Wall clock time and date at job start Tue Mar 31 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47297 * 239.99698 * 2 1 3 5 5 N 1.46496 * 109.46926 * 185.00236 * 4 2 1 6 6 C 1.46501 * 119.99577 * 269.99906 * 5 4 2 7 7 C 1.34775 * 120.00423 * 90.00365 * 5 4 2 8 8 O 1.21479 * 119.99627 * 5.22092 * 7 5 4 9 9 C 1.48451 * 120.00513 * 185.21983 * 7 5 4 10 10 C 1.41152 * 120.53951 * 99.99201 * 9 7 5 11 11 C 1.35267 * 119.87018 * 180.30206 * 10 9 7 12 12 N 1.35699 * 120.99815 * 359.46057 * 11 10 9 13 13 C 1.46497 * 119.44055 * 180.24312 * 12 11 10 14 14 C 1.34596 * 121.11719 * 0.53178 * 12 11 10 15 15 O 1.22019 * 119.96088 * 179.73914 * 14 12 11 16 16 C 1.38292 * 120.54074 * 280.02389 * 9 7 5 17 17 N 1.46503 * 109.46973 * 119.99891 * 2 1 3 18 18 C 1.36937 * 119.99740 * 275.00036 * 17 2 1 19 19 H 1.07996 * 120.00387 * 0.02562 * 18 17 2 20 20 C 1.38815 * 119.99694 * 180.02562 * 18 17 2 21 21 N 1.31614 * 120.00014 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99741 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47575 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47423 * 120.00135 * 22 20 18 25 25 H 1.48502 * 109.46916 * 239.99617 * 22 20 18 26 26 H 1.09003 * 109.46964 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47224 * 300.00450 * 1 2 3 28 28 H 1.08995 * 109.47241 * 60.00147 * 1 2 3 29 29 H 1.08997 * 109.46758 * 64.99978 * 4 2 1 30 30 H 1.09003 * 109.47286 * 305.00075 * 4 2 1 31 31 H 1.08999 * 109.47111 * 274.91504 * 6 5 4 32 32 H 1.08994 * 109.47575 * 34.91826 * 6 5 4 33 33 H 1.08998 * 109.46841 * 154.92447 * 6 5 4 34 34 H 1.08002 * 120.06188 * 0.03598 * 10 9 7 35 35 H 1.07998 * 119.49752 * 179.73076 * 11 10 9 36 36 H 1.09004 * 109.47594 * 270.28365 * 13 12 11 37 37 H 1.09009 * 109.46933 * 30.27861 * 13 12 11 38 38 H 1.08994 * 109.47679 * 150.27893 * 13 12 11 39 39 H 1.08004 * 120.49507 * 359.95336 * 16 9 7 40 40 H 0.96996 * 119.99962 * 94.99867 * 17 2 1 41 41 H 0.97004 * 119.99825 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3343 0.2340 -1.7611 7 6 4.0758 -1.8987 -0.6114 8 8 3.3881 -2.8218 -0.2234 9 6 5.5503 -1.9517 -0.4478 10 6 6.1458 -1.6419 0.7939 11 6 7.4912 -1.6887 0.9262 12 7 8.2842 -2.0408 -0.1171 13 6 9.7370 -2.0854 0.0656 14 6 7.7589 -2.3443 -1.3186 15 8 8.4920 -2.6537 -2.2437 16 6 6.3629 -2.3048 -1.5096 17 7 2.0183 -0.6906 1.1962 18 6 2.1491 -0.0074 2.3758 19 1 1.8919 1.0403 2.4244 20 6 2.6123 -0.6616 3.5091 21 7 2.9253 -1.9387 3.4500 22 14 2.7899 0.2701 5.1183 23 1 2.3751 1.6823 4.9211 24 1 1.9297 -0.3592 6.1524 25 1 4.2069 0.2281 5.5607 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 1.7517 -0.1584 -2.1369 30 1 1.6055 -1.7199 -1.2951 31 1 4.4701 0.0551 -2.8277 32 1 3.8479 1.1982 -1.6135 33 1 5.3058 0.2377 -1.2668 34 1 5.5287 -1.3639 1.6355 35 1 7.9407 -1.4463 1.8778 36 1 10.1627 -1.1092 -0.1669 37 1 9.9653 -2.3443 1.0996 38 1 10.1641 -2.8358 -0.5996 39 1 5.9343 -2.5471 -2.4709 40 1 2.2490 -1.6317 1.1527 41 1 3.2493 -2.3957 4.2419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755594700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:05 Heat of formation + Delta-G solvation = -35.256757 kcal Electronic energy + Delta-G solvation = -24414.834120 eV Core-core repulsion = 20909.297489 eV Total energy + Delta-G solvation = -3505.536630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42082 -40.86471 -38.05988 -37.59518 -36.10275 -35.40491 -33.76918 -31.05438 -30.55600 -29.09783 -28.19455 -26.91775 -25.68662 -24.97639 -24.07593 -21.66205 -20.52916 -19.27833 -18.58251 -18.49953 -18.02205 -17.47277 -16.97996 -16.80693 -16.42302 -16.20353 -15.52581 -15.22405 -15.15204 -14.58093 -14.21180 -14.12883 -14.02632 -13.78516 -13.57495 -13.39165 -13.32785 -12.99249 -12.90828 -12.84818 -12.76847 -12.64983 -12.37546 -12.08779 -11.82479 -11.61730 -11.53420 -11.05426 -10.91015 -10.70083 -9.55457 -9.07505 -8.87084 -7.77742 -5.08207 -0.43356 0.71584 1.48186 1.51316 1.52568 1.59679 1.64995 2.05986 2.48432 2.62698 3.33544 3.51039 3.68985 3.72418 3.99397 4.10635 4.16869 4.21466 4.27533 4.43838 4.47637 4.50159 4.61417 4.65644 4.74430 4.76994 4.81207 4.89905 4.93063 4.98029 5.11331 5.25757 5.29434 5.42004 5.47815 5.60277 5.70088 5.94424 6.35070 6.40911 6.85221 7.14742 7.47504 8.28397 8.52466 9.43027 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.005937 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.980554 B = 4715.420786 C = 6142.029081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.053 0.947 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.078 3.922 7 C 0.557 3.443 8 O -0.560 6.560 9 C 0.006 3.994 10 C -0.216 4.216 11 C 0.165 3.835 12 N -0.490 5.490 13 C 0.052 3.948 14 C 0.510 3.490 15 O -0.591 6.591 16 C -0.231 4.231 17 N -0.737 5.737 18 C -0.233 4.233 19 H 0.070 0.930 20 C -0.070 4.070 21 N -0.957 5.957 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.304 1.304 25 H -0.289 1.289 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.214 0.786 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.382 0.618 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.436 6.370 -8.998 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.071 0.929 4 C -0.011 4.011 5 N -0.327 5.327 6 C -0.064 4.064 7 C 0.344 3.656 8 O -0.438 6.438 9 C -0.002 4.002 10 C -0.239 4.239 11 C 0.037 3.963 12 N -0.199 5.199 13 C -0.088 4.088 14 C 0.314 3.686 15 O -0.478 6.478 16 C -0.253 4.253 17 N -0.381 5.381 18 C -0.365 4.365 19 H 0.088 0.912 20 C -0.263 4.263 21 N -0.608 5.608 22 Si 0.792 3.208 23 H -0.195 1.195 24 H -0.232 1.232 25 H -0.216 1.216 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.142 0.858 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.231 0.769 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.169 0.831 40 H 0.217 0.783 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.598 5.860 -9.285 15.260 hybrid contribution -0.401 -0.229 1.302 1.382 sum 10.196 5.631 -7.983 14.121 Atomic orbital electron populations 1.22252 0.97415 1.00544 1.01245 1.20960 0.93105 0.95684 0.86683 0.92948 1.21917 0.78598 1.01653 0.98942 1.47639 1.07452 1.20627 1.57024 1.21991 0.94929 0.90493 0.98997 1.18687 0.87630 0.82571 0.76688 1.90783 1.64401 1.38816 1.49842 1.20406 0.92852 0.92312 0.94597 1.20638 0.94773 1.10903 0.97589 1.22344 0.90023 0.90945 0.92957 1.45490 1.11076 1.53299 1.10023 1.22508 0.75122 1.05259 1.05915 1.16943 0.89355 0.79969 0.82337 1.90902 1.62502 1.53522 1.40841 1.22350 0.91774 1.10967 1.00239 1.42906 1.78084 1.11133 1.05967 1.19580 1.34579 0.93848 0.88531 0.91168 1.25428 1.03517 0.96651 1.00706 1.69943 1.52401 1.09878 1.28553 0.85245 0.76900 0.77988 0.80622 1.19523 1.23212 1.21560 0.94726 0.94434 0.90125 0.85814 0.92123 0.90107 0.89323 0.91671 0.84984 0.76900 0.88678 0.85939 0.89970 0.83147 0.78335 0.94553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.49 71.98 0.68 -4.60 16 2 C 0.15 5.52 3.20 44.99 0.14 5.66 16 3 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 4 C 0.11 3.57 5.18 86.38 0.45 4.02 16 5 N -0.60 -19.53 2.77 -849.53 -2.36 -21.89 16 6 C 0.08 1.81 10.24 127.77 1.31 3.12 16 7 C 0.56 22.37 6.30 86.97 0.55 22.92 16 8 O -0.56 -28.15 14.73 -3.65 -0.05 -28.21 16 9 C 0.01 0.20 3.80 -19.83 -0.08 0.13 16 10 C -0.22 -6.99 9.78 22.30 0.22 -6.77 16 11 C 0.16 3.64 10.25 83.41 0.86 4.50 16 12 N -0.49 -11.14 2.98 -674.32 -2.01 -13.16 16 13 C 0.05 0.72 10.34 127.77 1.32 2.04 16 14 C 0.51 15.54 7.42 84.93 0.63 16.17 16 15 O -0.59 -21.04 16.62 -5.38 -0.09 -21.13 16 16 C -0.23 -7.24 9.51 22.95 0.22 -7.03 16 17 N -0.74 -37.32 4.52 -322.93 -1.46 -38.78 16 18 C -0.23 -12.70 9.93 84.03 0.83 -11.87 16 19 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 21 N -0.96 -58.39 13.06 21.65 0.28 -58.11 16 22 Si 0.96 45.11 29.55 68.60 2.03 47.14 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.12 2.72 8.07 -2.39 -0.02 2.70 16 30 H 0.06 2.23 7.36 -2.39 -0.02 2.21 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 33 H 0.06 1.58 6.53 -2.39 -0.02 1.56 16 34 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 35 H 0.21 2.69 8.02 -2.91 -0.02 2.67 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 0.84 8.01 -2.38 -0.02 0.82 16 38 H 0.08 1.40 7.37 -2.39 -0.02 1.39 16 39 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.38 21.75 5.25 -92.71 -0.49 21.26 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -80.97 346.25 4.48 -76.48 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.55 Total: 32.85 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 7.60 Total: 24.80 kcal Atomic # 7 Polarization: -126.38 SS G_CDS: -5.55 Total: -131.93 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.14 Total: -49.34 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -80.97 4.48 -76.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755594700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.227 kcal (2) G-P(sol) polarization free energy of solvation -80.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds