Wall clock time and date at job start Tue Mar 31 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46837 * 2 1 4 4 C 1.53001 * 109.46662 * 120.00034 * 2 1 3 5 5 N 1.46503 * 109.46522 * 175.00185 * 4 2 1 6 6 C 1.46501 * 119.99520 * 269.99664 * 5 4 2 7 7 C 1.34778 * 120.00315 * 90.00004 * 5 4 2 8 8 O 1.21470 * 119.99603 * 3.63361 * 7 5 4 9 9 C 1.48459 * 119.99866 * 183.63001 * 7 5 4 10 10 C 1.41149 * 120.53532 * 101.34041 * 9 7 5 11 11 C 1.35267 * 119.86754 * 180.29739 * 10 9 7 12 12 N 1.35695 * 120.99986 * 359.45979 * 11 10 9 13 13 C 1.46500 * 119.44285 * 180.25003 * 12 11 10 14 14 C 1.34605 * 121.12092 * 0.52154 * 12 11 10 15 15 O 1.22004 * 119.96593 * 179.74221 * 14 12 11 16 16 C 1.38291 * 120.54044 * 281.35520 * 9 7 5 17 17 N 1.46501 * 109.47054 * 239.99879 * 2 1 3 18 18 C 1.36935 * 119.99626 * 85.00318 * 17 2 1 19 19 H 1.07999 * 120.00511 * 359.97438 * 18 17 2 20 20 C 1.38812 * 119.99788 * 180.02562 * 18 17 2 21 21 N 1.31620 * 120.00198 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00022 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47260 * 60.00092 * 22 20 18 24 24 H 1.48501 * 109.46835 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47139 * 299.99852 * 22 20 18 26 26 H 1.09001 * 109.46797 * 59.99836 * 1 2 3 27 27 H 1.08997 * 109.47320 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47345 * 300.00025 * 1 2 3 29 29 H 1.08995 * 109.47637 * 55.00026 * 4 2 1 30 30 H 1.09003 * 109.47337 * 294.99677 * 4 2 1 31 31 H 1.08999 * 109.47111 * 264.68340 * 6 5 4 32 32 H 1.08994 * 109.47575 * 24.68662 * 6 5 4 33 33 H 1.08998 * 109.46841 * 144.69283 * 6 5 4 34 34 H 1.07999 * 120.06451 * 0.02562 * 10 9 7 35 35 H 1.08004 * 119.49851 * 179.72025 * 11 10 9 36 36 H 1.09004 * 109.46745 * 270.27246 * 13 12 11 37 37 H 1.08997 * 109.47316 * 30.26516 * 13 12 11 38 38 H 1.08993 * 109.47489 * 150.27152 * 13 12 11 39 39 H 1.08001 * 120.49433 * 359.96857 * 16 9 7 40 40 H 0.96995 * 119.99689 * 265.00356 * 17 2 1 41 41 H 0.96997 * 120.00805 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1257 -1.9920 0.5612 7 6 4.2675 0.1492 1.7156 8 8 3.7505 1.0829 2.2956 9 6 5.7449 0.0825 1.5851 10 6 6.4149 0.8588 0.6152 11 6 7.7609 0.7831 0.5040 12 7 8.4853 -0.0229 1.3207 13 6 9.9420 -0.0745 1.1741 14 6 7.8877 -0.7800 2.2596 15 8 8.5592 -1.5007 2.9795 16 6 6.4869 -0.7413 2.4117 17 7 2.0183 -0.6906 -1.1962 18 6 2.1492 -0.0075 -2.3757 19 1 1.8920 1.0403 -2.4243 20 6 2.6113 -0.6619 -3.5092 21 7 2.9243 -1.9390 -3.4502 22 14 2.7891 0.2698 -5.1185 23 1 3.7445 1.3922 -4.9377 24 1 3.2982 -0.6487 -6.1685 25 1 1.4666 0.8066 -5.5284 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6053 -1.7198 1.2952 30 1 1.7516 -0.1583 2.1370 31 1 4.3682 -2.7308 1.3250 32 1 3.4361 -2.4289 -0.1610 33 1 5.0384 -1.6834 0.0515 34 1 5.8536 1.5086 -0.0399 35 1 8.2670 1.3762 -0.2433 36 1 10.2079 -0.8533 0.4593 37 1 10.3053 0.8881 0.8143 38 1 10.3967 -0.2968 2.1394 39 1 6.0003 -1.3459 3.1627 40 1 2.2490 -1.6318 -1.1526 41 1 3.2476 -2.3964 -4.2421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755594699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:03 Heat of formation + Delta-G solvation = -33.684461 kcal Electronic energy + Delta-G solvation = -24042.709177 eV Core-core repulsion = 20537.240727 eV Total energy + Delta-G solvation = -3505.468450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.44154 -40.94124 -38.15352 -37.84723 -36.00534 -35.41829 -33.84844 -31.09027 -30.69184 -29.14436 -28.18797 -27.07085 -25.73131 -24.97086 -24.06860 -21.86981 -20.60386 -19.24717 -18.65560 -18.59532 -18.10510 -17.54417 -17.01855 -16.68643 -16.58095 -16.23033 -15.63445 -15.28871 -15.17765 -14.88523 -14.23072 -14.14608 -13.99763 -13.78734 -13.69706 -13.42471 -13.29577 -13.08747 -12.90947 -12.85916 -12.74702 -12.65522 -12.47823 -12.19418 -11.87197 -11.69400 -11.57752 -11.09614 -10.94098 -10.79745 -9.67935 -9.09027 -8.92278 -7.87848 -5.13741 -0.44940 0.69412 1.35382 1.50081 1.51723 1.57397 1.63746 1.94844 2.47565 2.60402 3.21268 3.46217 3.67195 3.71438 3.88983 4.07998 4.08582 4.15619 4.23957 4.40952 4.43042 4.46667 4.59052 4.61873 4.71253 4.74047 4.81248 4.85237 4.91988 4.95689 5.13547 5.16189 5.27264 5.33817 5.41408 5.57083 5.63088 5.92958 6.24596 6.35324 6.83818 6.94042 7.42246 8.14630 8.42763 9.34514 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.005137 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.384260 B = 5449.628266 C = 6654.816556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.028 0.972 4 C 0.112 3.888 5 N -0.584 5.584 6 C 0.091 3.909 7 C 0.553 3.447 8 O -0.568 6.568 9 C 0.000 4.000 10 C -0.225 4.225 11 C 0.167 3.833 12 N -0.492 5.492 13 C 0.051 3.949 14 C 0.508 3.492 15 O -0.592 6.592 16 C -0.231 4.231 17 N -0.725 5.725 18 C -0.232 4.232 19 H 0.063 0.937 20 C -0.063 4.063 21 N -0.961 5.961 22 Si 0.960 3.040 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.287 1.287 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.151 0.849 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.377 0.623 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 3.729 7.604 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.046 0.954 4 C -0.011 4.011 5 N -0.313 5.313 6 C -0.052 4.052 7 C 0.341 3.659 8 O -0.448 6.448 9 C -0.007 4.007 10 C -0.247 4.247 11 C 0.040 3.960 12 N -0.200 5.200 13 C -0.089 4.089 14 C 0.312 3.688 15 O -0.479 6.479 16 C -0.253 4.253 17 N -0.368 5.368 18 C -0.364 4.364 19 H 0.081 0.919 20 C -0.256 4.256 21 N -0.612 5.612 22 Si 0.790 3.210 23 H -0.206 1.206 24 H -0.223 1.223 25 H -0.213 1.213 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.239 0.761 36 H 0.107 0.893 37 H 0.147 0.853 38 H 0.099 0.901 39 H 0.165 0.835 40 H 0.212 0.788 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.490 3.861 8.223 13.877 hybrid contribution -0.271 -0.027 -1.114 1.147 sum 10.218 3.834 7.109 13.025 Atomic orbital electron populations 1.22220 0.96766 1.01515 1.00835 1.20773 0.93348 0.94917 0.86587 0.95428 1.21915 0.78320 1.02511 0.98356 1.47672 1.06989 1.21027 1.55588 1.21843 0.98810 0.86889 0.97639 1.18743 0.87106 0.81841 0.78231 1.90738 1.74826 1.34616 1.44657 1.20401 0.92815 0.93320 0.94210 1.20703 0.94349 1.06481 1.03200 1.22524 0.91538 0.90068 0.91906 1.45527 1.11433 1.34658 1.28424 1.22510 0.75001 1.06513 1.04833 1.16990 0.89031 0.81491 0.81297 1.90908 1.66536 1.43256 1.47162 1.22336 0.92563 1.05231 1.05213 1.42540 1.78427 1.10264 1.05559 1.19399 1.34883 0.93738 0.88430 0.91909 1.25274 1.03120 0.96736 1.00434 1.69742 1.52572 1.09639 1.29214 0.85424 0.77636 0.77524 0.80413 1.20599 1.22262 1.21340 0.94358 0.92731 0.91391 0.88498 0.89054 0.90649 0.90703 0.92084 0.83166 0.76103 0.89312 0.85296 0.90062 0.83452 0.78791 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.49 71.98 0.68 -4.51 16 2 C 0.15 5.92 3.20 44.99 0.14 6.06 16 3 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 4 C 0.11 3.62 5.05 86.38 0.44 4.06 16 5 N -0.58 -19.46 2.73 -849.50 -2.32 -21.78 16 6 C 0.09 2.84 9.57 127.77 1.22 4.06 16 7 C 0.55 19.41 7.16 86.97 0.62 20.03 16 8 O -0.57 -23.07 16.66 -3.62 -0.06 -23.14 16 9 C 0.00 0.00 3.93 -19.82 -0.08 -0.08 16 10 C -0.22 -5.54 9.78 22.30 0.22 -5.32 16 11 C 0.17 2.80 10.25 83.41 0.86 3.65 16 12 N -0.49 -9.86 2.98 -674.33 -2.01 -11.87 16 13 C 0.05 0.62 10.34 127.77 1.32 1.94 16 14 C 0.51 14.63 7.42 84.93 0.63 15.26 16 15 O -0.59 -20.67 16.62 -5.33 -0.09 -20.76 16 16 C -0.23 -6.74 9.57 22.95 0.22 -6.52 16 17 N -0.72 -33.63 4.57 -322.94 -1.47 -35.11 16 18 C -0.23 -12.21 9.93 84.03 0.83 -11.37 16 19 H 0.06 3.30 7.83 -2.91 -0.02 3.28 16 20 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 21 N -0.96 -54.26 13.06 21.65 0.28 -53.98 16 22 Si 0.96 43.98 29.55 68.60 2.03 46.01 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.10 2.74 8.07 -2.39 -0.02 2.73 16 30 H 0.09 2.85 7.37 -2.39 -0.02 2.83 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 2.64 5.76 -2.39 -0.01 2.63 16 33 H 0.06 1.99 7.02 -2.39 -0.02 1.97 16 34 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.22 1.31 8.03 -2.91 -0.02 1.29 16 36 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.13 0.47 8.00 -2.39 -0.02 0.45 16 38 H 0.08 1.26 7.37 -2.39 -0.02 1.24 16 39 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 40 H 0.38 18.11 5.40 -92.71 -0.50 17.61 16 41 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -73.51 346.75 4.47 -69.04 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.54 Total: 27.23 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 7.58 Total: 24.35 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.52 Total: -122.73 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.15 Total: -43.90 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.51 4.47 -69.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755594699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.355 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds