Wall clock time and date at job start Tue Mar 31 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46497 * 109.44457 * 2 1 4 4 C 1.34776 * 120.00031 * 60.03920 * 3 2 1 5 5 O 1.21279 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99890 * 179.97438 * 4 3 2 7 7 C 1.50700 * 109.46871 * 179.97438 * 6 4 3 8 8 N 1.33246 * 125.52733 * 90.00208 * 7 6 4 9 9 C 1.30831 * 109.82732 * 179.97438 * 8 7 6 10 10 N 1.34431 * 108.08003 * 359.97438 * 9 8 7 11 11 H 0.96993 * 126.82334 * 180.02562 * 10 9 8 12 12 N 1.30709 * 125.52465 * 269.69166 * 7 6 4 13 13 C 1.53042 * 109.45924 * 240.03612 * 2 1 3 14 14 C 1.53196 * 109.33541 * 178.63102 * 13 2 1 15 15 N 1.46929 * 108.77326 * 54.61820 * 14 13 2 16 16 C 1.36939 * 120.62427 * 126.36981 * 15 14 13 17 17 H 1.08001 * 119.99489 * 207.68007 * 16 15 14 18 18 C 1.38803 * 120.00513 * 27.68909 * 16 15 14 19 19 N 1.31619 * 120.00080 * 17.35333 * 18 16 15 20 20 Si 1.86797 * 120.00079 * 197.35962 * 18 16 15 21 21 H 1.48508 * 109.47316 * 89.99334 * 20 18 16 22 22 H 1.48497 * 109.47528 * 209.99538 * 20 18 16 23 23 H 1.48498 * 109.47089 * 329.99933 * 20 18 16 24 24 C 1.46926 * 118.73807 * 306.38612 * 15 14 13 25 25 C 1.53041 * 109.48211 * 119.94782 * 2 1 3 26 26 H 1.08994 * 109.46922 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47450 * 299.96666 * 1 2 3 28 28 H 1.09002 * 109.46988 * 59.96824 * 1 2 3 29 29 H 0.97001 * 120.00378 * 240.02907 * 3 2 1 30 30 H 1.08999 * 109.46627 * 299.99587 * 6 4 3 31 31 H 1.08999 * 109.47208 * 59.99446 * 6 4 3 32 32 H 1.08003 * 125.95785 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.50121 * 58.66196 * 13 2 1 34 34 H 1.09000 * 109.49557 * 298.59309 * 13 2 1 35 35 H 1.09003 * 109.58304 * 174.40084 * 14 13 2 36 36 H 1.08989 * 109.58820 * 294.68622 * 14 13 2 37 37 H 0.97006 * 120.00073 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.58384 * 173.39781 * 24 15 14 39 39 H 1.08992 * 109.58575 * 293.68108 * 24 15 14 40 40 H 1.08997 * 109.46843 * 61.40868 * 25 2 1 41 41 H 1.08994 * 109.52583 * 301.33961 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0178 1.3814 0.0000 4 6 1.6924 2.2109 1.0112 5 8 0.9956 1.8139 1.9210 6 6 2.1946 3.6318 1.0115 7 6 1.6921 4.3419 2.2421 8 7 2.3194 4.3938 3.4165 9 6 1.6106 5.0899 4.2678 10 7 0.4957 5.5047 3.6416 11 1 -0.2185 6.0407 4.0202 12 7 0.5730 5.0116 2.3287 13 6 2.0399 -0.7207 -1.2501 14 6 3.5715 -0.6892 -1.2646 15 7 4.0680 -1.2495 -0.0003 16 6 4.9754 -2.2751 -0.0005 17 1 5.0081 -2.9672 0.8280 18 6 5.8532 -2.4250 -1.0651 19 7 6.0598 -1.4236 -1.8939 20 14 6.7413 -4.0482 -1.3219 21 1 5.9231 -4.9275 -2.1953 22 1 8.0560 -3.7969 -1.9650 23 1 6.9508 -4.7108 -0.0096 24 6 3.5720 -0.6887 1.2639 25 6 2.0405 -0.7203 1.2502 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5133 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 2.5750 1.6991 -0.7277 30 1 3.2846 3.6319 1.0111 31 1 1.8310 4.1459 0.1218 32 1 1.8751 5.2954 5.2946 33 1 1.6573 -0.2207 -2.1399 34 1 1.6974 -1.7554 -1.2386 35 1 3.9413 -1.2855 -2.0988 36 1 3.9148 0.3398 -1.3705 37 1 6.6730 -1.5285 -2.6382 38 1 3.9422 -1.2847 2.0981 39 1 3.9176 0.3398 1.3679 40 1 1.6980 -1.7550 1.2386 41 1 1.6583 -0.2204 2.1401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754631265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:44 Heat of formation + Delta-G solvation = 73.283908 kcal Electronic energy + Delta-G solvation = -24279.527238 eV Core-core repulsion = 20810.990035 eV Total energy + Delta-G solvation = -3468.537203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.17230 -39.97563 -37.33838 -34.36316 -33.36256 -32.10163 -31.62610 -30.82145 -29.87672 -28.61725 -27.36427 -24.05150 -22.97844 -22.28265 -21.85999 -20.67896 -19.84352 -18.61525 -18.42822 -17.12544 -16.67858 -15.57851 -15.26197 -15.01195 -14.79029 -14.52858 -13.88909 -13.58481 -13.49193 -13.26468 -13.14926 -12.96591 -12.48173 -12.22387 -12.02985 -11.67494 -11.58127 -11.24661 -11.13089 -10.88364 -10.69879 -10.32171 -10.25790 -10.20091 -10.10520 -9.88078 -9.82443 -9.66006 -9.56130 -9.03327 -8.56126 -8.41851 -6.62356 -5.76308 -3.16973 1.51745 2.53696 2.76675 2.97790 3.40158 3.47281 3.48591 3.61239 4.06152 4.53150 4.54656 4.82057 5.04235 5.35225 5.36973 5.41637 5.50485 5.52701 5.59849 5.68042 6.04356 6.11106 6.11838 6.24937 6.29346 6.36043 6.39724 6.47716 6.58448 6.75461 6.77403 6.90090 6.90735 7.03438 7.15087 7.34063 7.62422 7.82777 7.95855 8.00005 8.48386 8.60570 9.25104 9.88759 10.45779 11.32270 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026419 B = 0.003840 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.597564 B = 7288.977801 C = 7701.657356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.186 3.814 3 N -0.708 5.708 4 C 0.525 3.475 5 O -0.535 6.535 6 C -0.055 4.055 7 C 0.257 3.743 8 N -0.531 5.531 9 C 0.260 3.740 10 N -0.487 5.487 11 H 0.439 0.561 12 N -0.308 5.308 13 C -0.146 4.146 14 C 0.172 3.828 15 N -0.591 5.591 16 C -0.248 4.248 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.151 3.849 25 C -0.142 4.142 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.401 0.599 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.221 0.779 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.017 0.983 37 H 0.253 0.747 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.061 0.939 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 13.281 6.400 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.101 3.899 3 N -0.360 5.360 4 C 0.309 3.691 5 O -0.412 6.412 6 C -0.097 4.097 7 C -0.026 4.026 8 N -0.258 5.258 9 C -0.039 4.039 10 N -0.205 5.205 11 H 0.285 0.715 12 N -0.137 5.137 13 C -0.185 4.185 14 C 0.046 3.954 15 N -0.314 5.314 16 C -0.378 4.378 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.549 5.549 20 Si 0.732 3.268 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.025 3.975 25 C -0.182 4.182 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.236 0.764 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.238 0.762 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.268 12.874 6.372 18.257 hybrid contribution 0.352 -0.230 0.007 0.421 sum -10.916 12.644 6.378 17.880 Atomic orbital electron populations 1.22218 0.95542 1.01759 1.02264 1.20257 0.92475 0.80038 0.97164 1.46072 1.53074 1.12118 1.24708 1.19957 0.80438 0.86444 0.82254 1.90636 1.37998 1.76905 1.35657 1.19967 1.03676 0.92968 0.93102 1.23324 0.89280 0.95653 0.94326 1.70396 1.32842 1.21602 1.00997 1.26067 0.84272 0.93450 1.00122 1.48070 1.20066 1.43162 1.09222 0.71546 1.77959 1.20630 1.18820 0.96340 1.22524 1.01462 0.99963 0.94567 1.20738 0.86801 0.97123 0.90758 1.44048 1.48256 1.39614 0.99473 1.19224 1.09683 1.02875 1.06030 0.91738 1.24994 0.97245 0.97416 1.00035 1.70021 1.37982 1.28937 1.17995 0.86299 0.78763 0.83828 0.77955 1.21540 1.21842 1.20497 1.20824 0.90807 0.96209 0.89674 1.22380 0.99005 0.99524 0.97288 0.92366 0.91032 0.93368 0.76377 0.85931 0.86773 0.76234 0.92755 0.91112 0.89308 0.96543 0.93744 0.93228 0.96501 0.92014 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 8.40 37.16 0.31 -2.19 16 2 C 0.19 3.19 0.66 -131.77 -0.09 3.10 16 3 N -0.71 -11.08 4.10 -47.56 -0.20 -11.27 16 4 C 0.52 8.39 7.24 -10.98 -0.08 8.31 16 5 O -0.53 -10.23 12.25 5.56 0.07 -10.16 16 6 C -0.05 -0.71 6.33 -29.03 -0.18 -0.89 16 7 C 0.26 3.73 6.63 -156.85 -1.04 2.69 16 8 N -0.53 -7.51 11.19 -11.97 -0.13 -7.65 16 9 C 0.26 2.48 13.13 -90.65 -1.19 1.29 16 10 N -0.49 -4.59 7.45 29.53 0.22 -4.37 16 11 H 0.44 2.28 8.96 -182.34 -1.63 0.65 16 12 N -0.31 -4.23 12.80 32.42 0.41 -3.82 16 13 C -0.15 -2.64 4.96 -26.61 -0.13 -2.77 16 14 C 0.17 3.87 5.04 -3.71 -0.02 3.85 16 15 N -0.59 -14.63 2.99 -172.32 -0.52 -15.14 16 16 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 17 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 18 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 19 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 20 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C 0.15 3.33 6.26 -3.71 -0.02 3.31 16 25 C -0.14 -2.74 4.67 -26.61 -0.12 -2.87 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.23 6.17 -51.93 -0.32 0.91 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.40 5.72 7.27 -40.82 -0.30 5.42 16 30 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.22 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.09 2.27 6.03 -51.93 -0.31 1.96 16 36 H 0.02 0.37 6.95 -51.94 -0.36 0.01 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 39 H 0.02 0.39 7.75 -51.93 -0.40 -0.02 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.45 6.20 -51.93 -0.32 1.13 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -35.28 329.19 -9.38 -44.66 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.99 Total: 4.39 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -2.80 Total: 6.82 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: 0.41 Total: -67.31 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.28 -9.38 -44.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754631265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.940 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds