Wall clock time and date at job start Tue Mar 31 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46490 * 120.00409 * 2 1 4 4 C 1.52995 * 109.47302 * 269.99897 * 3 2 1 5 5 H 1.09002 * 109.47653 * 59.99699 * 4 3 2 6 6 O 1.42908 * 109.46939 * 299.99905 * 4 3 2 7 7 C 1.53000 * 109.47394 * 180.02562 * 4 3 2 8 8 N 1.46503 * 109.47295 * 184.99803 * 7 4 3 9 9 C 1.36934 * 119.99928 * 179.97438 * 8 7 4 10 10 H 1.07993 * 120.00234 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99649 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00220 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99981 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47226 * 89.99797 * 13 11 9 15 15 H 1.48496 * 109.47584 * 209.99987 * 13 11 9 16 16 H 1.48507 * 109.47086 * 330.00079 * 13 11 9 17 17 C 1.34781 * 119.99370 * 179.97438 * 2 1 3 18 18 O 1.21777 * 119.99443 * 180.02562 * 17 2 1 19 19 C 1.41516 * 120.00044 * 0.02562 * 17 2 1 20 20 C 1.35622 * 119.99805 * 188.37984 * 19 17 2 21 21 C 1.41674 * 119.99580 * 32.33713 * 20 19 17 22 22 C 1.38285 * 126.25318 * 187.18380 * 21 20 19 23 23 C 1.39796 * 107.07478 * 180.02562 * 22 21 20 24 24 C 1.35508 * 107.90609 * 359.73566 * 23 22 21 25 25 N 1.35750 * 108.91162 * 0.43517 * 24 23 22 26 26 H 0.96999 * 125.68462 * 179.82625 * 25 24 23 27 27 H 1.08992 * 109.47709 * 270.00787 * 1 2 3 28 28 H 1.09008 * 109.46492 * 30.00019 * 1 2 3 29 29 H 1.09001 * 109.47287 * 149.99514 * 1 2 3 30 30 H 1.09011 * 109.47247 * 29.99762 * 3 2 1 31 31 H 1.08998 * 109.47470 * 149.99061 * 3 2 1 32 32 H 0.96705 * 113.99600 * 299.99762 * 6 4 3 33 33 H 1.09001 * 109.46920 * 304.99505 * 7 4 3 34 34 H 1.09001 * 109.47534 * 64.99543 * 7 4 3 35 35 H 0.96997 * 119.99778 * 359.97438 * 8 7 4 36 36 H 0.97002 * 119.99713 * 179.97438 * 12 11 9 37 37 H 1.08001 * 120.00212 * 8.38695 * 19 17 2 38 38 H 1.07997 * 120.00435 * 212.33907 * 20 19 17 39 39 H 1.07995 * 126.46743 * 0.04004 * 22 21 20 40 40 H 1.07996 * 126.04578 * 180.02562 * 23 22 21 41 41 H 1.08002 * 125.53943 * 180.25443 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7103 -1.4424 5 1 1.5003 1.8406 -1.9564 6 8 3.2250 0.7142 -2.1161 7 6 3.2183 3.0349 -1.4425 8 7 3.3584 3.5180 -2.8184 9 6 4.0127 4.6948 -3.0676 10 1 4.4259 5.2665 -2.2499 11 6 4.1459 5.1522 -4.3714 12 7 3.6436 4.4547 -5.3682 13 14 5.0391 6.7572 -4.7115 14 1 6.4835 6.4846 -4.9231 15 1 4.4717 7.3914 -5.9284 16 1 4.8725 7.6715 -3.5532 17 6 2.1388 -1.1673 0.0005 18 8 3.3566 -1.1673 0.0010 19 6 1.4311 -2.3928 0.0005 20 6 2.0982 -3.5611 0.1722 21 6 3.2566 -3.6021 0.9869 22 6 4.1105 -4.6789 1.1405 23 6 5.1134 -4.2837 2.0307 24 6 4.8667 -3.0017 2.3937 25 7 3.7375 -2.5775 1.7710 26 1 3.3384 -1.6980 1.8602 27 1 -0.3634 0.0001 1.0275 28 1 -0.3632 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1383 0.5140 32 1 4.0875 0.5458 -1.7124 33 1 2.6713 3.7707 -0.8530 34 1 4.2066 2.8834 -1.0082 35 1 2.9876 3.0043 -3.5529 36 1 3.7363 4.7746 -6.2792 37 1 0.3598 -2.3978 -0.1363 38 1 1.7465 -4.4600 -0.3121 39 1 4.0200 -5.6432 0.6628 40 1 5.9412 -4.8910 2.3657 41 1 5.4688 -2.4140 3.0709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755776626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:25 Heat of formation + Delta-G solvation = 22.352368 kcal Electronic energy + Delta-G solvation = -23423.644432 eV Core-core repulsion = 19920.605921 eV Total energy + Delta-G solvation = -3503.038511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40230 -39.87183 -37.34447 -35.29322 -34.01265 -33.81482 -31.30242 -30.99475 -29.76122 -28.25406 -26.94084 -25.62231 -23.60969 -22.26770 -21.14825 -20.51805 -20.43726 -19.19634 -17.82654 -17.14119 -17.02189 -16.26881 -15.56680 -15.15008 -14.95334 -14.41984 -14.27715 -14.18709 -13.87063 -13.70054 -13.40845 -13.12270 -12.94287 -12.82850 -12.58585 -12.40015 -12.31578 -12.15712 -11.90261 -11.46258 -10.92281 -10.80249 -10.64152 -10.14457 -10.03578 -9.86735 -9.74604 -9.54765 -8.94409 -8.87790 -8.49092 -7.61966 -6.90101 -5.73002 -3.02499 0.40049 2.53252 2.90479 2.99625 3.29028 3.44955 3.47718 3.49380 3.51477 4.58750 4.67954 4.80294 4.90574 4.99894 5.02388 5.07715 5.20594 5.26244 5.28155 5.37690 5.39919 5.55127 5.57026 5.66503 5.75887 5.78275 5.87479 6.02586 6.17528 6.19453 6.26735 6.47571 6.54109 6.76041 6.84264 7.01653 7.35474 7.51397 7.70170 8.18454 8.25228 8.45261 9.56347 10.14606 10.50268 11.49426 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.003109 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.168095 B = 9003.526912 C = 9530.209262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.606 5.606 3 C 0.084 3.916 4 C 0.087 3.913 5 H 0.094 0.906 6 O -0.546 6.546 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.551 3.449 18 O -0.548 6.548 19 C -0.289 4.289 20 C 0.046 3.954 21 C 0.006 3.994 22 C -0.146 4.146 23 C -0.218 4.218 24 C 0.021 3.979 25 N -0.509 5.509 26 H 0.417 0.583 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.374 0.626 33 H 0.023 0.977 34 H 0.020 0.980 35 H 0.388 0.612 36 H 0.255 0.745 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -17.533 17.829 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.338 5.338 3 C -0.040 4.040 4 C 0.026 3.974 5 H 0.112 0.888 6 O -0.351 6.351 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.346 3.654 18 O -0.430 6.430 19 C -0.311 4.311 20 C 0.026 3.974 21 C -0.106 4.106 22 C -0.171 4.171 23 C -0.242 4.242 24 C -0.117 4.117 25 N -0.104 5.104 26 H 0.260 0.740 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.221 0.779 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.222 0.778 36 H 0.065 0.935 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.610 -17.172 17.465 25.369 hybrid contribution 0.544 1.345 -0.251 1.472 sum -6.066 -15.828 17.214 24.158 Atomic orbital electron populations 1.21850 0.79659 1.03625 1.01515 1.47703 1.06803 1.06125 1.73142 1.22241 0.98058 0.84846 0.98813 1.22462 0.95683 0.88284 0.90966 0.88818 1.86554 1.33058 1.58833 1.56663 1.21240 0.96721 0.92543 0.89740 1.42251 1.68027 1.25284 1.01428 1.19220 1.28176 0.97831 0.92184 0.91295 1.24768 1.01501 0.99075 0.95611 1.69686 1.50281 1.39235 0.98609 0.86180 0.79370 0.83207 0.77353 1.21683 1.21737 1.20789 1.17068 0.87537 0.84106 0.76729 1.90814 1.13338 1.87518 1.51326 1.21962 1.00691 0.92755 1.15688 1.20812 0.89817 0.98352 0.88446 1.18234 1.00547 0.89470 1.02309 1.21479 0.95646 0.98322 1.01660 1.20803 1.02540 0.95897 1.04983 1.22092 0.90705 0.96823 1.02088 1.42636 1.20617 1.13612 1.33568 0.73989 0.92682 0.90830 0.90726 0.89762 0.89710 0.77903 0.95901 0.96245 0.77754 0.93498 0.84703 0.83740 0.84267 0.84611 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.18 59.85 0.61 1.26 16 2 N -0.61 -7.15 2.83 -185.04 -0.52 -7.67 16 3 C 0.08 1.09 5.15 -4.05 -0.02 1.07 16 4 C 0.09 1.49 3.27 -26.73 -0.09 1.40 16 5 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 6 O -0.55 -10.74 12.09 -43.90 -0.53 -11.27 16 7 C 0.13 2.59 5.90 -4.04 -0.02 2.57 16 8 N -0.73 -19.30 5.55 -59.91 -0.33 -19.63 16 9 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -29.21 13.06 55.49 0.72 -28.48 16 13 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 C 0.55 7.20 5.71 -15.01 -0.09 7.11 16 18 O -0.55 -8.59 11.10 -3.55 -0.04 -8.63 16 19 C -0.29 -3.03 9.02 -39.27 -0.35 -3.38 16 20 C 0.05 0.46 9.76 -39.21 -0.38 0.08 16 21 C 0.01 0.07 5.95 -83.91 -0.50 -0.43 16 22 C -0.15 -1.57 10.86 -38.98 -0.42 -1.99 16 23 C -0.22 -2.28 10.81 -39.97 -0.43 -2.72 16 24 C 0.02 0.22 11.90 -16.79 -0.20 0.02 16 25 N -0.51 -5.93 4.51 -10.56 -0.05 -5.98 16 26 H 0.42 4.88 6.14 -40.82 -0.25 4.63 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.61 8.07 -51.92 -0.42 0.19 16 29 H 0.07 0.54 5.99 -51.93 -0.31 0.23 16 30 H 0.08 0.91 8.07 -51.92 -0.42 0.49 16 31 H 0.08 1.14 7.42 -51.93 -0.39 0.75 16 32 H 0.37 7.01 8.44 45.56 0.38 7.40 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.39 11.15 7.67 -40.82 -0.31 10.83 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.14 1.06 6.02 -52.49 -0.32 0.75 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -35.69 342.78 -7.71 -43.40 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -4.96 Total: 17.88 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.15 Total: -2.71 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.18 Total: -61.76 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.57 Total: -19.90 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.69 -7.71 -43.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755776626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.753 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds