Wall clock time and date at job start Tue Mar 31 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46708 * 2 1 4 4 C 1.52994 * 109.47632 * 239.99867 * 2 1 3 5 5 N 1.46501 * 109.47285 * 184.99698 * 4 2 1 6 6 C 1.46499 * 120.00279 * 269.99948 * 5 4 2 7 7 C 1.36938 * 119.99816 * 90.00182 * 5 4 2 8 8 H 1.07997 * 120.00028 * 24.79191 * 7 5 4 9 9 C 1.38811 * 119.99856 * 204.79286 * 7 5 4 10 10 N 1.31623 * 119.99954 * 10.84153 * 9 7 5 11 11 Si 1.86801 * 119.99950 * 190.83837 * 9 7 5 12 12 H 1.48498 * 109.47188 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47085 * 120.00513 * 11 9 7 14 14 H 1.48501 * 109.47072 * 240.00283 * 11 9 7 15 15 N 1.46499 * 109.46976 * 119.99649 * 2 1 3 16 16 C 1.34776 * 119.99976 * 275.00158 * 15 2 1 17 17 O 1.21644 * 120.00244 * 4.61541 * 16 15 2 18 18 C 1.47087 * 119.99977 * 184.60876 * 16 15 2 19 19 C 1.39335 * 120.58657 * 174.41866 * 18 16 15 20 20 C 1.39469 * 118.95828 * 179.97438 * 19 18 16 21 21 C 1.35755 * 120.13219 * 0.02562 * 20 19 18 22 22 N 1.35433 * 121.22988 * 359.69456 * 21 20 19 23 23 C 1.46505 * 119.47446 * 180.30629 * 22 21 20 24 24 C 1.34657 * 121.05577 * 0.57345 * 22 21 20 25 25 O 1.21883 * 120.10074 * 179.73872 * 24 22 21 26 26 H 1.08993 * 109.47671 * 300.00260 * 1 2 3 27 27 H 1.08998 * 109.46925 * 60.00729 * 1 2 3 28 28 H 1.08999 * 109.46370 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47133 * 304.99997 * 4 2 1 30 30 H 1.09004 * 109.46805 * 65.00106 * 4 2 1 31 31 H 1.09008 * 109.46822 * 86.93922 * 6 5 4 32 32 H 1.08996 * 109.47868 * 206.94326 * 6 5 4 33 33 H 1.08999 * 109.46980 * 326.94545 * 6 5 4 34 34 H 0.97002 * 119.99565 * 179.97438 * 10 9 7 35 35 H 0.96993 * 120.00110 * 95.00513 * 15 2 1 36 36 H 1.08006 * 120.52228 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.93409 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.38540 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.47317 * 270.26118 * 23 22 21 40 40 H 1.09000 * 109.46708 * 30.25827 * 23 22 21 41 41 H 1.08996 * 109.47191 * 150.25776 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 3.5002 -0.8262 -1.1904 6 6 4.3344 0.2342 -1.7611 7 6 4.0851 -1.9157 -0.6021 8 1 3.5486 -2.8511 -0.5440 9 6 5.3677 -1.8177 -0.0804 10 7 5.9393 -0.6385 0.0439 11 14 6.2826 -3.3592 0.4453 12 1 5.4273 -4.5489 0.2039 13 1 7.5360 -3.4833 -0.3412 14 1 6.6118 -3.2707 1.8906 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.7792 1.1388 2.4339 18 6 2.7320 -0.6833 3.5313 19 6 2.9776 0.0314 4.7020 20 6 3.5328 -0.6334 5.7951 21 6 3.8267 -1.9561 5.7109 22 7 3.5855 -2.6583 4.5783 23 6 3.9115 -4.0858 4.5319 24 6 3.0558 -2.0641 3.4921 25 8 2.8504 -2.7118 2.4802 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6056 -1.7198 -1.2951 30 1 1.7518 -0.1583 -2.1369 31 1 4.4949 1.0118 -1.0142 32 1 5.2950 -0.1824 -2.0641 33 1 3.8340 0.6624 -2.6296 34 1 6.8354 -0.5701 0.4089 35 1 2.2491 -1.6316 1.1527 36 1 2.7410 1.0835 4.7622 37 1 3.7293 -0.0948 6.7104 38 1 4.2567 -2.4588 6.5646 39 1 4.9366 -4.2134 4.1839 40 1 3.8106 -4.5140 5.5292 41 1 3.2301 -4.5922 3.8484 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754331494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:51 Heat of formation + Delta-G solvation = -28.680978 kcal Electronic energy + Delta-G solvation = -25187.905414 eV Core-core repulsion = 21682.653931 eV Total energy + Delta-G solvation = -3505.251483 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.43821 -40.30349 -38.22303 -37.92138 -35.66772 -35.34629 -33.10634 -31.80502 -30.71483 -28.61883 -28.04369 -27.39434 -25.87345 -23.72376 -23.51185 -22.15860 -21.27120 -19.14103 -18.53919 -18.44938 -17.82869 -17.15850 -16.87038 -16.81393 -16.44369 -15.78132 -15.47659 -15.37794 -15.12655 -14.91086 -14.48345 -14.18864 -13.93270 -13.61406 -13.42245 -13.33228 -13.16469 -13.09754 -12.89754 -12.78381 -12.68354 -12.56756 -12.19744 -11.99999 -11.95790 -11.71980 -11.10648 -11.01503 -10.77060 -10.58738 -9.70862 -8.98084 -8.72094 -7.79738 -5.24772 -0.47762 0.87226 1.33871 1.37591 1.49645 1.58764 1.89701 2.51118 2.65026 2.90852 3.37788 3.59469 3.71138 3.80100 4.00907 4.06484 4.17830 4.23146 4.35988 4.38337 4.44018 4.52881 4.71355 4.75880 4.83723 4.86610 4.92241 4.96055 4.99663 5.12459 5.28598 5.30651 5.37188 5.55800 5.63347 5.71041 5.92967 5.94901 6.37570 6.80803 7.08950 7.20106 7.61273 7.89269 8.34594 9.26225 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.008772 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.673353 B = 3191.311448 C = 4573.590173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.114 3.886 3 H 0.039 0.961 4 C 0.141 3.859 5 N -0.611 5.611 6 C 0.180 3.820 7 C -0.230 4.230 8 H 0.061 0.939 9 C -0.041 4.041 10 N -0.936 5.936 11 Si 0.952 3.048 12 H -0.269 1.269 13 H -0.294 1.294 14 H -0.294 1.294 15 N -0.682 5.682 16 C 0.560 3.440 17 O -0.612 6.612 18 C -0.321 4.321 19 C 0.060 3.940 20 C -0.244 4.244 21 C 0.178 3.822 22 N -0.496 5.496 23 C 0.050 3.950 24 C 0.513 3.487 25 O -0.564 6.564 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.080 0.920 31 H -0.017 1.017 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.241 0.759 35 H 0.415 0.585 36 H 0.143 0.857 37 H 0.199 0.801 38 H 0.233 0.767 39 H 0.069 0.931 40 H 0.146 0.854 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -5.533 15.123 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.006 3.994 3 H 0.057 0.943 4 C 0.014 3.986 5 N -0.333 5.333 6 C 0.035 3.965 7 C -0.360 4.360 8 H 0.078 0.922 9 C -0.236 4.236 10 N -0.584 5.584 11 Si 0.782 3.218 12 H -0.194 1.194 13 H -0.221 1.221 14 H -0.221 1.221 15 N -0.339 5.339 16 C 0.349 3.651 17 O -0.498 6.498 18 C -0.328 4.328 19 C 0.036 3.964 20 C -0.266 4.266 21 C 0.048 3.952 22 N -0.202 5.202 23 C -0.090 4.090 24 C 0.316 3.684 25 O -0.448 6.448 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.001 0.999 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.262 0.738 36 H 0.161 0.839 37 H 0.216 0.784 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.164 0.836 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.362 -5.308 14.461 16.311 hybrid contribution 0.962 -0.557 -0.032 1.112 sum -4.400 -5.865 14.429 16.185 Atomic orbital electron populations 1.22005 0.93914 1.02120 1.02197 1.21746 0.94304 0.96048 0.87272 0.94274 1.21371 0.83772 0.98811 0.94665 1.44134 1.00715 1.22105 1.66341 1.20490 0.93600 0.89676 0.92742 1.19222 0.98154 0.89105 1.29541 0.92169 1.25559 1.00071 0.98204 0.99773 1.70269 1.14489 1.22816 1.50839 0.85391 0.78285 0.81030 0.77083 1.19372 1.22132 1.22129 1.46436 1.63320 1.16072 1.08045 1.17971 0.77776 0.85366 0.83945 1.90610 1.54845 1.18594 1.85772 1.21008 1.18388 0.94831 0.98557 1.22262 0.83942 1.00492 0.89667 1.21158 1.09698 0.94353 1.01359 1.23275 0.89578 0.93262 0.89045 1.45487 1.49462 1.13156 1.12127 1.22510 1.02446 0.76796 1.07268 1.17107 0.79678 0.88198 0.83420 1.90633 1.57565 1.65833 1.30788 0.94125 0.89487 0.91981 0.92626 0.90213 0.99881 0.94991 0.95302 0.94979 0.73814 0.83942 0.78362 0.75027 0.91228 0.83637 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.48 71.98 0.68 -4.45 16 2 C 0.11 5.16 2.84 44.99 0.13 5.29 16 3 H 0.04 2.00 7.65 -2.38 -0.02 1.99 16 4 C 0.14 6.21 5.37 86.38 0.46 6.67 16 5 N -0.61 -32.68 2.81 -726.95 -2.04 -34.72 16 6 C 0.18 9.64 9.03 127.77 1.15 10.80 16 7 C -0.23 -13.25 7.99 84.03 0.67 -12.58 16 8 H 0.06 3.51 7.85 -2.91 -0.02 3.49 16 9 C -0.04 -2.45 5.09 84.86 0.43 -2.01 16 10 N -0.94 -58.46 10.75 21.65 0.23 -58.23 16 11 Si 0.95 47.66 29.57 68.60 2.03 49.69 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 14 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 15 N -0.68 -33.80 4.40 -446.12 -1.96 -35.76 16 16 C 0.56 27.84 7.70 86.57 0.67 28.50 16 17 O -0.61 -32.26 16.09 -4.17 -0.07 -32.33 16 18 C -0.32 -13.26 5.92 -19.79 -0.12 -13.37 16 19 C 0.06 1.84 9.69 22.83 0.22 2.06 16 20 C -0.24 -4.33 9.99 21.99 0.22 -4.11 16 21 C 0.18 2.71 10.25 83.56 0.86 3.56 16 22 N -0.50 -12.75 2.98 -673.18 -2.00 -14.75 16 23 C 0.05 0.95 10.34 127.77 1.32 2.27 16 24 C 0.51 20.13 7.44 85.16 0.63 20.76 16 25 O -0.56 -26.27 13.26 -4.93 -0.07 -26.33 16 26 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 27 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 30 H 0.08 3.03 7.92 -2.38 -0.02 3.01 16 31 H -0.02 -1.03 7.77 -2.38 -0.02 -1.05 16 32 H 0.03 1.82 6.85 -2.39 -0.02 1.80 16 33 H 0.03 1.31 7.93 -2.39 -0.02 1.29 16 34 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.42 21.45 4.00 -92.77 -0.37 21.08 16 36 H 0.14 4.26 7.71 -2.91 -0.02 4.24 16 37 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.23 0.32 8.02 -2.91 -0.02 0.30 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.15 0.96 8.00 -2.39 -0.02 0.94 16 41 H 0.08 1.85 7.38 -2.39 -0.02 1.83 16 Total: -1.00 -88.70 340.32 4.11 -84.59 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.66 Total: 24.47 kcal Atomic # 6 Polarization: 36.05 SS G_CDS: 7.33 Total: 43.38 kcal Atomic # 7 Polarization: -137.69 SS G_CDS: -5.78 Total: -143.46 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -0.13 Total: -58.66 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -88.70 4.11 -84.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754331494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.906 kcal (2) G-P(sol) polarization free energy of solvation -88.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds