Wall clock time and date at job start Tue Mar 31 2020 03:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46490 * 120.00409 * 2 1 4 4 C 1.52995 * 109.47302 * 269.99897 * 3 2 1 5 5 H 1.09002 * 109.47653 * 59.99699 * 4 3 2 6 6 O 1.42908 * 109.46939 * 299.99905 * 4 3 2 7 7 C 1.53000 * 109.47394 * 180.02562 * 4 3 2 8 8 N 1.46503 * 109.47295 * 184.99803 * 7 4 3 9 9 C 1.36934 * 119.99928 * 179.97438 * 8 7 4 10 10 H 1.07993 * 120.00234 * 0.02562 * 9 8 7 11 11 C 1.38813 * 119.99649 * 179.97438 * 9 8 7 12 12 N 1.31621 * 120.00220 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99981 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47226 * 89.99797 * 13 11 9 15 15 H 1.48496 * 109.47584 * 209.99987 * 13 11 9 16 16 H 1.48507 * 109.47086 * 330.00079 * 13 11 9 17 17 C 1.34781 * 119.99370 * 179.97438 * 2 1 3 18 18 O 1.21777 * 119.99443 * 180.02562 * 17 2 1 19 19 C 1.41516 * 120.00044 * 0.02562 * 17 2 1 20 20 C 1.35622 * 119.99805 * 188.37984 * 19 17 2 21 21 C 1.41674 * 119.99580 * 32.33713 * 20 19 17 22 22 C 1.38285 * 126.25318 * 187.18380 * 21 20 19 23 23 C 1.39796 * 107.07478 * 180.02562 * 22 21 20 24 24 C 1.35508 * 107.90609 * 359.73566 * 23 22 21 25 25 N 1.35750 * 108.91162 * 0.43517 * 24 23 22 26 26 H 0.96999 * 125.68462 * 179.82625 * 25 24 23 27 27 H 1.08992 * 109.47709 * 270.00787 * 1 2 3 28 28 H 1.09008 * 109.46492 * 30.00019 * 1 2 3 29 29 H 1.09001 * 109.47287 * 149.99514 * 1 2 3 30 30 H 1.09011 * 109.47247 * 29.99762 * 3 2 1 31 31 H 1.08998 * 109.47470 * 149.99061 * 3 2 1 32 32 H 0.96705 * 113.99600 * 299.99762 * 6 4 3 33 33 H 1.09001 * 109.46920 * 304.99505 * 7 4 3 34 34 H 1.09001 * 109.47534 * 64.99543 * 7 4 3 35 35 H 0.96997 * 119.99778 * 359.97438 * 8 7 4 36 36 H 0.97002 * 119.99713 * 179.97438 * 12 11 9 37 37 H 1.08001 * 120.00212 * 8.38695 * 19 17 2 38 38 H 1.07997 * 120.00435 * 212.33907 * 20 19 17 39 39 H 1.07995 * 126.46743 * 0.04004 * 22 21 20 40 40 H 1.07996 * 126.04578 * 180.02562 * 23 22 21 41 41 H 1.08002 * 125.53943 * 180.25443 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7103 -1.4424 5 1 1.5003 1.8406 -1.9564 6 8 3.2250 0.7142 -2.1161 7 6 3.2183 3.0349 -1.4425 8 7 3.3584 3.5180 -2.8184 9 6 4.0127 4.6948 -3.0676 10 1 4.4259 5.2665 -2.2499 11 6 4.1459 5.1522 -4.3714 12 7 3.6436 4.4547 -5.3682 13 14 5.0391 6.7572 -4.7115 14 1 6.4835 6.4846 -4.9231 15 1 4.4717 7.3914 -5.9284 16 1 4.8725 7.6715 -3.5532 17 6 2.1388 -1.1673 0.0005 18 8 3.3566 -1.1673 0.0010 19 6 1.4311 -2.3928 0.0005 20 6 2.0982 -3.5611 0.1722 21 6 3.2566 -3.6021 0.9869 22 6 4.1105 -4.6789 1.1405 23 6 5.1134 -4.2837 2.0307 24 6 4.8667 -3.0017 2.3937 25 7 3.7375 -2.5775 1.7710 26 1 3.3384 -1.6980 1.8602 27 1 -0.3634 0.0001 1.0275 28 1 -0.3632 0.8901 -0.5139 29 1 -0.3634 -0.8899 -0.5139 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1383 0.5140 32 1 4.0875 0.5458 -1.7124 33 1 2.6713 3.7707 -0.8530 34 1 4.2066 2.8834 -1.0082 35 1 2.9876 3.0043 -3.5529 36 1 3.7363 4.7746 -6.2792 37 1 0.3598 -2.3978 -0.1363 38 1 1.7465 -4.4600 -0.3121 39 1 4.0200 -5.6432 0.6628 40 1 5.9412 -4.8910 2.3657 41 1 5.4688 -2.4140 3.0709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755776626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:25 Heat of formation + Delta-G solvation = -3.765068 kcal Electronic energy + Delta-G solvation = -23424.776969 eV Core-core repulsion = 19920.605921 eV Total energy + Delta-G solvation = -3504.171048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.21576 -40.81224 -38.74084 -36.41189 -35.87284 -34.66349 -33.24227 -31.79116 -31.15521 -29.20144 -27.96985 -26.94098 -25.13019 -23.60979 -22.60430 -21.38175 -21.21684 -20.04808 -19.26601 -18.70039 -18.02477 -17.50770 -16.68565 -16.52757 -16.32829 -16.06799 -15.33596 -15.14166 -14.99473 -14.92109 -14.57837 -14.34089 -14.05804 -13.90124 -13.73988 -13.55925 -13.28095 -13.08119 -12.99303 -12.84949 -12.76912 -12.48478 -12.19154 -12.04842 -11.84921 -11.17623 -11.00887 -10.90946 -10.59419 -9.78137 -9.48799 -9.05401 -8.41632 -7.97716 -5.28335 -0.38256 1.44218 1.47352 1.55626 1.71503 2.05001 2.12364 2.49879 2.53478 2.66092 3.33394 3.48514 3.74618 3.90935 4.07410 4.12694 4.20509 4.33004 4.35237 4.45740 4.47068 4.52129 4.55786 4.65052 4.70377 4.77265 4.87399 4.93578 5.05745 5.14976 5.21925 5.40386 5.42946 5.43874 5.56867 6.07567 6.22756 6.23435 6.47877 6.70312 6.76730 7.27732 7.28885 8.04558 8.27696 9.25757 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.003109 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.168095 B = 9003.526912 C = 9530.209262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.097 3.903 4 C 0.096 3.904 5 H 0.086 0.914 6 O -0.565 6.565 7 C 0.125 3.875 8 N -0.742 5.742 9 C -0.250 4.250 10 H 0.078 0.922 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.979 3.021 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.265 1.265 17 C 0.541 3.459 18 O -0.583 6.583 19 C -0.302 4.302 20 C 0.050 3.950 21 C -0.020 4.020 22 C -0.155 4.155 23 C -0.232 4.232 24 C 0.010 3.990 25 N -0.516 5.516 26 H 0.415 0.585 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.374 0.626 33 H 0.041 0.959 34 H 0.020 0.980 35 H 0.373 0.627 36 H 0.252 0.748 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -17.743 19.247 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.338 5.338 3 C -0.028 4.028 4 C 0.036 3.964 5 H 0.104 0.896 6 O -0.371 6.371 7 C -0.003 4.003 8 N -0.384 5.384 9 C -0.382 4.382 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.807 3.193 14 H -0.215 1.215 15 H -0.220 1.220 16 H -0.190 1.190 17 C 0.337 3.663 18 O -0.468 6.468 19 C -0.323 4.323 20 C 0.030 3.970 21 C -0.131 4.131 22 C -0.180 4.180 23 C -0.255 4.255 24 C -0.128 4.128 25 N -0.112 5.112 26 H 0.257 0.743 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.222 0.778 33 H 0.058 0.942 34 H 0.038 0.962 35 H 0.205 0.795 36 H 0.060 0.940 37 H 0.179 0.821 38 H 0.193 0.807 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.241 -17.387 18.942 26.712 hybrid contribution 0.746 1.341 -0.613 1.652 sum -6.495 -16.046 18.329 25.211 Atomic orbital electron populations 1.22097 0.77499 1.04318 1.03292 1.47787 1.08141 1.05230 1.72632 1.22002 0.98850 0.86297 0.95609 1.22410 0.94199 0.86271 0.93534 0.89624 1.86526 1.33385 1.59415 1.57768 1.21445 0.97397 0.94581 0.86864 1.42480 1.67826 1.24766 1.03378 1.19677 1.27438 0.98516 0.92565 0.90426 1.25677 1.02995 1.02867 0.95514 1.69860 1.52230 1.41231 0.98767 0.85067 0.77732 0.79132 0.77363 1.21493 1.21985 1.19003 1.17544 0.87363 0.85114 0.76249 1.90792 1.14870 1.88028 1.53061 1.22094 1.01890 0.91678 1.16663 1.21242 0.88901 0.99518 0.87379 1.18697 1.01577 0.89781 1.03084 1.21869 0.95489 0.99045 1.01600 1.21152 1.03120 0.96224 1.05050 1.22596 0.90638 0.97342 1.02268 1.42730 1.20998 1.13579 1.33857 0.74334 0.90308 0.90749 0.89500 0.87017 0.90234 0.77812 0.94160 0.96226 0.79519 0.93971 0.82119 0.80702 0.82320 0.82919 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.18 127.77 1.30 2.30 16 2 N -0.61 -13.39 2.83 -857.53 -2.42 -15.81 16 3 C 0.10 2.38 5.15 86.38 0.44 2.82 16 4 C 0.10 3.27 3.27 30.59 0.10 3.37 16 5 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 6 O -0.57 -22.55 12.09 -140.69 -1.70 -24.25 16 7 C 0.12 5.05 5.90 86.38 0.51 5.56 16 8 N -0.74 -39.81 5.55 -343.45 -1.91 -41.71 16 9 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 10 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 11 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 12 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 13 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 14 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 15 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 17 C 0.54 13.64 5.71 85.05 0.49 14.12 16 18 O -0.58 -18.27 11.10 3.69 0.04 -18.23 16 19 C -0.30 -5.82 9.02 22.47 0.20 -5.61 16 20 C 0.05 0.92 9.76 22.51 0.22 1.14 16 21 C -0.02 -0.46 5.95 39.08 0.23 -0.22 16 22 C -0.15 -3.16 10.86 22.66 0.25 -2.92 16 23 C -0.23 -4.63 10.81 22.02 0.24 -4.39 16 24 C 0.01 0.20 11.90 83.46 0.99 1.19 16 25 N -0.52 -11.86 4.51 -187.33 -0.84 -12.70 16 26 H 0.41 9.67 6.14 -92.71 -0.57 9.10 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 1.07 8.07 -2.38 -0.02 1.05 16 29 H 0.09 1.04 5.99 -2.39 -0.01 1.02 16 30 H 0.11 2.13 8.07 -2.38 -0.02 2.11 16 31 H 0.08 2.07 7.42 -2.39 -0.02 2.05 16 32 H 0.37 14.44 8.44 -74.05 -0.63 13.81 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.37 21.94 7.67 -92.71 -0.71 21.22 16 36 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.16 2.10 6.02 -2.91 -0.02 2.09 16 38 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 39 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 40 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -77.47 342.78 0.92 -76.55 By element: Atomic # 1 Polarization: 49.93 SS G_CDS: -0.84 Total: 49.09 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 6.28 Total: -0.53 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -4.89 Total: -131.96 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -1.66 Total: -42.48 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -77.47 0.92 -76.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755776626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.789 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds