92101 1.24592 1.01705 0.90454 1.25699 1.01579 1.00150 0.99465 1.69850 1.32707 1.37130 1.22392 0.84959 0.78811 0.77086 0.78172 1.18735 1.21396 1.22104 1.18279 0.75069 0.85731 0.84226 1.90768 1.50115 1.18583 1.87503 1.20487 1.03247 1.09485 0.98141 1.22207 0.92975 0.86054 0.96651 1.21125 1.02956 1.07208 0.94261 1.23302 0.84705 0.86747 1.00745 1.45513 1.23234 1.33152 1.17799 1.22503 0.88506 1.04812 0.92598 1.16779 0.86752 0.81993 0.82360 1.90915 1.40884 1.39068 1.77503 0.93256 0.88393 0.94731 0.88535 0.88199 0.88823 0.93082 0.98050 0.94257 0.79426 0.93813 0.83358 0.78484 0.75129 0.83365 0.91440 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.96 16 2 C 0.10 2.41 6.08 86.38 0.53 2.94 16 3 N -0.60 -20.66 2.47 -826.06 -2.04 -22.70 16 4 C 0.12 4.90 5.58 86.38 0.48 5.38 16 5 C 0.15 7.02 6.58 86.38 0.57 7.59 16 6 N -0.74 -41.62 5.60 -343.46 -1.92 -43.54 16 7 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 10 N -0.97 -62.23 13.06 21.65 0.28 -61.94 16 11 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 15 C 0.58 22.70 6.67 86.56 0.58 23.28 16 16 O -0.59 -30.00 16.66 -4.19 -0.07 -30.07 16 17 C -0.31 -8.76 4.21 -19.79 -0.08 -8.84 16 18 C 0.04 0.75 8.79 22.83 0.20 0.95 16 19 C -0.23 -1.42 9.99 21.99 0.22 -1.20 16 20 C 0.17 0.67 10.28 83.56 0.86 1.53 16 21 N -0.49 -6.96 2.98 -673.18 -2.00 -8.96 16 22 C 0.06 0.44 10.04 127.77 1.28 1.73 16 23 C 0.52 14.70 7.44 85.16 0.63 15.33 16 24 O -0.60 -23.39 16.54 -4.91 -0.08 -23.47 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 29 H 0.10 1.87 5.77 -2.39 -0.01 1.85 16 30 H 0.09 3.45 8.07 -2.38 -0.02 3.43 16 31 H 0.05 2.43 7.35 -2.39 -0.02 2.41 16 32 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.37 22.10 7.67 -92.71 -0.71 21.39 16 35 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.20 -0.45 8.06 -2.91 -0.02 -0.48 16 38 H 0.23 -2.07 7.79 -2.91 -0.02 -2.09 16 39 H 0.15 -0.57 7.70 -2.38 -0.02 -0.59 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -98.76 351.29 3.82 -94.94 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.32 Total: 18.35 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 7.31 Total: 27.60 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -5.69 Total: -137.15 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.15 Total: -53.54 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -98.76 3.82 -94.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754076408.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.784 kcal (2) G-P(sol) polarization free energy of solvation -98.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds