Wall clock time and date at job start Tue Mar 31 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99779 * 2 1 4 4 H 1.48503 * 109.47084 * 270.00268 * 3 2 1 5 5 H 1.48498 * 109.47309 * 30.00269 * 3 2 1 6 6 H 1.48496 * 109.47215 * 150.00100 * 3 2 1 7 7 C 1.37873 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00145 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00079 * 359.97438 * 7 2 1 10 10 O 1.42098 * 104.27900 * 63.93078 * 9 7 2 11 11 O 1.42102 * 104.27572 * 296.07418 * 9 7 2 12 12 C 1.81395 * 104.44793 * 180.02562 * 9 7 2 13 13 C 1.50707 * 109.47086 * 179.97438 * 12 9 7 14 14 C 1.38258 * 119.99991 * 270.21358 * 13 12 9 15 15 C 1.38211 * 119.99779 * 180.25721 * 14 13 12 16 16 C 1.38256 * 120.00062 * 359.50247 * 15 14 13 17 17 C 1.38215 * 120.00141 * 0.28711 * 16 15 14 18 18 C 1.50700 * 120.00244 * 179.97438 * 17 16 15 19 19 F 1.39901 * 109.46773 * 359.97438 * 18 17 16 20 20 F 1.39897 * 109.47450 * 119.99670 * 18 17 16 21 21 F 1.39898 * 109.46871 * 239.99865 * 18 17 16 22 22 C 1.38211 * 119.99838 * 89.99706 * 13 12 9 23 23 H 0.97000 * 120.00244 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47596 * 59.99850 * 12 9 7 25 25 H 1.09001 * 109.47383 * 299.99427 * 12 9 7 26 26 H 1.07998 * 119.99837 * 0.03764 * 14 13 12 27 27 H 1.08002 * 120.00200 * 179.78851 * 15 14 13 28 28 H 1.07999 * 120.00077 * 180.25932 * 16 15 14 29 29 H 1.08001 * 120.00363 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4238 -2.7207 -1.2372 11 8 0.4247 -2.7211 1.2367 12 6 2.4186 -3.9902 -0.0005 13 6 1.7823 -5.3563 0.0001 14 6 1.4867 -5.9807 1.1977 15 6 0.9081 -7.2359 1.1983 16 6 0.6153 -7.8626 0.0012 17 6 0.9068 -7.2366 -1.1960 18 6 0.5882 -7.9200 -2.5008 19 9 0.0080 -9.1670 -2.2446 20 9 -0.3048 -7.1317 -3.2344 21 9 1.7662 -8.0962 -3.2347 22 6 1.4901 -5.9831 -1.1966 23 1 -0.4850 0.8400 0.0004 24 1 3.0378 -3.8778 0.8894 25 1 3.0378 -3.8779 -0.8906 26 1 1.7113 -5.4892 2.1328 27 1 0.6803 -7.7251 2.1338 28 1 0.1593 -8.8416 0.0017 29 1 1.7181 -5.4941 -2.1321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000120456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:06 Heat of formation + Delta-G solvation = -240.105008 kcal Electronic energy + Delta-G solvation = -21280.852379 eV Core-core repulsion = 17265.651391 eV Total energy + Delta-G solvation = -4015.200989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.032 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -51.23626 -48.74593 -48.70063 -40.58408 -37.19193 -36.15826 -35.11795 -34.39106 -32.82887 -28.82236 -28.01911 -27.13171 -23.54719 -22.68175 -20.67417 -19.55652 -19.44003 -19.17954 -18.88211 -17.63918 -17.34396 -16.72600 -16.41678 -15.98239 -15.89351 -15.60962 -15.41546 -15.35264 -15.13671 -14.92426 -14.85714 -14.41419 -13.99574 -13.89777 -13.67386 -13.55141 -13.28199 -12.99194 -12.52185 -12.41399 -12.33243 -12.27133 -12.23427 -11.71835 -11.20637 -10.79501 -10.30062 -9.86074 -8.69830 -7.43927 -0.37150 -0.11352 0.32807 1.34588 1.36416 1.51512 1.56677 2.19550 2.37481 2.61483 2.62771 2.89693 3.13551 3.34564 3.60600 3.62368 3.78679 3.83311 4.03248 4.13351 4.32632 4.47101 4.59668 4.72963 4.82343 5.02658 5.18585 5.28745 5.29425 5.66843 5.89635 6.82810 8.26394 Molecular weight = 294.03amu Principal moments of inertia in cm(-1) A = 0.029234 B = 0.004454 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.573994 B = 6284.500683 C = 6676.449626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.242 1.242 7 C -1.035 5.035 8 H 0.125 0.875 9 S 2.508 3.492 10 O -1.021 7.021 11 O -1.015 7.015 12 C -0.561 4.561 13 C -0.104 4.104 14 C -0.088 4.088 15 C -0.109 4.109 16 C -0.068 4.068 17 C -0.197 4.197 18 C 0.514 3.486 19 F -0.169 7.169 20 F -0.184 7.184 21 F -0.177 7.177 22 C -0.081 4.081 23 H 0.295 0.705 24 H 0.167 0.833 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.180 0.820 28 H 0.170 0.830 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.803 -15.172 0.709 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.146 4.146 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.165 1.165 7 C -1.167 5.167 8 H 0.143 0.857 9 S 2.700 3.300 10 O -1.018 7.018 11 O -1.012 7.012 12 C -0.689 4.689 13 C -0.106 4.106 14 C -0.107 4.107 15 C -0.127 4.127 16 C -0.086 4.086 17 C -0.198 4.198 18 C 0.460 3.540 19 F -0.151 7.151 20 F -0.166 7.166 21 F -0.159 7.159 22 C -0.100 4.100 23 H 0.104 0.896 24 H 0.185 0.815 25 H 0.175 0.825 26 H 0.173 0.827 27 H 0.197 0.803 28 H 0.188 0.812 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.685 -15.242 0.667 15.959 hybrid contribution 0.806 1.055 -0.555 1.439 sum 5.490 -14.187 0.112 15.213 Atomic orbital electron populations 1.70065 1.08893 1.31835 1.40914 1.26037 0.95345 1.05384 0.87810 0.85179 0.79352 0.74959 0.79997 1.18064 1.19007 1.16533 1.30716 1.07081 1.12062 1.66889 0.85666 1.03809 0.76441 0.76793 0.72988 1.93302 1.73206 1.87972 1.47323 1.93293 1.73047 1.87945 1.46897 1.29324 1.17769 1.07498 1.14340 1.19275 1.01962 0.94903 0.94427 1.21842 0.95259 0.95573 0.98004 1.21624 0.97351 0.94089 0.99601 1.21469 0.95861 1.00997 0.90307 1.20060 1.08873 0.97510 0.93361 1.18188 0.74305 0.76658 0.84862 1.93160 1.84776 1.43131 1.93996 1.93233 1.69253 1.74511 1.79575 1.93206 1.47811 1.95402 1.79464 1.21019 0.96186 0.93633 0.99150 0.89556 0.81506 0.82484 0.82737 0.80265 0.81224 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.52 13.03 21.45 0.28 -53.24 15 2 C 0.07 3.72 5.46 84.65 0.46 4.18 15 3 Si 0.99 40.75 29.54 68.60 2.03 42.77 15 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 6 H -0.24 -9.12 7.11 99.48 0.71 -8.41 15 7 C -1.04 -55.17 9.32 67.73 0.63 -54.54 15 8 H 0.13 5.73 7.81 -2.91 -0.02 5.71 15 9 S 2.51 128.29 4.46 -56.49 -0.25 128.04 15 10 O -1.02 -60.22 17.85 -127.65 -2.28 -62.50 15 11 O -1.01 -58.14 17.85 -127.65 -2.28 -60.41 15 12 C -0.56 -19.12 6.11 71.24 0.44 -18.68 15 13 C -0.10 -3.36 5.14 -19.86 -0.10 -3.47 15 14 C -0.09 -2.35 9.70 22.27 0.22 -2.14 15 15 C -0.11 -2.25 10.05 22.27 0.22 -2.02 15 16 C -0.07 -1.46 9.43 22.27 0.21 -1.25 15 17 C -0.20 -5.35 5.37 -19.86 -0.11 -5.46 15 18 C 0.51 13.42 3.32 71.24 0.24 13.66 15 19 F -0.17 -3.83 15.97 44.97 0.72 -3.11 15 20 F -0.18 -5.57 17.24 44.97 0.78 -4.79 15 21 F -0.18 -4.60 17.24 44.97 0.78 -3.83 15 22 C -0.08 -2.56 9.26 22.27 0.21 -2.35 15 23 H 0.29 16.05 8.31 -92.71 -0.77 15.28 15 24 H 0.17 4.56 8.09 -2.39 -0.02 4.54 15 25 H 0.16 4.58 8.09 -2.39 -0.02 4.56 15 26 H 0.15 3.61 8.06 -2.91 -0.02 3.59 15 27 H 0.18 2.18 8.06 -2.91 -0.02 2.15 15 28 H 0.17 2.53 7.16 -2.91 -0.02 2.51 15 29 H 0.14 4.26 8.06 -2.91 -0.02 4.24 15 Total: -1.00 -77.47 291.28 3.37 -74.09 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.20 Total: 15.06 kcal Atomic # 6 Polarization: -74.48 SS G_CDS: 2.41 Total: -72.07 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.28 Total: -53.24 kcal Atomic # 8 Polarization: -118.36 SS G_CDS: -4.56 Total: -122.92 kcal Atomic # 9 Polarization: -14.00 SS G_CDS: 2.27 Total: -11.73 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 128.29 SS G_CDS: -0.25 Total: 128.04 kcal Total: -77.47 3.37 -74.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000120456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.012 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds