Wall clock time and date at job start Tue Mar 31 2020 03:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30827 * 125.96320 * 2 1 4 4 C 1.33236 * 109.83381 * 179.86972 * 3 2 1 5 5 C 1.50697 * 125.52974 * 180.20043 * 4 3 2 6 6 C 1.50701 * 109.47092 * 270.25789 * 5 4 3 7 7 O 1.21277 * 120.00066 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99872 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99938 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.84648 * 25.32425 * 9 8 6 11 11 C 1.53780 * 113.61476 * 156.52364 * 9 8 6 12 12 C 1.53785 * 87.08151 * 89.11288 * 11 9 8 13 13 H 1.08991 * 113.61522 * 270.79923 * 12 11 9 14 14 C 1.52999 * 113.61447 * 139.97885 * 12 11 9 15 15 N 1.46500 * 109.47088 * 175.00430 * 14 12 11 16 16 C 1.36940 * 119.99824 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00091 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99979 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00007 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46987 * 89.99917 * 20 18 16 22 22 H 1.48499 * 109.47095 * 209.99988 * 20 18 16 23 23 H 1.48502 * 109.47053 * 330.00012 * 20 18 16 24 24 C 1.53782 * 113.60960 * 254.13327 * 9 8 6 25 25 N 1.30721 * 108.94296 * 0.40224 * 4 3 2 26 26 N 1.34426 * 125.95770 * 180.31205 * 2 1 3 27 27 H 0.97004 * 126.82657 * 359.94238 * 26 2 1 28 28 H 1.09001 * 109.46953 * 269.68737 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.68335 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68966 * 1 2 3 31 31 H 1.08996 * 109.47577 * 30.25812 * 5 4 3 32 32 H 1.09004 * 109.46742 * 150.26069 * 5 4 3 33 33 H 0.96995 * 119.99995 * 359.97438 * 8 6 5 34 34 H 1.08999 * 113.61086 * 203.66116 * 11 9 8 35 35 H 1.08997 * 113.61528 * 334.48242 * 11 9 8 36 36 H 1.09000 * 109.47031 * 295.00438 * 14 12 11 37 37 H 1.08997 * 109.47410 * 54.99927 * 14 12 11 38 38 H 0.96995 * 120.00189 * 359.97438 * 15 14 12 39 39 H 0.97009 * 119.99904 * 180.02562 * 19 18 16 40 40 H 1.09002 * 113.61746 * 25.42929 * 24 9 8 41 41 H 1.09002 * 113.61262 * 156.33836 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6888 0.0028 5 6 4.7372 1.6236 0.0081 6 6 5.1313 1.9431 -1.4110 7 8 4.5134 1.4590 -2.3355 8 7 6.1709 2.7661 -1.6527 9 6 6.5536 3.0771 -3.0322 10 1 5.7260 2.9752 -3.7342 11 6 7.3227 4.4011 -3.1745 12 6 8.6079 3.5883 -2.9448 13 1 8.8855 3.4979 -1.8947 14 6 9.7753 4.0237 -3.8326 15 7 10.9786 3.2764 -3.4585 16 6 12.1565 3.4994 -4.1203 17 1 12.1984 4.2259 -4.9183 18 6 13.2967 2.7917 -3.7654 19 7 14.4287 3.0056 -4.4018 20 14 13.2244 1.5356 -2.3846 21 1 12.8738 0.2052 -2.9435 22 1 14.5480 1.4585 -1.7158 23 1 12.1938 1.9447 -1.3968 24 6 7.8398 2.3688 -3.4892 25 7 3.6195 -0.6169 -0.0040 26 7 2.2964 -1.0881 -0.0059 27 1 2.0093 -2.0147 -0.0102 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 0.8928 -0.5089 30 1 -0.3633 -0.8872 -0.5186 31 1 4.4702 2.5442 0.5270 32 1 5.5743 1.1480 0.5193 33 1 6.6652 3.1530 -0.9132 34 1 7.2558 4.8401 -4.1699 35 1 7.1098 5.1173 -2.3809 36 1 9.5328 3.8230 -4.8762 37 1 9.9544 5.0907 -3.7001 38 1 10.9410 2.6242 -2.7415 39 1 15.2254 2.5108 -4.1541 40 1 8.0451 1.4448 -2.9486 41 1 7.9140 2.2533 -4.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755471661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:44 Heat of formation + Delta-G solvation = 48.287263 kcal Electronic energy + Delta-G solvation = -22421.610793 eV Core-core repulsion = 18951.989654 eV Total energy + Delta-G solvation = -3469.621139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.19426 -41.24092 -39.48837 -36.48486 -34.74823 -34.39968 -33.37771 -33.18352 -30.93133 -28.93938 -28.44043 -26.61859 -24.99613 -23.36781 -22.77083 -22.13604 -21.14327 -20.45945 -19.46996 -18.91937 -18.31188 -17.05258 -16.66010 -16.55637 -16.42503 -16.01614 -15.70022 -15.27714 -15.08070 -14.79588 -14.57928 -14.45048 -13.88306 -13.64377 -13.63094 -13.51844 -13.40464 -13.17188 -12.95251 -12.76733 -12.69089 -12.16213 -11.87270 -11.71102 -11.39541 -11.32232 -11.17268 -11.13386 -10.95489 -10.89004 -10.48861 -10.04787 -9.26960 -8.02718 -5.35494 0.54341 1.36894 1.41435 1.48561 1.56115 1.61120 1.71952 2.29381 2.48521 2.99398 3.28396 3.48126 3.51938 3.59868 3.78376 3.88081 3.91252 3.98699 4.12925 4.39051 4.41030 4.55641 4.69816 4.73225 4.75203 4.86711 4.91175 4.92109 5.00782 5.04362 5.13751 5.22012 5.27125 5.34013 5.36206 5.67437 5.76981 6.18216 6.21782 6.52894 7.03903 7.09000 7.21939 7.86483 8.05412 9.18949 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.002609 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.518266 B =10728.732356 C =11416.078407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.567 5.567 4 C 0.235 3.765 5 C -0.046 4.046 6 C 0.524 3.476 7 O -0.582 6.582 8 N -0.695 5.695 9 C 0.125 3.875 10 H 0.087 0.913 11 C -0.115 4.115 12 C -0.113 4.113 13 H 0.099 0.901 14 C 0.161 3.839 15 N -0.758 5.758 16 C -0.235 4.235 17 H 0.055 0.945 18 C -0.069 4.069 19 N -0.985 5.985 20 Si 0.958 3.042 21 H -0.282 1.282 22 H -0.295 1.295 23 H -0.247 1.247 24 C -0.147 4.147 25 N -0.342 5.342 26 N -0.476 5.476 27 H 0.454 0.546 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.419 0.581 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.022 0.978 37 H 0.027 0.973 38 H 0.366 0.634 39 H 0.257 0.743 40 H 0.057 0.943 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.917 -4.392 14.710 35.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.297 5.297 4 C -0.049 4.049 5 C -0.088 4.088 6 C 0.310 3.690 7 O -0.461 6.461 8 N -0.347 5.347 9 C 0.019 3.981 10 H 0.105 0.895 11 C -0.154 4.154 12 C -0.131 4.131 13 H 0.117 0.883 14 C 0.035 3.965 15 N -0.403 5.403 16 C -0.366 4.366 17 H 0.073 0.927 18 C -0.260 4.260 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.209 1.209 22 H -0.222 1.222 23 H -0.171 1.171 24 C -0.186 4.186 25 N -0.171 5.171 26 N -0.197 5.197 27 H 0.303 0.697 28 H 0.133 0.867 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.257 0.743 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.199 0.801 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -31.672 -4.649 13.901 34.899 hybrid contribution 0.789 -1.346 0.451 1.624 sum -30.882 -5.994 14.351 34.578 Atomic orbital electron populations 1.20650 0.80043 1.06359 1.06257 1.25271 0.98345 0.82024 0.93621 1.70290 1.01578 1.31210 1.26662 1.23723 0.93550 0.90071 0.97522 1.20043 0.94050 1.00154 0.94568 1.20644 0.79393 0.77769 0.91196 1.90711 1.54717 1.53107 1.47607 1.45483 1.32330 1.48288 1.08590 1.21733 0.95898 0.96686 0.83739 0.89489 1.23202 0.92332 0.95329 1.04494 1.22812 0.93556 0.96882 0.99887 0.88314 1.20827 0.84926 0.94407 0.96315 1.42726 1.06902 1.48571 1.42133 1.19077 0.87543 1.17611 1.12359 0.92733 1.25568 0.95116 1.02679 1.02640 1.69897 1.00973 1.46731 1.46001 0.85357 0.77197 0.79063 0.79853 1.20889 1.22171 1.17115 1.23521 0.96049 0.97659 1.01387 1.77886 0.98903 1.12768 1.27580 1.47883 1.03296 1.11044 1.57427 0.69719 0.86734 0.88372 0.87245 0.82984 0.84022 0.74287 0.87953 0.88403 0.96024 0.95495 0.80120 0.93379 0.92425 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.51 71.24 0.75 0.37 16 2 C 0.29 4.70 8.24 138.23 1.14 5.84 16 3 N -0.57 -13.22 11.19 -179.73 -2.01 -15.23 16 4 C 0.23 5.63 6.63 138.63 0.92 6.55 16 5 C -0.05 -0.80 6.33 29.10 0.18 -0.61 16 6 C 0.52 12.29 7.82 87.66 0.69 12.97 16 7 O -0.58 -19.68 15.65 -3.02 -0.05 -19.72 16 8 N -0.69 -12.97 5.26 -440.03 -2.32 -15.28 16 9 C 0.13 2.80 4.29 45.52 0.20 2.99 16 10 H 0.09 2.23 7.50 -2.39 -0.02 2.21 16 11 C -0.12 -2.25 7.38 31.12 0.23 -2.02 16 12 C -0.11 -2.96 3.65 -10.17 -0.04 -3.00 16 13 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.16 5.94 6.10 86.38 0.53 6.46 16 15 N -0.76 -35.55 5.41 -343.45 -1.86 -37.41 16 16 C -0.23 -13.67 10.47 84.03 0.88 -12.79 16 17 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 18 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 19 N -0.99 -64.23 13.97 21.65 0.30 -63.93 16 20 Si 0.96 46.06 27.74 68.60 1.90 47.96 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.25 -10.48 6.52 99.48 0.65 -9.84 16 24 C -0.15 -3.97 7.45 31.22 0.23 -3.74 16 25 N -0.34 -8.49 12.80 -51.34 -0.66 -9.14 16 26 N -0.48 -8.05 7.45 -50.71 -0.38 -8.43 16 27 H 0.45 4.03 8.96 -213.09 -1.91 2.12 16 28 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 5.03 8.70 -92.71 -0.81 4.22 16 34 H 0.10 1.94 8.10 -2.39 -0.02 1.92 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.02 0.83 7.85 -2.39 -0.02 0.82 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.37 16.27 5.53 -92.71 -0.51 15.76 16 39 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 2.39 7.90 -2.39 -0.02 2.37 16 Total: -1.00 -88.36 348.76 -1.10 -89.46 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -2.21 Total: 22.37 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.17 Total: 9.37 kcal Atomic # 7 Polarization: -142.51 SS G_CDS: -6.92 Total: -149.43 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.90 Total: 47.96 kcal Total: -88.36 -1.10 -89.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755471661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.744 kcal (2) G-P(sol) polarization free energy of solvation -88.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds