Wall clock time and date at job start Tue Mar 31 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48495 * 109.47231 * 239.99600 * 3 2 1 5 5 H 1.48499 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47139 * 119.99756 * 3 2 1 7 7 C 1.37873 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00398 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99951 * 0.02562 * 7 2 1 10 10 S 1.81393 * 109.47321 * 180.02562 * 9 7 2 11 11 O 1.42105 * 110.54287 * 68.37614 * 10 9 7 12 12 O 1.42101 * 110.54176 * 291.62297 * 10 9 7 13 13 C 1.76202 * 104.44963 * 180.02562 * 10 9 7 14 14 C 1.38265 * 119.97780 * 269.97550 * 13 10 9 15 15 C 1.38211 * 120.03660 * 179.97438 * 14 13 10 16 16 C 1.38344 * 119.99792 * 0.04223 * 15 14 13 17 17 Cl 1.73605 * 120.01708 * 180.25403 * 16 15 14 18 18 C 1.38445 * 119.96254 * 359.97438 * 16 15 14 19 19 Cl 1.73601 * 120.01534 * 180.02562 * 18 16 15 20 20 C 1.38196 * 119.98164 * 90.00270 * 13 10 9 21 21 H 0.96998 * 120.00374 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46975 * 60.00039 * 9 7 2 23 23 H 1.09006 * 109.46790 * 300.00193 * 9 7 2 24 24 H 1.07998 * 119.98546 * 0.02562 * 14 13 10 25 25 H 1.08000 * 119.99870 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.00416 * 0.02562 * 20 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0021 11 8 3.1258 -3.9376 1.2397 12 8 3.1276 -3.9387 -1.2344 13 6 1.4188 -5.3209 0.0012 14 6 1.0214 -5.8867 1.1985 15 6 0.2279 -7.0183 1.1992 16 6 -0.1686 -7.5859 0.0014 17 17 -1.1708 -9.0034 0.0017 18 6 0.2296 -7.0194 -1.1974 19 17 -0.2676 -7.7301 -2.7012 20 6 1.0239 -5.8866 -1.1962 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 1.3306 -5.4439 2.1337 25 1 -0.0825 -7.4596 2.1348 26 1 1.3353 -5.4446 -2.1311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002023273.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:20 Heat of formation + Delta-G solvation = -67.140283 kcal Electronic energy + Delta-G solvation = -16547.645108 eV Core-core repulsion = 13384.244393 eV Total energy + Delta-G solvation = -3163.400714 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 293.967 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -39.49750 -36.81091 -36.67838 -36.31618 -35.16603 -33.46085 -31.30282 -30.94150 -29.15948 -23.89429 -23.25406 -23.08142 -18.86901 -17.75650 -16.94564 -16.29350 -16.20512 -15.53639 -15.08977 -14.72727 -14.42714 -14.15525 -14.05330 -12.91973 -12.54370 -12.29459 -12.12178 -12.10974 -11.77972 -11.52302 -11.39780 -11.30291 -11.22815 -11.11477 -10.94734 -10.72950 -10.48889 -9.94606 -9.48145 -9.18003 -8.98517 -8.79376 -6.42243 -4.54661 0.41124 0.88297 0.93568 1.57207 1.97262 3.05738 3.19416 3.22310 3.26540 3.67181 4.17527 4.34957 4.63750 4.70064 4.84751 4.95542 5.05442 5.27181 5.44338 5.55517 5.73391 5.91067 6.33672 6.53429 6.59365 7.32844 7.62859 8.46785 9.14124 10.69004 Molecular weight = 293.97amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.004299 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.740222 B = 6511.900411 C = 6632.395607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.079 3.921 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.073 0.927 9 C -0.389 4.389 10 S 2.461 3.539 11 O -0.953 6.953 12 O -0.953 6.953 13 C -0.637 4.637 14 C -0.008 4.008 15 C -0.122 4.122 16 C 0.008 3.992 17 Cl -0.047 7.047 18 C -0.055 4.055 19 Cl -0.047 7.047 20 C -0.004 4.004 21 H 0.271 0.729 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.158 0.842 25 H 0.150 0.850 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 -13.797 0.191 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.128 4.128 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.091 0.909 9 C -0.525 4.525 10 S 2.642 3.358 11 O -0.950 6.950 12 O -0.950 6.950 13 C -0.719 4.719 14 C -0.027 4.027 15 C -0.142 4.142 16 C -0.019 4.019 17 Cl -0.018 7.018 18 C -0.083 4.083 19 Cl -0.018 7.018 20 C -0.023 4.023 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.176 0.824 25 H 0.168 0.832 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.616 -14.004 0.051 14.247 hybrid contribution -0.753 0.291 -0.151 0.821 sum -3.369 -13.714 -0.100 14.122 Atomic orbital electron populations 1.69931 1.06274 1.28088 1.46969 1.24916 0.95033 0.99594 0.93264 0.86396 0.79636 0.81196 0.79575 1.19305 1.20670 1.19317 1.20300 0.92928 0.88321 1.56369 0.90891 1.27450 1.09330 1.08271 1.07418 1.07080 0.78082 0.76073 0.74523 1.93475 1.70782 1.86336 1.44398 1.93478 1.70764 1.86295 1.44463 1.31567 1.18638 1.23810 0.97852 1.21114 0.90985 0.92706 0.97923 1.21183 0.99439 0.96925 0.96612 1.21033 0.96197 0.90901 0.93812 1.98394 1.66965 1.37536 1.98891 1.20825 1.02893 0.97790 0.86796 1.98386 1.90062 1.82939 1.30391 1.20899 0.91007 0.91549 0.98825 0.91942 0.89102 0.89108 0.82417 0.83244 0.82153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.66 13.29 55.43 0.74 -22.93 15 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 15 3 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -0.54 -14.02 9.13 -34.44 -0.31 -14.34 15 8 H 0.07 1.85 7.71 -52.49 -0.40 1.44 15 9 C -0.39 -8.67 5.74 36.01 0.21 -8.46 15 10 S 2.46 48.46 5.08 -107.50 -0.55 47.92 15 11 O -0.95 -20.45 17.13 -57.54 -0.99 -21.44 15 12 O -0.95 -20.78 17.12 -57.54 -0.99 -21.77 15 13 C -0.64 -10.31 5.66 -39.59 -0.22 -10.53 15 14 C -0.01 -0.12 9.47 -39.58 -0.37 -0.49 15 15 C -0.12 -1.48 9.83 -39.55 -0.39 -1.87 15 16 C 0.01 0.11 6.32 -39.47 -0.25 -0.14 15 17 Cl -0.05 -0.53 27.96 -51.86 -1.45 -1.98 15 18 C -0.05 -0.77 6.32 -39.47 -0.25 -1.02 15 19 Cl -0.05 -0.59 27.96 -51.86 -1.45 -2.04 15 20 C 0.00 -0.05 9.25 -39.56 -0.37 -0.42 15 21 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 22 H 0.09 1.99 8.14 -51.92 -0.42 1.57 15 23 H 0.09 1.97 8.14 -51.92 -0.42 1.54 15 24 H 0.16 1.96 7.57 -52.49 -0.40 1.56 15 25 H 0.15 1.34 8.06 -52.49 -0.42 0.92 15 26 H 0.16 2.33 7.57 -52.49 -0.40 1.94 15 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -30.19 282.08 -9.11 -39.30 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -1.60 Total: -1.03 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: -2.06 Total: -35.30 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.74 Total: -22.93 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -1.97 Total: -43.21 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 48.46 SS G_CDS: -0.55 Total: 47.92 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -2.90 Total: -4.02 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.19 -9.11 -39.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002023273.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.836 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds