Wall clock time and date at job start Tue Mar 31 2020 03:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47097 * 204.49424 * 3 2 1 5 5 N 1.46495 * 109.46961 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99740 * 274.99621 * 5 4 3 7 7 C 1.50699 * 109.47381 * 275.00037 * 6 5 4 8 8 H 1.07997 * 119.99731 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00024 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00351 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 120.00043 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47150 * 89.99902 * 11 9 7 13 13 H 1.48501 * 109.46934 * 209.99832 * 11 9 7 14 14 H 1.48501 * 109.46891 * 329.99799 * 11 9 7 15 15 S 1.65601 * 120.00382 * 95.00116 * 5 4 3 16 16 O 1.42098 * 106.40290 * 156.45640 * 15 5 4 17 17 O 1.42107 * 106.39817 * 23.53674 * 15 5 4 18 18 C 1.76199 * 107.21620 * 269.99886 * 15 5 4 19 19 C 1.38237 * 119.99920 * 90.00183 * 18 15 5 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 15 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00031 * 269.97364 * 18 15 5 24 24 H 1.09004 * 109.46762 * 84.49202 * 3 2 1 25 25 H 1.09000 * 109.47178 * 324.49889 * 3 2 1 26 26 H 1.08995 * 109.47060 * 59.99818 * 4 3 2 27 27 H 1.08998 * 109.47069 * 299.99960 * 4 3 2 28 28 H 1.08996 * 109.47052 * 35.00952 * 6 5 4 29 29 H 1.09008 * 109.46583 * 155.00203 * 6 5 4 30 30 H 0.97004 * 120.00552 * 179.97438 * 10 9 7 31 31 H 1.08005 * 120.00088 * 359.96860 * 19 18 15 32 32 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 35 35 H 1.07999 * 119.99990 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3135 0.5981 5 7 4.5824 1.3144 0.5975 6 6 5.3156 0.6901 1.7015 7 6 5.4594 1.6773 2.8310 8 1 5.0456 2.6704 2.7361 9 6 6.1192 1.3128 3.9854 10 7 6.2443 2.1742 4.9713 11 14 6.8357 -0.4046 4.1491 12 1 8.2325 -0.4084 3.6451 13 1 6.8236 -0.8118 5.5772 14 1 6.0203 -1.3588 3.3553 15 16 5.4095 2.0212 -0.6510 16 8 6.6924 2.3592 -0.1419 17 8 4.5270 2.9734 -1.2288 18 6 5.6706 0.7790 -1.8730 19 6 4.7359 0.5859 -2.8730 20 6 4.9405 -0.3890 -3.8314 21 6 6.0803 -1.1702 -3.7904 22 6 7.0126 -0.9804 -2.7876 23 6 6.8104 -0.0021 -1.8321 24 1 2.9713 -0.0978 -1.0230 25 1 2.9717 -0.8358 0.5968 26 1 2.7540 1.4120 1.6209 27 1 2.7537 2.1499 0.0012 28 1 4.7690 -0.1855 2.0515 29 1 6.3040 0.3871 1.3557 30 1 6.7082 1.9176 5.7837 31 1 3.8454 1.1961 -2.9050 32 1 4.2101 -0.5402 -4.6124 33 1 6.2403 -1.9316 -4.5395 34 1 7.9010 -1.5935 -2.7531 35 1 7.5406 0.1487 -1.0508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001600137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:10 Heat of formation + Delta-G solvation = -37.778925 kcal Electronic energy + Delta-G solvation = -21536.477978 eV Core-core repulsion = 18240.033093 eV Total energy + Delta-G solvation = -3296.444885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.95710 -38.53385 -38.22818 -37.12642 -36.82331 -34.63364 -32.37361 -32.15261 -31.88811 -29.27639 -25.19672 -24.16099 -23.62394 -23.41773 -19.95676 -19.35438 -18.76849 -18.39632 -18.26186 -17.22902 -16.88119 -16.31126 -15.95844 -15.71421 -15.43073 -15.25461 -14.91343 -14.48387 -14.39822 -14.12205 -13.87023 -13.72392 -13.53245 -13.36719 -13.15130 -13.08000 -12.98097 -12.84854 -12.60513 -12.20694 -12.12536 -12.02550 -11.76420 -11.64791 -11.53265 -10.70471 -10.31997 -9.94405 -9.82775 -8.20825 -6.26489 -0.59018 -0.09388 0.39595 1.44175 1.47996 1.55675 1.69563 1.82746 2.09261 2.42894 2.66069 2.90302 3.08135 3.15412 3.36988 3.90708 3.93775 4.05188 4.09160 4.19735 4.41407 4.49026 4.51556 4.54270 4.78379 4.90929 4.93932 5.05729 5.11753 5.20765 5.36657 5.36925 5.47245 5.55435 5.71317 5.96757 6.36744 6.59560 6.78297 7.36434 8.96651 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.006923 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.807432 B = 4043.604801 C = 4965.267886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.244 3.756 3 C -0.043 4.043 4 C 0.117 3.883 5 N -0.978 5.978 6 C 0.228 3.772 7 C -0.539 4.539 8 H 0.030 0.970 9 C 0.006 3.994 10 N -0.952 5.952 11 Si 0.937 3.063 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.216 1.216 15 S 2.683 3.317 16 O -0.988 6.988 17 O -0.988 6.988 18 C -0.675 4.675 19 C -0.037 4.037 20 C -0.137 4.137 21 C -0.059 4.059 22 C -0.140 4.140 23 C -0.040 4.040 24 H 0.129 0.871 25 H 0.141 0.859 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -12.896 -18.932 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.074 4.074 3 C -0.085 4.085 4 C -0.010 4.010 5 N -0.814 5.814 6 C 0.104 3.896 7 C -0.579 4.579 8 H 0.048 0.952 9 C -0.192 4.192 10 N -0.593 5.593 11 Si 0.758 3.242 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.138 1.138 15 S 2.778 3.222 16 O -0.979 6.979 17 O -0.979 6.979 18 C -0.766 4.766 19 C -0.056 4.056 20 C -0.156 4.156 21 C -0.077 4.077 22 C -0.159 4.159 23 C -0.060 4.060 24 H 0.147 0.853 25 H 0.159 0.841 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.088 -11.984 -18.772 22.369 hybrid contribution 0.942 -0.342 0.705 1.226 sum -1.146 -12.326 -18.067 21.902 Atomic orbital electron populations 1.81237 1.14384 1.10148 1.10784 1.29163 0.95029 0.91717 0.91459 1.19945 0.80283 1.01803 1.06420 1.21261 0.78607 0.96915 1.04238 1.57046 1.14169 1.75369 1.34830 1.19396 0.92493 0.93756 0.83912 1.21724 1.35912 0.99838 1.00392 0.95210 1.25925 0.95951 1.02233 0.95071 1.70084 1.44323 1.37876 1.07008 0.85890 0.80111 0.79892 0.78261 1.19520 1.21392 1.13759 1.01806 0.72624 0.74618 0.73103 1.93553 1.42022 1.82740 1.79571 1.93484 1.66505 1.59147 1.78743 1.30627 1.05698 1.21985 1.18284 1.21186 0.96858 0.95877 0.91709 1.21682 0.99167 0.95447 0.99303 1.21941 0.92104 0.97135 0.96544 1.21637 1.01313 0.98080 0.94852 1.21140 0.94059 0.92490 0.98284 0.85320 0.84086 0.89044 0.88694 0.91082 0.93963 0.92607 0.83524 0.82012 0.81755 0.82679 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.18 18.54 20.01 0.37 -13.81 16 2 C 0.24 5.65 15.43 89.44 1.38 7.03 16 3 C -0.04 -0.80 6.02 28.79 0.17 -0.62 16 4 C 0.12 3.22 5.63 86.38 0.49 3.71 16 5 N -0.98 -33.36 2.77 -519.85 -1.44 -34.80 16 6 C 0.23 9.14 4.17 85.63 0.36 9.50 16 7 C -0.54 -29.21 9.94 25.60 0.25 -28.95 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.01 0.31 5.47 84.65 0.46 0.77 16 10 N -0.95 -58.79 13.96 21.44 0.30 -58.49 16 11 Si 0.94 39.81 27.47 68.60 1.88 41.70 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 13 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.22 -7.46 6.54 99.48 0.65 -6.81 16 15 S 2.68 94.54 5.65 -56.49 -0.32 94.22 16 16 O -0.99 -44.08 16.25 -128.00 -2.08 -46.16 16 17 O -0.99 -36.88 15.84 -128.00 -2.03 -38.91 16 18 C -0.68 -17.20 5.97 22.27 0.13 -17.06 16 19 C -0.04 -0.72 8.42 22.27 0.19 -0.53 16 20 C -0.14 -1.84 10.05 22.27 0.22 -1.61 16 21 C -0.06 -0.71 10.05 22.27 0.22 -0.49 16 22 C -0.14 -2.24 10.05 22.27 0.22 -2.02 16 23 C -0.04 -0.94 9.52 22.27 0.21 -0.73 16 24 H 0.13 1.76 7.01 -2.39 -0.02 1.74 16 25 H 0.14 2.07 8.14 -2.39 -0.02 2.06 16 26 H 0.09 2.72 8.11 -2.39 -0.02 2.70 16 27 H 0.09 2.57 6.91 -2.39 -0.02 2.55 16 28 H 0.07 2.41 7.17 -2.39 -0.02 2.39 16 29 H 0.04 1.65 7.04 -2.38 -0.02 1.63 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.15 2.54 7.62 -2.91 -0.02 2.52 16 32 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.13 3.28 7.62 -2.91 -0.02 3.25 16 Total: -1.00 -79.71 322.10 2.06 -77.66 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.05 Total: 9.62 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.32 Total: -31.02 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -0.77 Total: -107.10 kcal Atomic # 8 Polarization: -80.96 SS G_CDS: -4.11 Total: -85.07 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.88 Total: 41.70 kcal Atomic # 16 Polarization: 94.54 SS G_CDS: -0.32 Total: 94.22 kcal Total: -79.71 2.06 -77.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001600137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.876 kcal (2) G-P(sol) polarization free energy of solvation -79.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds