Wall clock time and date at job start Tue Mar 31 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00355 * 2 1 4 4 H 1.48501 * 109.47109 * 239.99881 * 3 2 1 5 5 H 1.48500 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47109 * 120.00019 * 3 2 1 7 7 C 1.38819 * 119.99327 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99497 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00119 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47431 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47445 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.88606 * 308.88045 * 12 11 10 14 14 C 1.55156 * 111.03588 * 72.78592 * 12 11 10 15 15 C 1.54333 * 103.01789 * 153.39771 * 14 12 11 16 16 N 1.47023 * 107.26777 * 338.14309 * 15 14 12 17 17 C 1.34773 * 125.65150 * 178.85491 * 16 15 14 18 18 O 1.21281 * 120.00442 * 179.68780 * 17 16 15 19 19 C 1.50705 * 119.99762 * 359.68239 * 17 16 15 20 20 N 1.46500 * 109.47081 * 180.02562 * 19 17 16 21 21 C 1.34429 * 126.81895 * 124.99841 * 20 19 17 22 22 N 1.30837 * 108.07952 * 180.02562 * 21 20 19 23 23 C 1.33246 * 109.82318 * 359.97438 * 22 21 20 24 24 N 1.30712 * 108.94935 * 0.27015 * 23 22 21 25 25 C 1.47421 * 108.70022 * 358.58279 * 16 15 14 26 26 H 0.97004 * 119.99235 * 359.97438 * 1 2 3 27 27 H 0.97006 * 119.99894 * 0.02562 * 9 7 2 28 28 H 1.09007 * 109.46890 * 60.00752 * 10 9 7 29 29 H 1.08998 * 109.47652 * 300.01221 * 10 9 7 30 30 H 1.08998 * 109.47005 * 60.00238 * 11 10 9 31 31 H 1.09005 * 109.47392 * 300.00590 * 11 10 9 32 32 H 1.09005 * 110.71820 * 271.95236 * 14 12 11 33 33 H 1.08993 * 110.71982 * 35.05186 * 14 12 11 34 34 H 1.08998 * 109.99470 * 218.66447 * 15 14 12 35 35 H 1.09004 * 109.77703 * 97.49811 * 15 14 12 36 36 H 1.09002 * 109.47196 * 60.00345 * 19 17 16 37 37 H 1.08995 * 109.47509 * 300.00521 * 19 17 16 38 38 H 1.08000 * 125.96300 * 0.02949 * 21 20 19 39 39 H 1.08002 * 125.52127 * 179.97438 * 23 22 21 40 40 H 1.09002 * 110.36817 * 143.20130 * 25 16 15 41 41 H 1.09000 * 110.36678 * 265.52036 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0017 11 6 1.0635 -4.8197 -0.0021 12 6 1.8284 -6.1449 -0.0026 13 1 2.5762 -6.1616 -0.7954 14 6 2.4780 -6.4135 1.3805 15 6 2.5702 -7.9533 1.4282 16 7 1.5799 -8.4794 0.4773 17 6 1.3636 -9.7823 0.2088 18 8 0.5127 -10.1030 -0.5937 19 6 2.1791 -10.8407 0.9059 20 7 1.7563 -12.1654 0.4448 21 6 2.5387 -13.1220 -0.0843 22 7 1.7846 -14.1531 -0.3671 23 6 0.5209 -13.8936 -0.0337 24 7 0.4521 -12.6864 0.4627 25 6 0.8583 -7.3459 -0.1291 26 1 -0.4849 0.8401 0.0004 27 1 0.3553 -2.3880 -0.0005 28 1 2.6850 -3.7151 0.8879 29 1 2.6839 -3.7143 -0.8920 30 1 0.4365 -4.7614 -0.8918 31 1 0.4370 -4.7626 0.8882 32 1 3.4694 -5.9637 1.4348 33 1 1.8425 -6.0411 2.1839 34 1 2.3444 -8.3093 2.4334 35 1 3.5707 -8.2722 1.1358 36 1 2.0282 -10.7652 1.9827 37 1 3.2347 -10.6962 0.6760 38 1 3.6040 -13.0517 -0.2475 39 1 -0.3124 -14.5694 -0.1583 40 1 0.6428 -7.5507 -1.1778 41 1 -0.0641 -7.1477 0.4168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754941207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:08 Heat of formation + Delta-G solvation = 73.764049 kcal Electronic energy + Delta-G solvation = -22451.803493 eV Core-core repulsion = 18983.287110 eV Total energy + Delta-G solvation = -3468.516382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.36533 -40.33628 -38.05096 -35.23767 -34.39047 -33.09404 -31.49011 -31.05146 -29.74237 -28.90512 -27.01904 -24.14521 -23.22162 -22.43631 -22.28377 -21.50081 -20.29000 -19.65699 -17.85388 -17.50545 -17.17251 -16.58951 -15.97454 -15.42627 -15.17167 -14.79754 -14.72392 -14.36908 -14.19917 -13.77600 -13.54148 -13.35614 -13.12640 -12.95087 -12.69303 -12.30402 -12.15426 -11.73689 -11.41630 -11.12849 -10.84927 -10.73425 -10.63260 -10.54760 -10.39654 -10.32151 -10.09183 -10.05779 -9.85015 -9.70728 -8.97095 -8.89295 -6.95197 -5.78931 -3.07984 1.28947 1.80647 2.17778 2.61368 2.71394 3.41798 3.46025 3.47455 3.83042 3.99436 4.06418 4.33862 4.45011 4.48197 4.54135 4.58865 4.70004 4.91586 4.94811 5.11306 5.26162 5.49289 5.53158 5.57796 5.68362 5.73468 5.77702 5.87020 5.95398 6.01911 6.13796 6.17919 6.30728 6.31793 6.39032 6.78309 6.82944 7.11412 7.66226 7.72787 7.78617 8.40089 9.50816 10.09229 10.43212 11.43899 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.059913 B = 0.002148 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.234808 B =13031.451936 C =13275.262752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.093 4.093 13 H 0.086 0.914 14 C -0.127 4.127 15 C 0.094 3.906 16 N -0.616 5.616 17 C 0.514 3.486 18 O -0.512 6.512 19 C 0.116 3.884 20 N -0.371 5.371 21 C 0.255 3.745 22 N -0.545 5.545 23 C 0.192 3.808 24 N -0.289 5.289 25 C 0.111 3.889 26 H 0.256 0.744 27 H 0.384 0.616 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.220 0.780 39 H 0.217 0.783 40 H 0.079 0.921 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 -24.861 4.305 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.113 4.113 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.029 4.029 16 N -0.352 5.352 17 C 0.299 3.701 18 O -0.386 6.386 19 C -0.010 4.010 20 N -0.163 5.163 21 C -0.042 4.042 22 N -0.271 5.271 23 C -0.111 4.111 24 N -0.116 5.116 25 C -0.011 4.011 26 H 0.066 0.934 27 H 0.217 0.783 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.097 0.903 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.980 -24.908 3.985 26.172 hybrid contribution 0.451 1.175 0.050 1.260 sum 7.432 -23.733 4.035 25.194 Atomic orbital electron populations 1.69654 1.05126 1.25808 1.57612 1.24766 0.95557 0.97769 1.03004 0.86251 0.78509 0.83478 0.77835 1.21256 1.21660 1.21265 1.19179 0.90978 0.84206 1.42890 0.91255 1.42368 1.05914 1.00075 1.89540 1.20613 0.93434 0.85465 0.97704 1.21678 0.98699 0.92444 1.02626 1.22342 0.97450 0.94048 0.97468 0.89588 1.22744 1.02930 0.92521 0.98287 1.22218 0.91922 0.96048 0.92679 1.48494 1.38628 1.04870 1.43209 1.20006 0.84621 0.82075 0.83350 1.90821 1.33131 1.80452 1.34222 1.21554 0.99957 0.78464 1.01027 1.50014 1.06134 1.12920 1.47206 1.26091 0.99570 0.84498 0.94066 1.70538 1.03012 1.27761 1.25830 1.26048 0.95199 0.92865 0.96966 1.78216 0.97490 1.11504 1.24345 1.22394 0.95369 0.84073 0.99242 0.93429 0.78293 0.96329 0.96553 0.91456 0.91497 0.89373 0.89924 0.91116 0.91146 0.86334 0.85196 0.76421 0.76662 0.90280 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.33 5.60 -59.91 -0.34 -18.67 16 10 C 0.16 2.92 6.16 -4.04 -0.02 2.89 16 11 C -0.12 -1.68 4.84 -26.73 -0.13 -1.81 16 12 C -0.09 -1.01 3.01 -88.47 -0.27 -1.28 16 13 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.13 -1.08 5.90 -24.89 -0.15 -1.23 16 15 C 0.09 0.60 6.49 -3.06 -0.02 0.58 16 16 N -0.62 -5.88 3.33 -170.52 -0.57 -6.45 16 17 C 0.51 5.57 7.89 -10.98 -0.09 5.48 16 18 O -0.51 -8.15 15.99 5.56 0.09 -8.06 16 19 C 0.12 0.75 6.22 -5.19 -0.03 0.71 16 20 N -0.37 -3.51 3.41 -63.81 -0.22 -3.73 16 21 C 0.25 2.00 12.63 -90.65 -1.14 0.86 16 22 N -0.54 -5.72 11.19 -15.83 -0.18 -5.89 16 23 C 0.19 2.03 13.03 -91.81 -1.20 0.84 16 24 N -0.29 -3.60 11.80 29.29 0.35 -3.25 16 25 C 0.11 1.24 6.37 -2.53 -0.02 1.22 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.38 10.09 7.67 -40.82 -0.31 9.77 16 28 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.98 7.97 -51.93 -0.41 0.57 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.13 0.27 8.09 -51.93 -0.42 -0.15 16 38 H 0.22 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.22 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 41 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -37.97 347.99 -9.37 -47.34 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.15 Total: 2.83 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -3.31 Total: 0.90 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.23 Total: -65.42 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.97 -9.37 -47.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754941207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.106 kcal (2) G-P(sol) polarization free energy of solvation -37.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds