Wall clock time and date at job start Tue Mar 31 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.36600 * 126.58531 * 2 1 4 4 C 1.47521 * 125.76576 * 359.97438 * 3 2 1 5 5 O 1.21600 * 120.00020 * 4.90673 * 4 3 2 6 6 N 1.34782 * 120.00138 * 184.90779 * 4 3 2 7 7 C 1.47423 * 125.64430 * 4.75208 * 6 4 3 8 8 C 1.54909 * 104.82909 * 204.17514 * 7 6 4 9 9 C 1.55156 * 101.58038 * 322.98715 * 8 7 6 10 10 C 1.47015 * 125.64928 * 184.80063 * 6 4 3 11 11 H 1.09000 * 109.88286 * 59.47886 * 10 6 4 12 12 C 1.53001 * 109.88697 * 298.31253 * 10 6 4 13 13 N 1.46493 * 109.47537 * 176.77661 * 12 10 6 14 14 C 1.36938 * 120.00255 * 184.97897 * 13 12 10 15 15 H 1.08003 * 120.00039 * 4.98660 * 14 13 12 16 16 C 1.38814 * 120.00262 * 184.99561 * 14 13 12 17 17 N 1.31616 * 120.00134 * 184.88159 * 16 14 13 18 18 Si 1.86797 * 119.99787 * 4.87423 * 16 14 13 19 19 H 1.48505 * 109.47030 * 94.70670 * 18 16 14 20 20 H 1.48496 * 109.47171 * 214.70455 * 18 16 14 21 21 H 1.48496 * 109.47536 * 334.70697 * 18 16 14 22 22 N 1.34392 * 108.46229 * 180.24058 * 3 2 1 23 23 N 1.28760 * 109.52587 * 359.58686 * 22 3 2 24 24 N 1.34817 * 126.58170 * 179.97438 * 2 1 3 25 25 C 1.46502 * 126.59319 * 0.02562 * 24 2 1 26 26 H 1.08999 * 109.47097 * 84.73605 * 1 2 3 27 27 H 1.09004 * 109.47329 * 204.73475 * 1 2 3 28 28 H 1.09002 * 109.47386 * 324.73115 * 1 2 3 29 29 H 1.09000 * 110.36936 * 85.33538 * 7 6 4 30 30 H 1.08999 * 110.45707 * 323.05739 * 7 6 4 31 31 H 1.09005 * 111.00653 * 204.91726 * 8 7 6 32 32 H 1.08999 * 111.01045 * 81.06287 * 8 7 6 33 33 H 1.09001 * 110.72524 * 277.13896 * 9 8 7 34 34 H 1.09002 * 110.72024 * 153.86595 * 9 8 7 35 35 H 1.09001 * 109.47206 * 296.78206 * 12 10 6 36 36 H 1.09001 * 109.47170 * 56.77332 * 12 10 6 37 37 H 0.96997 * 120.00111 * 4.97634 * 13 12 10 38 38 H 0.96997 * 119.99887 * 179.97438 * 17 16 14 39 39 H 1.09009 * 109.47007 * 89.99480 * 25 24 2 40 40 H 1.08998 * 109.47547 * 209.99366 * 25 24 2 41 41 H 1.09004 * 109.47000 * 329.99632 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5026 -0.0005 5 8 0.6896 2.7639 0.0890 6 7 2.7777 3.4974 -0.1003 7 6 4.2261 3.3239 -0.3134 8 6 4.8676 4.6151 0.2532 9 6 3.8229 5.6871 -0.1552 10 6 2.4827 4.9351 -0.0138 11 1 2.0297 5.1631 0.9510 12 6 1.5363 5.3412 -1.1452 13 7 1.1875 6.7572 -1.0057 14 6 0.2680 7.3222 -1.8486 15 1 -0.2592 6.7072 -2.5629 16 6 0.0136 8.6853 -1.7850 17 7 -0.9372 9.2127 -2.5267 18 14 1.0207 9.7712 -0.6466 19 1 2.1489 10.3704 -1.4039 20 1 0.1595 10.8522 -0.1037 21 1 1.5544 8.9543 0.4728 22 7 3.5983 0.6788 -0.0054 23 7 3.6298 -0.6084 0.0001 24 7 2.3104 -1.0826 0.0005 25 6 1.8863 -2.4849 0.0006 26 1 -0.3633 0.0943 -1.0233 27 1 -0.3634 -0.9334 0.4300 28 1 -0.3634 0.8390 0.5934 29 1 4.4442 3.2271 -1.3769 30 1 4.5890 2.4507 0.2286 31 1 5.8319 4.8107 -0.2160 32 1 4.9667 4.5591 1.3372 33 1 3.9796 6.0055 -1.1858 34 1 3.8600 6.5397 0.5228 35 1 2.0275 5.1809 -2.1050 36 1 0.6303 4.7372 -1.0956 37 1 1.6078 7.2945 -0.3161 38 1 -1.1151 10.1651 -2.4820 39 1 1.7814 -2.8328 -1.0271 40 1 2.6328 -3.0903 0.5147 41 1 0.9291 -2.5750 0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754606747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:28 Heat of formation + Delta-G solvation = 88.010870 kcal Electronic energy + Delta-G solvation = -23817.069674 eV Core-core repulsion = 20349.171080 eV Total energy + Delta-G solvation = -3467.898594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.44544 -39.79755 -37.34391 -35.23444 -34.54671 -32.52367 -31.65947 -31.33361 -29.22198 -28.10419 -27.74693 -25.23593 -24.03936 -22.35620 -21.80994 -21.43228 -20.41131 -19.32663 -17.83780 -17.17013 -16.69371 -16.33823 -15.97998 -15.08060 -14.47792 -14.41683 -14.30985 -13.92413 -13.71385 -13.61877 -13.41321 -13.27101 -12.99742 -12.88221 -12.67824 -12.57317 -12.32623 -12.03577 -11.62050 -11.50554 -11.19404 -10.85861 -10.74317 -10.52723 -10.43574 -10.37566 -10.04131 -9.80373 -9.51982 -9.29461 -8.79799 -8.37972 -7.12079 -5.68585 -3.03180 0.92733 1.62705 1.77982 3.03375 3.34326 3.41859 3.45153 3.50680 4.01115 4.05143 4.33768 4.48137 4.55150 4.66106 4.72940 4.79362 4.89698 5.05562 5.09960 5.26090 5.39251 5.43745 5.46015 5.57381 5.61864 5.69789 5.74947 5.88443 5.96748 6.01303 6.12003 6.12685 6.17454 6.39312 6.52533 6.82570 7.00920 7.63364 7.77644 8.09977 8.29518 8.50470 9.30623 10.02368 10.23412 11.50127 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.003843 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.425696 B = 7283.378433 C = 8172.944122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.124 3.876 3 C -0.096 4.096 4 C 0.614 3.386 5 O -0.525 6.525 6 N -0.597 5.597 7 C 0.096 3.904 8 C -0.134 4.134 9 C -0.127 4.127 10 C 0.129 3.871 11 H 0.077 0.923 12 C 0.148 3.852 13 N -0.753 5.753 14 C -0.236 4.236 15 H 0.089 0.911 16 C 0.002 3.998 17 N -0.936 5.936 18 Si 0.888 3.112 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.278 1.278 22 N -0.201 5.201 23 N -0.075 5.075 24 N -0.366 5.366 25 C 0.088 3.912 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.049 0.951 37 H 0.361 0.639 38 H 0.258 0.742 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -23.922 7.504 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.014 4.014 3 C -0.235 4.235 4 C 0.400 3.600 5 O -0.400 6.400 6 N -0.329 5.329 7 C -0.027 4.027 8 C -0.172 4.172 9 C -0.165 4.165 10 C 0.026 3.974 11 H 0.095 0.905 12 C 0.021 3.979 13 N -0.400 5.400 14 C -0.366 4.366 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.718 3.282 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.205 1.205 22 N -0.074 5.074 23 N -0.054 5.054 24 N -0.153 5.153 25 C -0.053 4.053 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.195 0.805 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.248 -24.271 7.368 27.357 hybrid contribution -0.284 0.873 0.695 1.151 sum 9.965 -23.399 8.063 26.679 Atomic orbital electron populations 1.20728 0.84463 1.04855 1.05363 1.21930 0.96310 0.86231 0.96918 1.21195 0.88862 0.95347 1.18126 1.16310 0.84784 0.81736 0.77149 1.90826 1.15405 1.82938 1.50831 1.48173 1.08246 1.05894 1.70634 1.22592 0.79487 0.99426 1.01225 1.22807 0.98638 0.94538 1.01235 1.22737 0.92841 0.97527 1.03410 1.21878 0.96514 0.78386 1.00590 0.90458 1.20967 0.96380 0.86582 0.94006 1.42657 1.51395 1.06180 1.39748 1.19055 1.13141 0.91973 1.12476 0.89342 1.24681 0.98858 0.96481 0.99328 1.69715 1.33231 1.11825 1.43639 0.86485 0.80097 0.80774 0.80812 1.21203 1.21827 1.20459 1.74582 1.19083 1.03776 1.10008 1.81970 0.96073 1.03734 1.23635 1.50241 1.06486 1.07710 1.50817 1.22156 1.02399 0.76087 1.04705 0.88680 0.90847 0.86851 0.91533 0.88229 0.89951 0.90887 0.89696 0.90179 0.95921 0.93288 0.80522 0.93166 0.89258 0.88142 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.53 36.00 0.34 -0.47 16 2 C 0.12 1.38 7.02 -81.88 -0.57 0.81 16 3 C -0.10 -1.36 6.83 -83.55 -0.57 -1.93 16 4 C 0.61 10.22 7.66 -12.47 -0.10 10.12 16 5 O -0.52 -9.95 13.63 5.28 0.07 -9.88 16 6 N -0.60 -9.51 3.06 -164.24 -0.50 -10.01 16 7 C 0.10 1.24 6.36 -2.53 -0.02 1.23 16 8 C -0.13 -1.54 7.08 -24.58 -0.17 -1.71 16 9 C -0.13 -1.85 6.00 -24.90 -0.15 -2.00 16 10 C 0.13 2.25 3.00 -66.96 -0.20 2.05 16 11 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.15 3.22 5.63 -4.05 -0.02 3.20 16 13 N -0.75 -18.90 5.22 -59.91 -0.31 -19.22 16 14 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 15 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 16 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 17 N -0.94 -30.22 13.97 55.49 0.78 -29.44 16 18 Si 0.89 22.63 28.02 -169.99 -4.76 17.86 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 21 H -0.28 -6.57 6.14 56.52 0.35 -6.22 16 22 N -0.20 -2.80 9.31 32.84 0.31 -2.49 16 23 N -0.07 -0.94 13.78 60.35 0.83 -0.10 16 24 N -0.37 -3.50 4.03 -63.59 -0.26 -3.76 16 25 C 0.09 0.35 11.33 59.85 0.68 1.02 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.36 7.05 -51.93 -0.37 0.00 16 28 H 0.11 1.21 6.63 -51.93 -0.34 0.87 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.26 5.76 -51.93 -0.30 0.96 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.30 7.80 -51.93 -0.40 0.90 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.50 8.07 -51.93 -0.42 0.09 16 36 H 0.05 1.18 6.61 -51.93 -0.34 0.83 16 37 H 0.36 8.69 5.12 -40.82 -0.21 8.48 16 38 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 39 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 40 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 0.16 7.08 -51.93 -0.37 -0.21 16 LS Contribution 333.40 15.07 5.02 5.02 Total: -1.00 -36.69 333.40 -5.61 -42.30 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.75 Total: 4.62 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -1.04 Total: 5.11 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: 0.84 Total: -65.03 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.76 Total: 17.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.69 -5.61 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754606747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.309 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds