Wall clock time and date at job start Tue Mar 31 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00264 * 2 1 4 4 C 1.52997 * 109.47566 * 270.00215 * 3 2 1 5 5 H 1.09000 * 109.46862 * 59.99334 * 4 3 2 6 6 O 1.42901 * 109.46881 * 300.00348 * 4 3 2 7 7 C 1.52998 * 109.47783 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47182 * 184.99917 * 7 4 3 9 9 C 1.36943 * 119.99613 * 179.97438 * 8 7 4 10 10 H 1.07999 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.38819 * 119.99563 * 179.97438 * 9 8 7 12 12 N 1.31616 * 119.99732 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00136 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47492 * 89.99698 * 13 11 9 15 15 H 1.48503 * 109.47038 * 210.00082 * 13 11 9 16 16 H 1.48504 * 109.47363 * 329.99867 * 13 11 9 17 17 C 1.34773 * 119.99772 * 179.97438 * 2 1 3 18 18 O 1.21781 * 120.00147 * 179.97438 * 17 2 1 19 19 C 1.41523 * 120.00115 * 0.02562 * 17 2 1 20 20 C 1.35618 * 120.00065 * 179.97438 * 19 17 2 21 21 C 1.41667 * 119.99826 * 179.97438 * 20 19 17 22 22 C 1.38287 * 126.25764 * 179.97438 * 21 20 19 23 23 C 1.39790 * 107.07798 * 179.80065 * 22 21 20 24 24 C 1.35504 * 107.91088 * 0.38082 * 23 22 21 25 25 N 1.35756 * 108.90616 * 359.60927 * 24 23 22 26 26 H 0.97005 * 125.68879 * 180.24286 * 25 24 23 27 27 H 1.09008 * 109.47360 * 269.99896 * 1 2 3 28 28 H 1.08998 * 109.47432 * 29.99579 * 1 2 3 29 29 H 1.08997 * 109.47500 * 150.00277 * 1 2 3 30 30 H 1.09001 * 109.47290 * 30.00384 * 3 2 1 31 31 H 1.09000 * 109.47574 * 149.99985 * 3 2 1 32 32 H 0.96701 * 114.00057 * 299.99646 * 6 4 3 33 33 H 1.09002 * 109.47111 * 305.00109 * 7 4 3 34 34 H 1.09004 * 109.46754 * 64.99748 * 7 4 3 35 35 H 0.97004 * 120.00467 * 0.02562 * 8 7 4 36 36 H 0.97000 * 119.99949 * 179.97438 * 12 11 9 37 37 H 1.08001 * 119.99943 * 359.97438 * 19 17 2 38 38 H 1.08001 * 119.99992 * 359.97438 * 20 19 17 39 39 H 1.07992 * 126.46196 * 0.02957 * 22 21 20 40 40 H 1.08001 * 126.04659 * 180.23286 * 23 22 21 41 41 H 1.08002 * 125.54882 * 179.88376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9562 6 8 3.2247 0.7144 -2.1161 7 6 3.2170 3.0357 -1.4425 8 7 3.3569 3.5187 -2.8184 9 6 4.0103 4.6961 -3.0676 10 1 4.4229 5.2683 -2.2499 11 6 4.1433 5.1535 -4.3715 12 7 4.7718 6.2849 -4.6111 13 14 3.4304 4.1635 -5.7859 14 1 2.0331 4.5978 -6.0396 15 1 4.2469 4.3851 -7.0063 16 1 3.4442 2.7202 -5.4365 17 6 2.1388 -1.1672 0.0005 18 8 3.3566 -1.1673 0.0001 19 6 1.4312 -2.3928 0.0005 20 6 2.1092 -3.5673 0.0005 21 6 1.4008 -4.7941 0.0011 22 6 1.9575 -6.0600 0.0006 23 6 0.8996 -6.9737 0.0061 24 6 -0.2586 -6.2703 0.0011 25 7 0.0321 -4.9443 0.0015 26 1 -0.6163 -4.2228 0.0018 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0872 0.5459 -1.7126 33 1 2.6693 3.7711 -0.8531 34 1 4.2053 2.8850 -1.0080 35 1 2.9860 3.0050 -3.5529 36 1 4.8650 6.6043 -5.5222 37 1 0.3511 -2.3928 0.0005 38 1 3.1892 -3.5673 0.0001 39 1 3.0109 -6.2978 0.0003 40 1 0.9894 -8.0500 0.0108 41 1 -1.2514 -6.6955 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755776628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:30 Heat of formation + Delta-G solvation = 1.760784 kcal Electronic energy + Delta-G solvation = -22732.859445 eV Core-core repulsion = 19228.928016 eV Total energy + Delta-G solvation = -3503.931429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.49883 -40.10297 -37.45061 -35.32351 -34.18284 -34.00854 -31.47802 -31.45010 -30.10388 -28.62109 -27.08501 -25.79178 -23.63622 -22.08989 -21.23540 -20.96626 -20.60103 -18.94143 -18.19612 -17.66932 -16.97545 -16.47773 -15.92498 -15.25515 -14.99644 -14.68792 -14.45944 -14.24241 -14.10946 -13.83168 -13.49147 -13.25847 -13.17349 -12.90058 -12.73325 -12.49127 -12.41996 -12.23858 -12.00512 -11.52575 -11.20126 -10.83321 -10.77703 -10.57238 -10.14100 -9.98462 -9.69577 -9.53509 -9.37590 -8.88052 -8.56301 -7.99772 -7.19970 -5.73769 -3.08920 0.40302 2.16427 2.67910 2.79969 2.97976 3.42576 3.44152 3.49968 3.51402 4.47849 4.57954 4.64366 4.72634 4.76278 4.86572 4.91146 4.95330 5.04658 5.09660 5.23094 5.31842 5.43003 5.52153 5.57157 5.61909 5.67162 5.72101 5.85765 5.90948 5.97549 6.03525 6.44633 6.48400 6.50821 6.61335 6.67862 7.04438 7.34131 8.00793 8.12563 8.21519 8.45293 9.25227 9.97722 10.18161 11.44470 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.002746 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.049426 B =10194.576731 C =10552.171344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.086 3.914 4 C 0.083 3.917 5 H 0.093 0.907 6 O -0.552 6.552 7 C 0.130 3.870 8 N -0.750 5.750 9 C -0.245 4.245 10 H 0.089 0.911 11 C 0.004 3.996 12 N -0.935 5.935 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.272 1.272 17 C 0.559 3.441 18 O -0.544 6.544 19 C -0.245 4.245 20 C 0.027 3.973 21 C 0.005 3.995 22 C -0.142 4.142 23 C -0.208 4.208 24 C 0.013 3.987 25 N -0.545 5.545 26 H 0.416 0.584 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.377 0.623 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.365 0.635 36 H 0.259 0.741 37 H 0.115 0.885 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.141 0.859 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.218 -25.269 13.645 32.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C -0.038 4.038 4 C 0.022 3.978 5 H 0.111 0.889 6 O -0.357 6.357 7 C 0.002 3.998 8 N -0.395 5.395 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.583 5.583 13 Si 0.713 3.287 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.198 1.198 17 C 0.351 3.649 18 O -0.424 6.424 19 C -0.267 4.267 20 C 0.006 3.994 21 C -0.105 4.105 22 C -0.167 4.167 23 C -0.232 4.232 24 C -0.122 4.122 25 N -0.139 5.139 26 H 0.253 0.747 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.225 0.775 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.198 0.802 36 H 0.069 0.931 37 H 0.133 0.867 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.159 0.841 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.088 -24.918 13.303 31.565 hybrid contribution -0.611 -0.110 -0.757 0.979 sum -14.700 -25.028 12.547 31.621 Atomic orbital electron populations 1.21807 0.79934 1.03279 1.01468 1.47567 1.06577 1.06182 1.73839 1.22204 0.98496 0.84743 0.98349 1.22525 0.95538 0.88304 0.91460 0.88914 1.86507 1.33388 1.58992 1.56825 1.21222 0.97469 0.92509 0.88637 1.42596 1.69328 1.25631 1.01994 1.19061 1.28132 0.96310 0.93970 0.89296 1.24665 1.00409 0.97096 0.96975 1.69706 1.47216 1.21568 1.19776 0.86540 0.78726 0.80430 0.82963 1.21189 1.21738 1.19814 1.16799 0.87436 0.84018 0.76600 1.90794 1.13543 1.87622 1.50430 1.21833 0.99860 0.93200 1.11833 1.20874 1.00646 0.88812 0.89028 1.18322 0.82406 0.95067 1.14689 1.21572 0.99534 0.90698 1.04919 1.20912 0.91797 0.99610 1.10873 1.22074 1.00229 0.82448 1.07470 1.42192 1.06903 1.07927 1.56907 0.74655 0.92683 0.90755 0.91313 0.89623 0.89235 0.77492 0.94904 0.95218 0.80155 0.93080 0.86703 0.83153 0.83695 0.84147 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.12 59.85 0.61 1.22 16 2 N -0.61 -7.19 2.83 -185.05 -0.52 -7.71 16 3 C 0.09 1.10 5.15 -4.05 -0.02 1.08 16 4 C 0.08 1.34 3.27 -26.73 -0.09 1.25 16 5 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 6 O -0.55 -10.17 12.09 -43.95 -0.53 -10.70 16 7 C 0.13 2.55 5.90 -4.05 -0.02 2.52 16 8 N -0.75 -18.70 5.35 -59.91 -0.32 -19.02 16 9 C -0.24 -7.19 10.47 -15.05 -0.16 -7.34 16 10 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 11 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -30.11 13.97 55.49 0.78 -29.33 16 13 Si 0.88 23.11 27.73 -169.99 -4.71 18.39 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 16 H -0.27 -6.94 6.52 56.52 0.37 -6.57 16 17 C 0.56 7.45 6.95 -15.01 -0.10 7.35 16 18 O -0.54 -8.99 14.47 -3.60 -0.05 -9.04 16 19 C -0.25 -2.49 8.66 -39.27 -0.34 -2.83 16 20 C 0.03 0.27 9.40 -39.21 -0.37 -0.10 16 21 C 0.01 0.04 6.74 -83.91 -0.57 -0.52 16 22 C -0.14 -1.20 10.86 -38.98 -0.42 -1.62 16 23 C -0.21 -1.48 10.81 -39.98 -0.43 -1.92 16 24 C 0.01 0.08 11.90 -16.79 -0.20 -0.12 16 25 N -0.54 -3.54 5.94 -10.56 -0.06 -3.60 16 26 H 0.42 1.70 7.87 -40.82 -0.32 1.38 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 28 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.07 0.44 6.08 -51.93 -0.32 0.12 16 30 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.09 1.23 7.42 -51.93 -0.39 0.85 16 32 H 0.38 6.58 8.44 45.56 0.38 6.97 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.37 9.17 5.53 -40.82 -0.23 8.95 16 36 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 37 H 0.12 0.82 4.96 -52.49 -0.26 0.56 16 38 H 0.15 1.58 7.46 -52.49 -0.39 1.19 16 39 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -37.30 345.88 -7.34 -44.64 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.90 Total: 12.16 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.21 Total: -0.99 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.13 Total: -59.66 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.58 Total: -19.75 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -4.71 Total: 18.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.30 -7.34 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755776628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.397 kcal (2) G-P(sol) polarization free energy of solvation -37.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds