Wall clock time and date at job start Tue Mar 31 2020 02:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46708 * 2 1 4 4 C 1.52994 * 109.47632 * 239.99867 * 2 1 3 5 5 N 1.46501 * 109.47285 * 184.99698 * 4 2 1 6 6 C 1.46499 * 120.00279 * 269.99948 * 5 4 2 7 7 C 1.36938 * 119.99816 * 90.00182 * 5 4 2 8 8 H 1.07997 * 120.00028 * 24.79191 * 7 5 4 9 9 C 1.38811 * 119.99856 * 204.79286 * 7 5 4 10 10 N 1.31623 * 119.99954 * 10.84153 * 9 7 5 11 11 Si 1.86801 * 119.99950 * 190.83837 * 9 7 5 12 12 H 1.48498 * 109.47188 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47085 * 120.00513 * 11 9 7 14 14 H 1.48501 * 109.47072 * 240.00283 * 11 9 7 15 15 N 1.46499 * 109.46976 * 119.99649 * 2 1 3 16 16 C 1.34776 * 119.99976 * 275.00158 * 15 2 1 17 17 O 1.21644 * 120.00244 * 4.61541 * 16 15 2 18 18 C 1.47087 * 119.99977 * 184.60876 * 16 15 2 19 19 C 1.39335 * 120.58657 * 174.41866 * 18 16 15 20 20 C 1.39469 * 118.95828 * 179.97438 * 19 18 16 21 21 C 1.35755 * 120.13219 * 0.02562 * 20 19 18 22 22 N 1.35433 * 121.22988 * 359.69456 * 21 20 19 23 23 C 1.46505 * 119.47446 * 180.30629 * 22 21 20 24 24 C 1.34657 * 121.05577 * 0.57345 * 22 21 20 25 25 O 1.21883 * 120.10074 * 179.73872 * 24 22 21 26 26 H 1.08993 * 109.47671 * 300.00260 * 1 2 3 27 27 H 1.08998 * 109.46925 * 60.00729 * 1 2 3 28 28 H 1.08999 * 109.46370 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47133 * 304.99997 * 4 2 1 30 30 H 1.09004 * 109.46805 * 65.00106 * 4 2 1 31 31 H 1.09008 * 109.46822 * 86.93922 * 6 5 4 32 32 H 1.08996 * 109.47868 * 206.94326 * 6 5 4 33 33 H 1.08999 * 109.46980 * 326.94545 * 6 5 4 34 34 H 0.97002 * 119.99565 * 179.97438 * 10 9 7 35 35 H 0.96993 * 120.00110 * 95.00513 * 15 2 1 36 36 H 1.08006 * 120.52228 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.93409 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.38540 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47317 * 270.26118 * 23 22 21 40 40 H 1.09000 * 109.46708 * 30.25827 * 23 22 21 41 41 H 1.08996 * 109.47191 * 150.25776 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5002 -0.8262 -1.1904 6 6 4.3344 0.2342 -1.7611 7 6 4.0851 -1.9157 -0.6021 8 1 3.5486 -2.8511 -0.5440 9 6 5.3677 -1.8177 -0.0804 10 7 5.9393 -0.6385 0.0439 11 14 6.2826 -3.3592 0.4453 12 1 5.4273 -4.5489 0.2039 13 1 7.5360 -3.4833 -0.3412 14 1 6.6118 -3.2707 1.8906 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.7792 1.1388 2.4339 18 6 2.7320 -0.6833 3.5313 19 6 2.9776 0.0314 4.7020 20 6 3.5328 -0.6334 5.7951 21 6 3.8267 -1.9561 5.7109 22 7 3.5855 -2.6583 4.5783 23 6 3.9115 -4.0858 4.5319 24 6 3.0558 -2.0641 3.4921 25 8 2.8504 -2.7118 2.4802 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6056 -1.7198 -1.2951 30 1 1.7518 -0.1583 -2.1369 31 1 4.4949 1.0118 -1.0142 32 1 5.2950 -0.1824 -2.0641 33 1 3.8340 0.6624 -2.6296 34 1 6.8354 -0.5701 0.4089 35 1 2.2491 -1.6316 1.1527 36 1 2.7410 1.0835 4.7622 37 1 3.7293 -0.0948 6.7104 38 1 4.2567 -2.4588 6.5646 39 1 4.9366 -4.2134 4.1839 40 1 3.8106 -4.5140 5.5292 41 1 3.2301 -4.5922 3.8484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754331494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:52 Heat of formation + Delta-G solvation = -2.270950 kcal Electronic energy + Delta-G solvation = -25186.760189 eV Core-core repulsion = 21682.653931 eV Total energy + Delta-G solvation = -3504.106258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21482 -38.65271 -36.85797 -36.09479 -34.25175 -33.66639 -31.11066 -30.21152 -29.34951 -27.62769 -26.02050 -25.42790 -24.60060 -22.49417 -21.69705 -20.49464 -19.53224 -17.64917 -17.23645 -16.72641 -16.41381 -15.96599 -15.32037 -15.08535 -14.70687 -14.29072 -14.00664 -13.56880 -13.48004 -13.11344 -12.84855 -12.71510 -12.66170 -12.31500 -12.21004 -11.95306 -11.71232 -11.60402 -11.24110 -11.11077 -10.77643 -10.58538 -10.28021 -10.10129 -9.87717 -9.85045 -9.74003 -9.56752 -9.11077 -8.39843 -8.00524 -7.71838 -6.58367 -5.60569 -3.03796 0.67664 2.02053 2.65482 3.33545 3.39032 3.45364 3.51117 4.12198 4.38053 4.51406 4.60736 4.62883 5.07923 5.12082 5.26563 5.31641 5.49931 5.52213 5.61228 5.69837 5.85798 5.97788 6.05224 6.11148 6.18072 6.34513 6.37575 6.47205 6.56251 6.64525 6.72786 6.89796 7.07151 7.08957 7.49366 7.64444 7.83537 7.95023 8.17011 8.54364 8.78441 9.35175 9.37612 10.00006 10.50293 11.46269 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.008772 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.673353 B = 3191.311448 C = 4573.590173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.073 0.927 4 C 0.141 3.859 5 N -0.597 5.597 6 C 0.164 3.836 7 C -0.236 4.236 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.905 5.905 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.294 1.294 14 H -0.297 1.297 15 N -0.671 5.671 16 C 0.574 3.426 17 O -0.577 6.577 18 C -0.246 4.246 19 C 0.039 3.961 20 C -0.240 4.240 21 C 0.147 3.853 22 N -0.497 5.497 23 C 0.056 3.944 24 C 0.526 3.474 25 O -0.515 6.515 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.017 0.983 32 H 0.055 0.945 33 H -0.007 1.007 34 H 0.247 0.753 35 H 0.420 0.580 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.162 0.838 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 -3.888 12.291 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.091 0.909 4 C 0.013 3.987 5 N -0.319 5.319 6 C 0.020 3.980 7 C -0.365 4.365 8 H 0.085 0.915 9 C -0.190 4.190 10 N -0.551 5.551 11 Si 0.728 3.272 12 H -0.201 1.201 13 H -0.221 1.221 14 H -0.225 1.225 15 N -0.328 5.328 16 C 0.360 3.640 17 O -0.460 6.460 18 C -0.253 4.253 19 C 0.016 3.984 20 C -0.263 4.263 21 C 0.017 3.983 22 N -0.206 5.206 23 C -0.085 4.085 24 C 0.327 3.673 25 O -0.394 6.394 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.011 0.989 34 H 0.057 0.943 35 H 0.268 0.732 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.180 0.820 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.544 -3.637 11.609 13.369 hybrid contribution 1.028 -1.064 0.672 1.625 sum -4.516 -4.702 12.281 13.904 Atomic orbital electron populations 1.22149 0.97134 1.01108 1.01352 1.21780 0.91780 0.98173 0.87500 0.90929 1.21194 0.86128 0.97845 0.93522 1.43923 0.98916 1.22632 1.66444 1.20759 0.94009 0.90670 0.92606 1.19128 0.98184 0.88766 1.30469 0.91544 1.24931 0.99156 0.95773 0.99125 1.70089 1.14608 1.21015 1.49362 0.86271 0.79624 0.83813 0.77515 1.20148 1.22143 1.22472 1.46270 1.62879 1.16240 1.07438 1.17306 0.78288 0.85493 0.82894 1.90678 1.53041 1.17330 1.84964 1.21201 1.12747 0.93469 0.97925 1.21922 0.86204 1.00486 0.89786 1.20585 1.10759 0.93685 1.01320 1.22057 0.93580 0.93383 0.89231 1.45334 1.51225 1.11652 1.12402 1.22212 1.03606 0.78673 1.04028 1.17104 0.79256 0.88395 0.82579 1.90703 1.54955 1.65022 1.28720 0.92905 0.92471 0.93172 0.93449 0.93096 0.96473 0.92674 0.98878 0.94261 0.73217 0.83698 0.83342 0.82031 0.90484 0.89745 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.48 37.16 0.35 -2.47 16 2 C 0.12 2.53 2.84 -67.93 -0.19 2.34 16 3 H 0.07 1.76 7.65 -51.93 -0.40 1.36 16 4 C 0.14 3.10 5.37 -4.04 -0.02 3.08 16 5 N -0.60 -15.61 2.81 -181.12 -0.51 -16.11 16 6 C 0.16 4.28 9.03 59.85 0.54 4.82 16 7 C -0.24 -6.62 7.99 -15.06 -0.12 -6.74 16 8 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 9 C 0.01 0.23 5.09 -17.43 -0.09 0.14 16 10 N -0.91 -27.25 10.75 55.49 0.60 -26.65 16 11 Si 0.90 22.77 29.57 -169.99 -5.03 17.74 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 14 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 15 N -0.67 -15.76 4.40 -54.99 -0.24 -16.00 16 16 C 0.57 13.40 7.70 -12.67 -0.10 13.31 16 17 O -0.58 -14.25 16.09 5.24 0.08 -14.17 16 18 C -0.25 -4.92 5.92 -104.51 -0.62 -5.54 16 19 C 0.04 0.61 9.69 -38.72 -0.38 0.24 16 20 C -0.24 -2.67 9.99 -40.01 -0.40 -3.07 16 21 C 0.15 1.53 10.25 -16.85 -0.17 1.36 16 22 N -0.50 -7.08 2.98 -126.77 -0.38 -7.46 16 23 C 0.06 0.63 10.34 59.85 0.62 1.25 16 24 C 0.53 10.20 7.44 -14.92 -0.11 10.08 16 25 O -0.51 -11.50 13.26 5.02 0.07 -11.44 16 26 H 0.05 0.98 8.12 -51.93 -0.42 0.55 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 30 H 0.05 1.00 7.92 -51.93 -0.41 0.59 16 31 H 0.02 0.48 7.77 -51.92 -0.40 0.08 16 32 H 0.05 1.53 6.85 -51.93 -0.36 1.17 16 33 H -0.01 -0.17 7.93 -51.93 -0.41 -0.58 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.42 10.30 4.00 -40.83 -0.16 10.14 16 36 H 0.15 2.15 7.71 -52.48 -0.40 1.75 16 37 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.16 0.86 8.02 -52.49 -0.42 0.44 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.55 8.00 -51.93 -0.42 0.13 16 41 H 0.10 1.21 7.38 -51.93 -0.38 0.83 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -36.51 340.32 -6.81 -43.31 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.84 Total: 6.85 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: -0.69 Total: 18.79 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.53 Total: -66.22 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.15 Total: -25.60 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.51 -6.81 -43.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754331494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.043 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds