Wall clock time and date at job start Tue Mar 31 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46492 * 120.00264 * 2 1 4 4 C 1.52997 * 109.47566 * 270.00215 * 3 2 1 5 5 H 1.09000 * 109.46862 * 59.99334 * 4 3 2 6 6 O 1.42901 * 109.46881 * 300.00348 * 4 3 2 7 7 C 1.52998 * 109.47783 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.47182 * 184.99917 * 7 4 3 9 9 C 1.36943 * 119.99613 * 179.97438 * 8 7 4 10 10 H 1.07999 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.38819 * 119.99563 * 179.97438 * 9 8 7 12 12 N 1.31616 * 119.99732 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00136 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47492 * 89.99698 * 13 11 9 15 15 H 1.48503 * 109.47038 * 210.00082 * 13 11 9 16 16 H 1.48504 * 109.47363 * 329.99867 * 13 11 9 17 17 C 1.34773 * 119.99772 * 179.97438 * 2 1 3 18 18 O 1.21781 * 120.00147 * 179.97438 * 17 2 1 19 19 C 1.41523 * 120.00115 * 0.02562 * 17 2 1 20 20 C 1.35618 * 120.00065 * 179.97438 * 19 17 2 21 21 C 1.41667 * 119.99826 * 179.97438 * 20 19 17 22 22 C 1.38287 * 126.25764 * 179.97438 * 21 20 19 23 23 C 1.39790 * 107.07798 * 179.80065 * 22 21 20 24 24 C 1.35504 * 107.91088 * 0.38082 * 23 22 21 25 25 N 1.35756 * 108.90616 * 359.60927 * 24 23 22 26 26 H 0.97005 * 125.68879 * 180.24286 * 25 24 23 27 27 H 1.09008 * 109.47360 * 269.99896 * 1 2 3 28 28 H 1.08998 * 109.47432 * 29.99579 * 1 2 3 29 29 H 1.08997 * 109.47500 * 150.00277 * 1 2 3 30 30 H 1.09001 * 109.47290 * 30.00384 * 3 2 1 31 31 H 1.09000 * 109.47574 * 149.99985 * 3 2 1 32 32 H 0.96701 * 114.00057 * 299.99646 * 6 4 3 33 33 H 1.09002 * 109.47111 * 305.00109 * 7 4 3 34 34 H 1.09004 * 109.46754 * 64.99748 * 7 4 3 35 35 H 0.97004 * 120.00467 * 0.02562 * 8 7 4 36 36 H 0.97000 * 119.99949 * 179.97438 * 12 11 9 37 37 H 1.08001 * 119.99943 * 359.97438 * 19 17 2 38 38 H 1.08001 * 119.99992 * 359.97438 * 20 19 17 39 39 H 1.07992 * 126.46196 * 0.02957 * 22 21 20 40 40 H 1.08001 * 126.04659 * 180.23286 * 23 22 21 41 41 H 1.08002 * 125.54882 * 179.88376 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9562 6 8 3.2247 0.7144 -2.1161 7 6 3.2170 3.0357 -1.4425 8 7 3.3569 3.5187 -2.8184 9 6 4.0103 4.6961 -3.0676 10 1 4.4229 5.2683 -2.2499 11 6 4.1433 5.1535 -4.3715 12 7 4.7718 6.2849 -4.6111 13 14 3.4304 4.1635 -5.7859 14 1 2.0331 4.5978 -6.0396 15 1 4.2469 4.3851 -7.0063 16 1 3.4442 2.7202 -5.4365 17 6 2.1388 -1.1672 0.0005 18 8 3.3566 -1.1673 0.0001 19 6 1.4312 -2.3928 0.0005 20 6 2.1092 -3.5673 0.0005 21 6 1.4008 -4.7941 0.0011 22 6 1.9575 -6.0600 0.0006 23 6 0.8996 -6.9737 0.0061 24 6 -0.2586 -6.2703 0.0011 25 7 0.0321 -4.9443 0.0015 26 1 -0.6163 -4.2228 0.0018 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0872 0.5459 -1.7126 33 1 2.6693 3.7711 -0.8531 34 1 4.2053 2.8850 -1.0080 35 1 2.9860 3.0050 -3.5529 36 1 4.8650 6.6043 -5.5222 37 1 0.3511 -2.3928 0.0005 38 1 3.1892 -3.5673 0.0001 39 1 3.0109 -6.2978 0.0003 40 1 0.9894 -8.0500 0.0108 41 1 -1.2514 -6.6955 0.0017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755776628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:29 Heat of formation + Delta-G solvation = -26.675732 kcal Electronic energy + Delta-G solvation = -22734.092545 eV Core-core repulsion = 19228.928016 eV Total energy + Delta-G solvation = -3505.164529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.04425 -41.05801 -38.81017 -36.46105 -35.93500 -34.83629 -33.50867 -32.00688 -31.42111 -29.45844 -28.07600 -26.96915 -24.90749 -23.52232 -22.69070 -21.58315 -21.20101 -19.82695 -19.75699 -18.91450 -17.76952 -17.68619 -16.92869 -16.64555 -16.39537 -16.21074 -15.39213 -15.21439 -14.97675 -14.88867 -14.77724 -14.45664 -14.31287 -13.94551 -13.79431 -13.53916 -13.31302 -13.23742 -13.08594 -12.89332 -12.80510 -12.50346 -12.29436 -11.95362 -11.87633 -11.29414 -11.21093 -11.03597 -10.84385 -9.90321 -9.55264 -9.34295 -8.60055 -8.06663 -5.39779 -0.31698 1.35131 1.38610 1.47058 1.57435 2.02579 2.12124 2.34263 2.45261 2.60029 3.23194 3.39395 3.64328 3.78383 3.94675 3.98980 4.12472 4.22190 4.34572 4.37683 4.41943 4.44095 4.51257 4.55215 4.66829 4.78665 4.88240 4.89127 4.98609 5.09796 5.20362 5.35342 5.36576 5.56569 5.70630 5.93479 6.05707 6.17365 6.46448 6.63834 6.74309 7.03859 7.26869 7.80345 7.98974 9.14664 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027098 B = 0.002746 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.049426 B =10194.576731 C =10552.171344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.094 3.906 4 C 0.093 3.907 5 H 0.099 0.901 6 O -0.568 6.568 7 C 0.126 3.874 8 N -0.754 5.754 9 C -0.236 4.236 10 H 0.059 0.941 11 C -0.063 4.063 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.273 1.273 15 H -0.294 1.294 16 H -0.262 1.262 17 C 0.548 3.452 18 O -0.590 6.590 19 C -0.259 4.259 20 C 0.035 3.965 21 C -0.022 4.022 22 C -0.154 4.154 23 C -0.230 4.230 24 C 0.032 3.968 25 N -0.538 5.538 26 H 0.428 0.572 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.378 0.622 33 H 0.048 0.952 34 H 0.024 0.976 35 H 0.366 0.634 36 H 0.259 0.741 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.461 -27.582 13.922 35.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.030 4.030 4 C 0.033 3.967 5 H 0.116 0.884 6 O -0.374 6.374 7 C -0.001 4.001 8 N -0.400 5.400 9 C -0.367 4.367 10 H 0.077 0.923 11 C -0.254 4.254 12 N -0.632 5.632 13 Si 0.783 3.217 14 H -0.199 1.199 15 H -0.220 1.220 16 H -0.187 1.187 17 C 0.342 3.658 18 O -0.474 6.474 19 C -0.280 4.280 20 C 0.015 3.985 21 C -0.132 4.132 22 C -0.180 4.180 23 C -0.253 4.253 24 C -0.104 4.104 25 N -0.133 5.133 26 H 0.268 0.732 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.226 0.774 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.199 0.801 36 H 0.068 0.932 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -17.392 -27.239 13.623 35.072 hybrid contribution 0.394 0.511 -0.728 0.973 sum -16.997 -26.728 12.895 34.199 Atomic orbital electron populations 1.22108 0.77277 1.04470 1.03344 1.47668 1.08229 1.05150 1.73027 1.22012 0.98968 0.86198 0.95861 1.22481 0.94576 0.86001 0.93669 0.88361 1.86475 1.33741 1.59447 1.57715 1.21443 0.97989 0.94717 0.85992 1.42630 1.68802 1.24346 1.04249 1.19071 1.27203 0.97247 0.93217 0.92271 1.25489 1.01583 0.98440 0.99915 1.69875 1.49328 1.23648 1.20337 0.85390 0.78174 0.79161 0.78954 1.19879 1.22047 1.18697 1.17354 0.87155 0.85325 0.75937 1.90766 1.15541 1.88297 1.52810 1.21822 1.01179 0.91610 1.13385 1.20815 1.00058 0.89660 0.88012 1.18206 0.83627 0.94490 1.16856 1.21874 1.00352 0.91294 1.04487 1.21235 0.91913 1.00491 1.11696 1.22719 1.01477 0.81927 1.04308 1.42228 1.06205 1.08753 1.56116 0.73210 0.90434 0.90112 0.89649 0.86742 0.90580 0.77373 0.93457 0.95770 0.80094 0.93227 0.83562 0.84941 0.83551 0.82684 0.77767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 10.12 127.77 1.29 2.15 16 2 N -0.61 -13.24 2.83 -857.55 -2.42 -15.66 16 3 C 0.09 2.27 5.15 86.38 0.44 2.71 16 4 C 0.09 2.90 3.27 30.59 0.10 3.00 16 5 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 6 O -0.57 -20.66 12.09 -140.65 -1.70 -22.36 16 7 C 0.13 4.83 5.90 86.38 0.51 5.34 16 8 N -0.75 -37.19 5.35 -343.45 -1.84 -39.03 16 9 C -0.24 -14.03 10.47 84.03 0.88 -13.15 16 10 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 11 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 12 N -0.98 -64.45 13.97 21.65 0.30 -64.15 16 13 Si 0.96 47.90 27.73 68.60 1.90 49.80 16 14 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 16 H -0.26 -12.52 6.52 99.48 0.65 -11.87 16 17 C 0.55 14.27 6.95 85.05 0.59 14.87 16 18 O -0.59 -20.06 14.47 3.73 0.05 -20.00 16 19 C -0.26 -4.91 8.66 22.47 0.19 -4.72 16 20 C 0.04 0.69 9.40 22.51 0.21 0.91 16 21 C -0.02 -0.36 6.74 39.08 0.26 -0.10 16 22 C -0.15 -2.47 10.86 22.66 0.25 -2.23 16 23 C -0.23 -2.78 10.81 22.01 0.24 -2.54 16 24 C 0.03 0.27 11.90 83.45 0.99 1.26 16 25 N -0.54 -5.47 5.94 -187.33 -1.11 -6.58 16 26 H 0.43 2.01 7.87 -92.70 -0.73 1.28 16 27 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.08 0.92 8.07 -2.39 -0.02 0.90 16 29 H 0.08 0.77 6.08 -2.39 -0.01 0.76 16 30 H 0.11 2.10 8.07 -2.39 -0.02 2.08 16 31 H 0.08 2.07 7.42 -2.39 -0.02 2.05 16 32 H 0.38 13.44 8.44 -74.06 -0.63 12.82 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.37 17.84 5.53 -92.71 -0.51 17.33 16 36 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 37 H 0.15 1.67 4.96 -2.91 -0.01 1.65 16 38 H 0.13 2.99 7.46 -2.91 -0.02 2.97 16 39 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.21 0.09 8.06 -2.91 -0.02 0.07 16 Total: -1.00 -82.25 345.88 0.76 -81.49 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -0.85 Total: 32.36 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.43 Total: 4.14 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -5.07 Total: -125.42 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.65 Total: -42.36 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.90 Total: 49.80 kcal Total: -82.25 0.76 -81.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755776628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.811 kcal (2) G-P(sol) polarization free energy of solvation -82.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds