Wall clock time and date at job start Tue Mar 31 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47097 * 204.49424 * 3 2 1 5 5 N 1.46495 * 109.46961 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99740 * 274.99621 * 5 4 3 7 7 C 1.50699 * 109.47381 * 275.00037 * 6 5 4 8 8 H 1.07997 * 119.99731 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00024 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00351 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 120.00043 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47150 * 89.99902 * 11 9 7 13 13 H 1.48501 * 109.46934 * 209.99832 * 11 9 7 14 14 H 1.48501 * 109.46891 * 329.99799 * 11 9 7 15 15 S 1.65601 * 120.00382 * 95.00116 * 5 4 3 16 16 O 1.42098 * 106.40290 * 156.45640 * 15 5 4 17 17 O 1.42107 * 106.39817 * 23.53674 * 15 5 4 18 18 C 1.76199 * 107.21620 * 269.99886 * 15 5 4 19 19 C 1.38237 * 119.99920 * 90.00183 * 18 15 5 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 15 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00031 * 269.97364 * 18 15 5 24 24 H 1.09004 * 109.46762 * 84.49202 * 3 2 1 25 25 H 1.09000 * 109.47178 * 324.49889 * 3 2 1 26 26 H 1.08995 * 109.47060 * 59.99818 * 4 3 2 27 27 H 1.08998 * 109.47069 * 299.99960 * 4 3 2 28 28 H 1.08996 * 109.47052 * 35.00952 * 6 5 4 29 29 H 1.09008 * 109.46583 * 155.00203 * 6 5 4 30 30 H 0.97004 * 120.00552 * 179.97438 * 10 9 7 31 31 H 1.08005 * 120.00088 * 359.96860 * 19 18 15 32 32 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 35 35 H 1.07999 * 119.99990 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3135 0.5981 5 7 4.5824 1.3144 0.5975 6 6 5.3156 0.6901 1.7015 7 6 5.4594 1.6773 2.8310 8 1 5.0456 2.6704 2.7361 9 6 6.1192 1.3128 3.9854 10 7 6.2443 2.1742 4.9713 11 14 6.8357 -0.4046 4.1491 12 1 8.2325 -0.4084 3.6451 13 1 6.8236 -0.8118 5.5772 14 1 6.0203 -1.3588 3.3553 15 16 5.4095 2.0212 -0.6510 16 8 6.6924 2.3592 -0.1419 17 8 4.5270 2.9734 -1.2288 18 6 5.6706 0.7790 -1.8730 19 6 4.7359 0.5859 -2.8730 20 6 4.9405 -0.3890 -3.8314 21 6 6.0803 -1.1702 -3.7904 22 6 7.0126 -0.9804 -2.7876 23 6 6.8104 -0.0021 -1.8321 24 1 2.9713 -0.0978 -1.0230 25 1 2.9717 -0.8358 0.5968 26 1 2.7540 1.4120 1.6209 27 1 2.7537 2.1499 0.0012 28 1 4.7690 -0.1855 2.0515 29 1 6.3040 0.3871 1.3557 30 1 6.7082 1.9176 5.7837 31 1 3.8454 1.1961 -2.9050 32 1 4.2101 -0.5402 -4.6124 33 1 6.2403 -1.9316 -4.5395 34 1 7.9010 -1.5935 -2.7531 35 1 7.5406 0.1487 -1.0508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001600137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:11 Heat of formation + Delta-G solvation = -13.920318 kcal Electronic energy + Delta-G solvation = -21535.443391 eV Core-core repulsion = 18240.033093 eV Total energy + Delta-G solvation = -3295.410298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -39.15123 -37.33190 -36.79871 -35.85531 -35.35811 -32.73431 -31.35834 -31.16588 -30.92542 -27.60054 -23.84192 -23.18918 -22.81986 -21.87001 -18.77298 -18.05172 -17.32823 -17.12597 -16.78400 -15.97231 -15.88281 -15.11853 -14.79318 -14.60209 -14.27947 -13.87979 -13.72918 -13.59278 -13.19189 -12.72112 -12.58657 -12.46780 -12.33177 -12.12249 -11.94322 -11.62401 -11.55230 -11.38045 -11.34478 -11.07756 -10.66305 -10.63851 -10.53951 -10.27832 -9.63860 -9.46615 -9.15107 -8.65291 -8.36626 -6.13608 -4.14165 0.60529 0.89738 1.17783 2.74610 2.82334 3.20752 3.24223 3.26570 3.31824 3.56824 4.09129 4.18947 4.32399 4.49898 4.75076 4.82728 4.88469 5.00412 5.11619 5.16419 5.20281 5.38011 5.44293 5.55030 5.57274 5.80710 6.01872 6.08099 6.09540 6.20897 6.24464 6.58593 6.72015 6.89518 7.13633 7.48548 7.58888 8.41270 8.91597 9.44376 10.99680 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.006923 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.807432 B = 4043.604801 C = 4965.267886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.218 3.782 3 C -0.056 4.056 4 C 0.125 3.875 5 N -0.973 5.973 6 C 0.223 3.777 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.076 3.924 10 N -0.892 5.892 11 Si 0.868 3.132 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.263 1.263 15 S 2.683 3.317 16 O -0.934 6.934 17 O -0.967 6.967 18 C -0.675 4.675 19 C -0.027 4.027 20 C -0.144 4.144 21 C -0.072 4.072 22 C -0.142 4.142 23 C -0.018 4.018 24 H 0.101 0.899 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -8.792 -15.825 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.100 4.100 3 C -0.098 4.098 4 C -0.003 4.003 5 N -0.811 5.811 6 C 0.100 3.900 7 C -0.574 4.574 8 H 0.099 0.901 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.695 3.305 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.188 1.188 15 S 2.772 3.228 16 O -0.924 6.924 17 O -0.958 6.958 18 C -0.759 4.759 19 C -0.046 4.046 20 C -0.163 4.163 21 C -0.090 4.090 22 C -0.160 4.160 23 C -0.037 4.037 24 H 0.119 0.881 25 H 0.136 0.864 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.078 -7.925 -15.677 17.689 hybrid contribution 0.955 -1.701 -0.108 1.954 sum -1.123 -9.627 -15.786 18.524 Atomic orbital electron populations 1.81203 1.12951 1.08720 1.09083 1.28976 0.94982 0.93102 0.92941 1.19955 0.81810 1.03370 1.04645 1.21154 0.80177 0.94559 1.04454 1.57249 1.13140 1.75478 1.35195 1.19573 0.91030 0.94455 0.84911 1.21327 1.37160 1.00580 0.98298 0.90122 1.24849 0.95323 0.97021 0.95580 1.69884 1.42239 1.34852 1.05996 0.86986 0.80498 0.85144 0.77903 1.19740 1.20971 1.18797 1.02380 0.73916 0.73898 0.72638 1.93624 1.39778 1.80971 1.78059 1.93524 1.66384 1.57283 1.78566 1.31504 1.03753 1.22133 1.18541 1.20959 0.97021 0.94938 0.91717 1.21273 0.98388 0.96925 0.99702 1.21438 0.93352 0.97321 0.96894 1.21318 1.00079 0.99029 0.95615 1.21059 0.94344 0.91183 0.97080 0.88060 0.86416 0.87746 0.88772 0.94330 0.94854 0.92427 0.84344 0.85323 0.85584 0.85195 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.70 18.54 42.15 0.78 -5.92 16 2 C 0.22 2.75 15.43 -20.76 -0.32 2.43 16 3 C -0.06 -0.60 6.02 -29.52 -0.18 -0.77 16 4 C 0.12 1.75 5.63 -4.05 -0.02 1.73 16 5 N -0.97 -16.68 2.77 -115.66 -0.32 -17.00 16 6 C 0.22 4.55 4.17 -5.19 -0.02 4.53 16 7 C -0.53 -13.95 9.94 -34.44 -0.34 -14.29 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 10 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 11 Si 0.87 19.58 27.47 -169.99 -4.67 14.91 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 15 S 2.68 46.51 5.65 -107.50 -0.61 45.90 16 16 O -0.93 -19.86 16.25 -57.17 -0.93 -20.78 16 17 O -0.97 -17.62 15.84 -57.17 -0.91 -18.53 16 18 C -0.67 -9.20 5.97 -39.58 -0.24 -9.43 16 19 C -0.03 -0.31 8.42 -39.58 -0.33 -0.64 16 20 C -0.14 -1.35 10.05 -39.58 -0.40 -1.75 16 21 C -0.07 -0.64 10.05 -39.58 -0.40 -1.04 16 22 C -0.14 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 24 H 0.10 0.89 7.01 -51.93 -0.36 0.53 16 25 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.10 1.53 8.11 -51.93 -0.42 1.11 16 27 H 0.09 1.26 6.91 -51.93 -0.36 0.90 16 28 H 0.04 0.72 7.17 -51.93 -0.37 0.35 16 29 H 0.03 0.67 7.04 -51.92 -0.37 0.31 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.14 1.40 7.62 -52.48 -0.40 1.00 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.83 7.62 -52.49 -0.40 1.43 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -33.81 322.10 -8.11 -41.91 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -3.96 Total: -0.19 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.12 Total: -19.73 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 1.23 Total: -48.35 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.83 Total: -39.31 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.67 Total: 14.91 kcal Atomic # 16 Polarization: 46.51 SS G_CDS: -0.61 Total: 45.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.81 -8.11 -41.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001600137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.994 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds