Wall clock time and date at job start Tue Mar 31 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47297 * 239.99698 * 2 1 3 5 5 N 1.46496 * 109.46926 * 185.00236 * 4 2 1 6 6 C 1.46501 * 119.99577 * 269.99906 * 5 4 2 7 7 C 1.34775 * 120.00423 * 90.00365 * 5 4 2 8 8 O 1.21479 * 119.99627 * 5.22092 * 7 5 4 9 9 C 1.48451 * 120.00513 * 185.21983 * 7 5 4 10 10 C 1.41152 * 120.53951 * 99.99201 * 9 7 5 11 11 C 1.35267 * 119.87018 * 180.30206 * 10 9 7 12 12 N 1.35699 * 120.99815 * 359.46057 * 11 10 9 13 13 C 1.46497 * 119.44055 * 180.24312 * 12 11 10 14 14 C 1.34596 * 121.11719 * 0.53178 * 12 11 10 15 15 O 1.22019 * 119.96088 * 179.73914 * 14 12 11 16 16 C 1.38292 * 120.54074 * 280.02389 * 9 7 5 17 17 N 1.46503 * 109.46973 * 119.99891 * 2 1 3 18 18 C 1.36937 * 119.99740 * 275.00036 * 17 2 1 19 19 H 1.07996 * 120.00387 * 0.02562 * 18 17 2 20 20 C 1.38815 * 119.99694 * 180.02562 * 18 17 2 21 21 N 1.31614 * 120.00014 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99741 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47575 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47423 * 120.00135 * 22 20 18 25 25 H 1.48502 * 109.46916 * 239.99617 * 22 20 18 26 26 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47224 * 300.00450 * 1 2 3 28 28 H 1.08995 * 109.47241 * 60.00147 * 1 2 3 29 29 H 1.08997 * 109.46758 * 64.99978 * 4 2 1 30 30 H 1.09003 * 109.47286 * 305.00075 * 4 2 1 31 31 H 1.08999 * 109.47111 * 274.91504 * 6 5 4 32 32 H 1.08994 * 109.47575 * 34.91826 * 6 5 4 33 33 H 1.08998 * 109.46841 * 154.92447 * 6 5 4 34 34 H 1.08002 * 120.06188 * 0.03598 * 10 9 7 35 35 H 1.07998 * 119.49752 * 179.73076 * 11 10 9 36 36 H 1.09004 * 109.47594 * 270.28365 * 13 12 11 37 37 H 1.09009 * 109.46933 * 30.27861 * 13 12 11 38 38 H 1.08994 * 109.47679 * 150.27893 * 13 12 11 39 39 H 1.08004 * 120.49507 * 359.95336 * 16 9 7 40 40 H 0.96996 * 119.99962 * 94.99867 * 17 2 1 41 41 H 0.97004 * 119.99825 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3343 0.2340 -1.7611 7 6 4.0758 -1.8987 -0.6114 8 8 3.3881 -2.8218 -0.2234 9 6 5.5503 -1.9517 -0.4478 10 6 6.1458 -1.6419 0.7939 11 6 7.4912 -1.6887 0.9262 12 7 8.2842 -2.0408 -0.1171 13 6 9.7370 -2.0854 0.0656 14 6 7.7589 -2.3443 -1.3186 15 8 8.4920 -2.6537 -2.2437 16 6 6.3629 -2.3048 -1.5096 17 7 2.0183 -0.6906 1.1962 18 6 2.1491 -0.0074 2.3758 19 1 1.8919 1.0403 2.4244 20 6 2.6123 -0.6616 3.5091 21 7 2.9253 -1.9387 3.4500 22 14 2.7899 0.2701 5.1183 23 1 2.3751 1.6823 4.9211 24 1 1.9297 -0.3592 6.1524 25 1 4.2069 0.2281 5.5607 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 1.7517 -0.1584 -2.1369 30 1 1.6055 -1.7199 -1.2951 31 1 4.4701 0.0551 -2.8277 32 1 3.8479 1.1982 -1.6135 33 1 5.3058 0.2377 -1.2668 34 1 5.5287 -1.3639 1.6355 35 1 7.9407 -1.4463 1.8778 36 1 10.1627 -1.1092 -0.1669 37 1 9.9653 -2.3443 1.0996 38 1 10.1641 -2.8358 -0.5996 39 1 5.9343 -2.5471 -2.4709 40 1 2.2490 -1.6317 1.1527 41 1 3.2493 -2.3957 4.2419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755594700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:06 Heat of formation + Delta-G solvation = -11.077175 kcal Electronic energy + Delta-G solvation = -24413.785614 eV Core-core repulsion = 20909.297489 eV Total energy + Delta-G solvation = -3504.488125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24699 -39.45713 -36.79271 -36.04257 -34.66860 -34.05406 -31.93508 -29.86537 -28.75376 -28.01759 -27.01206 -25.69651 -23.97176 -23.57460 -22.83595 -20.14019 -19.13955 -17.58174 -17.37103 -17.19015 -16.73995 -16.13728 -15.81307 -15.35374 -14.96825 -14.59314 -14.05087 -13.80589 -13.69155 -13.26233 -13.10883 -12.88246 -12.71710 -12.43988 -12.30036 -12.23605 -11.93628 -11.67559 -11.65542 -11.42412 -11.24336 -10.87048 -10.68385 -10.39708 -10.27452 -10.02369 -9.92113 -9.59535 -9.29940 -8.89067 -8.17833 -7.89915 -6.87804 -5.67542 -2.97835 0.73177 1.94285 2.65717 2.98121 3.33610 3.40687 3.48232 3.49754 3.68766 4.54886 4.61028 4.64506 4.71031 5.08860 5.18525 5.26606 5.31826 5.41712 5.44774 5.50011 5.52762 5.58718 5.78265 5.84342 5.85914 6.00888 6.05160 6.14360 6.25957 6.36768 6.43087 6.60634 6.63994 6.78367 6.90264 7.08719 7.11661 7.70138 7.74101 8.03668 8.47565 8.57970 9.60665 10.22380 10.60555 11.52303 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.005937 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.980554 B = 4715.420786 C = 6142.029081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.045 0.955 4 C 0.108 3.892 5 N -0.600 5.600 6 C 0.083 3.917 7 C 0.566 3.434 8 O -0.503 6.503 9 C 0.009 3.991 10 C -0.182 4.182 11 C 0.122 3.878 12 N -0.498 5.498 13 C 0.060 3.940 14 C 0.516 3.484 15 O -0.562 6.562 16 C -0.226 4.226 17 N -0.722 5.722 18 C -0.236 4.236 19 H 0.066 0.934 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.897 3.103 23 H -0.283 1.283 24 H -0.293 1.293 25 H -0.294 1.294 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.396 0.604 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 4.203 -8.635 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.063 0.937 4 C -0.015 4.015 5 N -0.333 5.333 6 C -0.060 4.060 7 C 0.352 3.648 8 O -0.376 6.376 9 C 0.002 3.998 10 C -0.205 4.205 11 C -0.004 4.004 12 N -0.210 5.210 13 C -0.082 4.082 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.248 4.248 17 N -0.367 5.367 18 C -0.367 4.367 19 H 0.084 0.916 20 C -0.209 4.209 21 N -0.569 5.569 22 Si 0.729 3.271 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.221 1.221 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.167 0.833 40 H 0.233 0.767 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.134 3.605 -8.877 13.237 hybrid contribution 0.034 0.375 1.231 1.287 sum 9.168 3.980 -7.646 12.584 Atomic orbital electron populations 1.22401 0.98941 1.01073 1.00016 1.20654 0.92096 0.95620 0.87393 0.93681 1.21904 0.78624 1.02429 0.98496 1.47489 1.06959 1.20618 1.58193 1.21726 0.95547 0.91077 0.97698 1.18186 0.86647 0.82612 0.77367 1.90827 1.62951 1.36617 1.47241 1.20555 0.94120 0.91379 0.93756 1.20927 0.93269 1.07437 0.98819 1.21879 0.91431 0.95146 0.91938 1.45335 1.09180 1.55410 1.11055 1.22131 0.78106 1.04225 1.03701 1.16962 0.89642 0.79908 0.81638 1.90919 1.62027 1.51959 1.39697 1.22418 0.91561 1.10430 1.00421 1.42678 1.77705 1.11567 1.04780 1.19249 1.36211 0.93683 0.87596 0.91602 1.24716 1.02734 0.95880 0.97561 1.69752 1.50656 1.08216 1.28238 0.86269 0.77166 0.78818 0.84842 1.20814 1.22052 1.22099 0.93307 0.92590 0.94536 0.90738 0.89967 0.92882 0.91080 0.91340 0.81536 0.81593 0.90736 0.89692 0.88929 0.83294 0.76653 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.54 16 2 C 0.15 2.98 3.20 -67.93 -0.22 2.76 16 3 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 4 C 0.11 1.79 5.18 -4.05 -0.02 1.77 16 5 N -0.60 -9.92 2.77 -182.47 -0.51 -10.43 16 6 C 0.08 1.04 10.24 59.85 0.61 1.66 16 7 C 0.57 10.96 6.30 -12.05 -0.08 10.88 16 8 O -0.50 -11.89 14.73 5.38 0.08 -11.81 16 9 C 0.01 0.16 3.80 -104.56 -0.40 -0.24 16 10 C -0.18 -2.91 9.78 -39.53 -0.39 -3.29 16 11 C 0.12 1.49 10.25 -16.90 -0.17 1.31 16 12 N -0.50 -6.27 2.98 -127.13 -0.38 -6.65 16 13 C 0.06 0.53 10.34 59.85 0.62 1.14 16 14 C 0.52 8.09 7.42 -15.31 -0.11 7.97 16 15 O -0.56 -10.19 16.62 4.90 0.08 -10.11 16 16 C -0.23 -3.52 9.51 -38.53 -0.37 -3.89 16 17 N -0.72 -17.90 4.52 -53.42 -0.24 -18.14 16 18 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.92 -27.11 13.06 55.49 0.72 -26.38 16 22 Si 0.90 21.68 29.55 -169.99 -5.02 16.65 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.08 1.49 7.36 -51.93 -0.38 1.10 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.07 0.87 6.53 -51.93 -0.34 0.53 16 34 H 0.17 3.17 8.06 -52.49 -0.42 2.75 16 35 H 0.17 1.42 8.02 -52.49 -0.42 1.00 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.50 8.01 -51.92 -0.42 0.09 16 38 H 0.09 0.90 7.37 -51.93 -0.38 0.52 16 39 H 0.15 2.19 8.06 -52.48 -0.42 1.77 16 40 H 0.40 10.81 5.25 -40.82 -0.21 10.59 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -35.04 346.25 -6.38 -41.42 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.92 Total: 9.65 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -0.41 Total: 10.58 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.40 Total: -61.60 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.16 Total: -21.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.04 -6.38 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755594700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.340 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds