Wall clock time and date at job start Tue Mar 31 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46837 * 2 1 4 4 C 1.53001 * 109.46662 * 120.00034 * 2 1 3 5 5 N 1.46503 * 109.46522 * 175.00185 * 4 2 1 6 6 C 1.46501 * 119.99520 * 269.99664 * 5 4 2 7 7 C 1.34778 * 120.00315 * 90.00004 * 5 4 2 8 8 O 1.21470 * 119.99603 * 3.63361 * 7 5 4 9 9 C 1.48459 * 119.99866 * 183.63001 * 7 5 4 10 10 C 1.41149 * 120.53532 * 101.34041 * 9 7 5 11 11 C 1.35267 * 119.86754 * 180.29739 * 10 9 7 12 12 N 1.35695 * 120.99986 * 359.45979 * 11 10 9 13 13 C 1.46500 * 119.44285 * 180.25003 * 12 11 10 14 14 C 1.34605 * 121.12092 * 0.52154 * 12 11 10 15 15 O 1.22004 * 119.96593 * 179.74221 * 14 12 11 16 16 C 1.38291 * 120.54044 * 281.35520 * 9 7 5 17 17 N 1.46501 * 109.47054 * 239.99879 * 2 1 3 18 18 C 1.36935 * 119.99626 * 85.00318 * 17 2 1 19 19 H 1.07999 * 120.00511 * 359.97438 * 18 17 2 20 20 C 1.38812 * 119.99788 * 180.02562 * 18 17 2 21 21 N 1.31620 * 120.00198 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47260 * 60.00092 * 22 20 18 24 24 H 1.48501 * 109.46835 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47139 * 299.99852 * 22 20 18 26 26 H 1.09001 * 109.46797 * 59.99836 * 1 2 3 27 27 H 1.08997 * 109.47320 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47345 * 300.00025 * 1 2 3 29 29 H 1.08995 * 109.47637 * 55.00026 * 4 2 1 30 30 H 1.09003 * 109.47337 * 294.99677 * 4 2 1 31 31 H 1.08999 * 109.47111 * 264.68340 * 6 5 4 32 32 H 1.08994 * 109.47575 * 24.68662 * 6 5 4 33 33 H 1.08998 * 109.46841 * 144.69283 * 6 5 4 34 34 H 1.07999 * 120.06451 * 0.02562 * 10 9 7 35 35 H 1.08004 * 119.49851 * 179.72025 * 11 10 9 36 36 H 1.09004 * 109.46745 * 270.27246 * 13 12 11 37 37 H 1.08997 * 109.47316 * 30.26516 * 13 12 11 38 38 H 1.08993 * 109.47489 * 150.27152 * 13 12 11 39 39 H 1.08001 * 120.49433 * 359.96857 * 16 9 7 40 40 H 0.96995 * 119.99689 * 265.00356 * 17 2 1 41 41 H 0.96997 * 120.00805 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1257 -1.9920 0.5612 7 6 4.2675 0.1492 1.7156 8 8 3.7505 1.0829 2.2956 9 6 5.7449 0.0825 1.5851 10 6 6.4149 0.8588 0.6152 11 6 7.7609 0.7831 0.5040 12 7 8.4853 -0.0229 1.3207 13 6 9.9420 -0.0745 1.1741 14 6 7.8877 -0.7800 2.2596 15 8 8.5592 -1.5007 2.9795 16 6 6.4869 -0.7413 2.4117 17 7 2.0183 -0.6906 -1.1962 18 6 2.1492 -0.0075 -2.3757 19 1 1.8920 1.0403 -2.4243 20 6 2.6113 -0.6619 -3.5092 21 7 2.9243 -1.9390 -3.4502 22 14 2.7891 0.2698 -5.1185 23 1 3.7445 1.3922 -4.9377 24 1 3.2982 -0.6487 -6.1685 25 1 1.4666 0.8066 -5.5284 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6053 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 4.3682 -2.7308 1.3250 32 1 3.4361 -2.4289 -0.1610 33 1 5.0384 -1.6834 0.0515 34 1 5.8536 1.5086 -0.0399 35 1 8.2670 1.3762 -0.2433 36 1 10.2079 -0.8533 0.4593 37 1 10.3053 0.8881 0.8143 38 1 10.3967 -0.2968 2.1394 39 1 6.0003 -1.3459 3.1627 40 1 2.2490 -1.6318 -1.1526 41 1 3.2476 -2.3964 -4.2421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755594699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:04 Heat of formation + Delta-G solvation = -11.829062 kcal Electronic energy + Delta-G solvation = -24041.761456 eV Core-core repulsion = 20537.240727 eV Total energy + Delta-G solvation = -3504.520729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39646 -39.59392 -36.95029 -36.37549 -34.72109 -34.05229 -32.04703 -30.05141 -28.94270 -28.16454 -26.84276 -25.82689 -24.16626 -23.65455 -22.89644 -20.35180 -19.26242 -17.58124 -17.55354 -17.30486 -16.98078 -16.26970 -15.95604 -15.45367 -15.06450 -14.58730 -14.18820 -14.10398 -13.67224 -13.36176 -13.34538 -12.97364 -12.84697 -12.51585 -12.29851 -12.14984 -11.90893 -11.85093 -11.80350 -11.42250 -11.31450 -10.88050 -10.74829 -10.46259 -10.40625 -10.13737 -10.06005 -9.69469 -9.51864 -8.96991 -8.26320 -8.06373 -6.99576 -5.81920 -3.09024 0.58439 1.74680 2.50739 2.72766 3.21775 3.38933 3.44584 3.45046 3.55149 4.40656 4.46086 4.54941 4.57386 4.98477 5.05730 5.10086 5.24643 5.38094 5.41140 5.50636 5.52639 5.62598 5.70778 5.84592 5.85725 5.91278 6.09084 6.18130 6.23875 6.27506 6.32270 6.33377 6.65362 6.73608 6.82241 6.92178 7.10045 7.59904 7.67584 7.90379 8.30499 8.37739 9.48588 10.04546 10.40405 11.40922 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.005137 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.384260 B = 5449.628266 C = 6654.816556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.052 0.948 4 C 0.108 3.892 5 N -0.583 5.583 6 C 0.083 3.917 7 C 0.557 3.443 8 O -0.535 6.535 9 C 0.002 3.998 10 C -0.193 4.193 11 C 0.131 3.869 12 N -0.498 5.498 13 C 0.059 3.941 14 C 0.517 3.483 15 O -0.555 6.555 16 C -0.215 4.215 17 N -0.720 5.720 18 C -0.232 4.232 19 H 0.068 0.932 20 C -0.012 4.012 21 N -0.935 5.935 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.168 0.832 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.152 0.848 40 H 0.381 0.619 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.156 2.868 8.194 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.070 0.930 4 C -0.015 4.015 5 N -0.313 5.313 6 C -0.060 4.060 7 C 0.343 3.657 8 O -0.413 6.413 9 C -0.005 4.005 10 C -0.216 4.216 11 C 0.005 3.995 12 N -0.209 5.209 13 C -0.083 4.083 14 C 0.319 3.681 15 O -0.438 6.438 16 C -0.238 4.238 17 N -0.364 5.364 18 C -0.363 4.363 19 H 0.086 0.914 20 C -0.208 4.208 21 N -0.584 5.584 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.171 0.829 35 H 0.185 0.815 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.169 0.831 40 H 0.217 0.783 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.360 2.980 8.806 13.193 hybrid contribution 0.064 0.172 -1.298 1.311 sum 9.424 3.152 7.508 12.455 Atomic orbital electron populations 1.22369 0.98658 1.00925 1.00349 1.20662 0.92098 0.96223 0.86645 0.93038 1.21947 0.78210 1.01622 0.99731 1.47575 1.06824 1.20884 1.55977 1.21895 0.99856 0.86865 0.97358 1.18336 0.85963 0.82437 0.78960 1.90771 1.73915 1.33457 1.43172 1.20479 0.94275 0.92499 0.93264 1.20604 0.92834 1.05484 1.02694 1.21838 0.92496 0.92178 0.93034 1.45350 1.09659 1.36150 1.29783 1.22164 0.77652 1.03545 1.04889 1.16976 0.89156 0.81213 0.80743 1.90934 1.65947 1.41447 1.45496 1.22433 0.92242 1.04414 1.04686 1.42463 1.78205 1.10440 1.05242 1.19174 1.36067 0.93797 0.87279 0.91433 1.24658 1.02408 0.95939 0.97798 1.69613 1.51298 1.08552 1.28955 0.86321 0.77787 0.78573 0.83815 1.21442 1.21786 1.21377 0.92504 0.93414 0.94243 0.90557 0.89850 0.93285 0.88895 0.91352 0.82853 0.81451 0.90483 0.89635 0.88823 0.83069 0.78345 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.15 3.00 3.20 -67.93 -0.22 2.78 16 3 H 0.05 1.10 8.08 -51.93 -0.42 0.69 16 4 C 0.11 1.78 5.05 -4.04 -0.02 1.76 16 5 N -0.58 -9.74 2.73 -182.46 -0.50 -10.24 16 6 C 0.08 1.31 9.57 59.85 0.57 1.88 16 7 C 0.56 9.68 7.16 -12.05 -0.09 9.59 16 8 O -0.54 -10.72 16.66 5.39 0.09 -10.63 16 9 C 0.00 0.03 3.93 -104.56 -0.41 -0.38 16 10 C -0.19 -2.50 9.78 -39.54 -0.39 -2.89 16 11 C 0.13 1.31 10.25 -16.90 -0.17 1.14 16 12 N -0.50 -5.61 2.98 -127.13 -0.38 -5.99 16 13 C 0.06 0.46 10.34 59.85 0.62 1.07 16 14 C 0.52 7.58 7.42 -15.31 -0.11 7.47 16 15 O -0.55 -9.65 16.62 4.92 0.08 -9.57 16 16 C -0.22 -3.12 9.57 -38.53 -0.37 -3.49 16 17 N -0.72 -16.67 4.57 -53.42 -0.24 -16.91 16 18 C -0.23 -6.08 9.93 -15.06 -0.15 -6.23 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.94 -26.33 13.06 55.49 0.72 -25.61 16 22 Si 0.90 21.52 29.55 -169.99 -5.02 16.49 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.08 1.34 7.37 -51.93 -0.38 0.95 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.64 5.76 -51.93 -0.30 1.34 16 33 H 0.07 1.11 7.02 -51.93 -0.36 0.75 16 34 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.17 0.99 8.03 -52.48 -0.42 0.57 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.38 8.00 -51.93 -0.42 -0.03 16 38 H 0.09 0.81 7.37 -51.93 -0.38 0.43 16 39 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.38 9.10 5.40 -40.82 -0.22 8.88 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -33.36 346.75 -6.33 -39.69 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.83 Total: 7.75 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -0.48 Total: 9.79 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.40 Total: -58.75 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.36 -6.33 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755594699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.861 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds