Wall clock time and date at job start Tue Mar 31 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30827 * 125.96320 * 2 1 4 4 C 1.33236 * 109.83381 * 179.86972 * 3 2 1 5 5 C 1.50697 * 125.52974 * 180.20043 * 4 3 2 6 6 C 1.50701 * 109.47092 * 270.25789 * 5 4 3 7 7 O 1.21277 * 120.00066 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99872 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99938 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.84648 * 25.32425 * 9 8 6 11 11 C 1.53780 * 113.61476 * 156.52364 * 9 8 6 12 12 C 1.53785 * 87.08151 * 89.11288 * 11 9 8 13 13 H 1.08991 * 113.61522 * 270.79923 * 12 11 9 14 14 C 1.52999 * 113.61447 * 139.97885 * 12 11 9 15 15 N 1.46500 * 109.47088 * 175.00430 * 14 12 11 16 16 C 1.36940 * 119.99824 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99979 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00007 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46987 * 89.99917 * 20 18 16 22 22 H 1.48499 * 109.47095 * 209.99988 * 20 18 16 23 23 H 1.48502 * 109.47053 * 330.00012 * 20 18 16 24 24 C 1.53782 * 113.60960 * 254.13327 * 9 8 6 25 25 N 1.30721 * 108.94296 * 0.40224 * 4 3 2 26 26 N 1.34426 * 125.95770 * 180.31205 * 2 1 3 27 27 H 0.97004 * 126.82657 * 359.94238 * 26 2 1 28 28 H 1.09001 * 109.46953 * 269.68737 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.68335 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68966 * 1 2 3 31 31 H 1.08996 * 109.47577 * 30.25812 * 5 4 3 32 32 H 1.09004 * 109.46742 * 150.26069 * 5 4 3 33 33 H 0.96995 * 119.99995 * 359.97438 * 8 6 5 34 34 H 1.08999 * 113.61086 * 203.66116 * 11 9 8 35 35 H 1.08997 * 113.61528 * 334.48242 * 11 9 8 36 36 H 1.09000 * 109.47031 * 295.00438 * 14 12 11 37 37 H 1.08997 * 109.47410 * 54.99927 * 14 12 11 38 38 H 0.96995 * 120.00189 * 359.97438 * 15 14 12 39 39 H 0.97009 * 119.99904 * 180.02562 * 19 18 16 40 40 H 1.09002 * 113.61746 * 25.42929 * 24 9 8 41 41 H 1.09002 * 113.61262 * 156.33836 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6888 0.0028 5 6 4.7372 1.6236 0.0081 6 6 5.1313 1.9431 -1.4110 7 8 4.5134 1.4590 -2.3355 8 7 6.1709 2.7661 -1.6527 9 6 6.5536 3.0771 -3.0322 10 1 5.7260 2.9752 -3.7342 11 6 7.3227 4.4011 -3.1745 12 6 8.6079 3.5883 -2.9448 13 1 8.8855 3.4979 -1.8947 14 6 9.7753 4.0237 -3.8326 15 7 10.9786 3.2764 -3.4585 16 6 12.1565 3.4994 -4.1203 17 1 12.1984 4.2259 -4.9183 18 6 13.2967 2.7917 -3.7654 19 7 14.4287 3.0056 -4.4018 20 14 13.2244 1.5356 -2.3846 21 1 12.8738 0.2052 -2.9435 22 1 14.5480 1.4585 -1.7158 23 1 12.1938 1.9447 -1.3968 24 6 7.8398 2.3688 -3.4892 25 7 3.6195 -0.6169 -0.0040 26 7 2.2964 -1.0881 -0.0059 27 1 2.0093 -2.0147 -0.0102 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 0.8928 -0.5089 30 1 -0.3633 -0.8872 -0.5186 31 1 4.4702 2.5442 0.5270 32 1 5.5743 1.1480 0.5193 33 1 6.6652 3.1530 -0.9132 34 1 7.2558 4.8401 -4.1699 35 1 7.1098 5.1173 -2.3809 36 1 9.5328 3.8230 -4.8762 37 1 9.9544 5.0907 -3.7001 38 1 10.9410 2.6242 -2.7415 39 1 15.2254 2.5108 -4.1541 40 1 8.0451 1.4448 -2.9486 41 1 7.9140 2.2533 -4.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755471661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:45 Heat of formation + Delta-G solvation = 78.989409 kcal Electronic energy + Delta-G solvation = -22420.279448 eV Core-core repulsion = 18951.989654 eV Total energy + Delta-G solvation = -3468.289794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.47229 -40.22912 -38.39151 -34.69592 -33.99739 -33.18807 -32.69624 -31.20318 -30.17401 -28.13445 -27.05240 -25.57384 -23.39509 -22.24489 -21.43651 -21.29413 -20.31349 -19.21328 -18.22370 -17.62949 -17.30577 -16.07413 -15.81945 -15.54394 -14.96559 -14.56414 -14.42709 -14.30485 -13.90884 -13.76336 -13.47065 -13.25968 -13.17438 -12.72941 -12.47168 -12.41027 -12.25498 -12.14779 -11.73991 -11.38922 -10.87627 -10.62989 -10.49813 -10.34875 -10.23978 -10.16512 -10.05025 -9.86787 -9.70742 -9.55457 -9.06924 -8.84702 -7.18692 -5.74099 -3.08881 1.25616 2.26824 2.42099 2.49045 3.11836 3.38942 3.42291 3.46987 3.60726 4.15792 4.37771 4.57881 4.61542 4.67712 4.70784 4.80866 4.90291 5.02008 5.03826 5.04773 5.25154 5.30860 5.55907 5.66743 5.71977 5.85424 5.88402 5.90583 5.98359 6.06884 6.14232 6.15589 6.29144 6.57619 6.70040 6.71638 6.85535 7.36397 7.76771 8.02986 8.08865 8.45324 9.25031 9.97600 10.17889 11.44471 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002609 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.518266 B =10728.732356 C =11416.078407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.531 5.531 4 C 0.251 3.749 5 C -0.050 4.050 6 C 0.524 3.476 7 O -0.531 6.531 8 N -0.709 5.709 9 C 0.117 3.883 10 H 0.099 0.901 11 C -0.135 4.135 12 C -0.119 4.119 13 H 0.087 0.913 14 C 0.166 3.834 15 N -0.756 5.756 16 C -0.242 4.242 17 H 0.089 0.911 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.886 3.114 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.278 1.278 24 C -0.142 4.142 25 N -0.302 5.302 26 N -0.482 5.482 27 H 0.440 0.560 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.403 0.597 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.027 0.973 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.613 -4.144 12.296 32.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.261 5.261 4 C -0.032 4.032 5 C -0.093 4.093 6 C 0.309 3.691 7 O -0.406 6.406 8 N -0.360 5.360 9 C 0.012 3.988 10 H 0.117 0.883 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.105 0.895 14 C 0.039 3.961 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.107 0.893 18 C -0.194 4.194 19 N -0.584 5.584 20 Si 0.717 3.283 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.180 4.180 25 N -0.131 5.131 26 N -0.200 5.200 27 H 0.285 0.715 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.237 0.763 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -29.320 -4.414 11.449 31.784 hybrid contribution 0.147 -1.458 1.307 1.964 sum -29.173 -5.872 12.756 32.377 Atomic orbital electron populations 1.20398 0.83571 1.05168 1.04487 1.24371 0.96629 0.82761 0.95810 1.70282 1.01231 1.29586 1.24955 1.23222 0.92597 0.89734 0.97693 1.19904 0.93985 0.99048 0.96338 1.20140 0.79883 0.78597 0.90520 1.90734 1.52928 1.51095 1.45856 1.45600 1.32793 1.48942 1.08666 1.21927 0.97194 0.96609 0.83068 0.88300 1.23284 0.95397 0.95554 1.03128 1.22869 0.94510 0.95943 1.00422 0.89499 1.20621 0.85029 0.94894 0.95532 1.42701 1.06985 1.47966 1.42441 1.19083 0.85631 1.19142 1.13386 0.89271 1.24686 0.95551 0.99843 0.99308 1.69708 1.00053 1.44939 1.43666 0.86519 0.76658 0.82313 0.82848 1.21129 1.21795 1.20403 1.23504 0.94624 0.97962 1.01949 1.78007 0.96716 1.12221 1.26168 1.47936 1.04234 1.10057 1.57775 0.71453 0.88961 0.88259 0.89835 0.85840 0.86238 0.76286 0.88512 0.91031 0.95352 0.95555 0.80733 0.93118 0.91457 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.51 36.01 0.38 0.09 16 2 C 0.28 2.52 8.24 -155.70 -1.28 1.24 16 3 N -0.53 -6.44 11.19 -8.16 -0.09 -6.53 16 4 C 0.25 3.12 6.63 -156.85 -1.04 2.08 16 5 C -0.05 -0.48 6.33 -29.04 -0.18 -0.66 16 6 C 0.52 6.54 7.82 -10.98 -0.09 6.45 16 7 O -0.53 -9.02 15.65 5.56 0.09 -8.93 16 8 N -0.71 -7.50 5.26 -53.01 -0.28 -7.78 16 9 C 0.12 1.42 4.29 -67.12 -0.29 1.14 16 10 H 0.10 1.32 7.50 -51.93 -0.39 0.93 16 11 C -0.14 -1.52 7.38 -25.92 -0.19 -1.71 16 12 C -0.12 -1.71 3.65 -89.66 -0.33 -2.03 16 13 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 14 C 0.17 3.16 6.10 -4.04 -0.02 3.14 16 15 N -0.76 -18.13 5.41 -59.91 -0.32 -18.45 16 16 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 19 N -0.94 -29.81 13.97 55.49 0.78 -29.03 16 20 Si 0.89 22.46 27.74 -169.99 -4.71 17.75 16 21 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 24 C -0.14 -2.01 7.45 -25.77 -0.19 -2.20 16 25 N -0.30 -3.84 12.80 32.42 0.41 -3.42 16 26 N -0.48 -4.31 7.45 32.62 0.24 -4.07 16 27 H 0.44 2.21 8.96 -182.33 -1.63 0.57 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 3.15 8.70 -40.82 -0.36 2.80 16 34 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.03 0.55 7.85 -51.93 -0.41 0.15 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.36 8.44 5.53 -40.82 -0.23 8.21 16 39 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -39.47 348.76 -9.36 -48.83 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.24 Total: 6.04 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -3.49 Total: 0.34 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: 0.74 Total: -69.28 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -39.47 -9.36 -48.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755471661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.820 kcal (2) G-P(sol) polarization free energy of solvation -39.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds