Wall clock time and date at job start Tue Mar 31 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48495 * 109.47231 * 239.99600 * 3 2 1 5 5 H 1.48499 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47139 * 119.99756 * 3 2 1 7 7 C 1.37873 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00398 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99951 * 0.02562 * 7 2 1 10 10 S 1.81393 * 109.47321 * 180.02562 * 9 7 2 11 11 O 1.42105 * 110.54287 * 68.37614 * 10 9 7 12 12 O 1.42101 * 110.54176 * 291.62297 * 10 9 7 13 13 C 1.76202 * 104.44963 * 180.02562 * 10 9 7 14 14 C 1.38265 * 119.97780 * 269.97550 * 13 10 9 15 15 C 1.38211 * 120.03660 * 179.97438 * 14 13 10 16 16 C 1.38344 * 119.99792 * 0.04223 * 15 14 13 17 17 Cl 1.73605 * 120.01708 * 180.25403 * 16 15 14 18 18 C 1.38445 * 119.96254 * 359.97438 * 16 15 14 19 19 Cl 1.73601 * 120.01534 * 180.02562 * 18 16 15 20 20 C 1.38196 * 119.98164 * 90.00270 * 13 10 9 21 21 H 0.96998 * 120.00374 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46975 * 60.00039 * 9 7 2 23 23 H 1.09006 * 109.46790 * 300.00193 * 9 7 2 24 24 H 1.07998 * 119.98546 * 0.02562 * 14 13 10 25 25 H 1.08000 * 119.99870 * 180.02562 * 15 14 13 26 26 H 1.08002 * 120.00416 * 0.02562 * 20 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0021 11 8 3.1258 -3.9376 1.2397 12 8 3.1276 -3.9387 -1.2344 13 6 1.4188 -5.3209 0.0012 14 6 1.0214 -5.8867 1.1985 15 6 0.2279 -7.0183 1.1992 16 6 -0.1686 -7.5859 0.0014 17 17 -1.1708 -9.0034 0.0017 18 6 0.2296 -7.0194 -1.1974 19 17 -0.2676 -7.7301 -2.7012 20 6 1.0239 -5.8866 -1.1962 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 1.3306 -5.4439 2.1337 25 1 -0.0825 -7.4596 2.1348 26 1 1.3353 -5.4446 -2.1311 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002023273.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:18 Heat of formation + Delta-G solvation = -86.180060 kcal Electronic energy + Delta-G solvation = -16548.470734 eV Core-core repulsion = 13384.244393 eV Total energy + Delta-G solvation = -3164.226341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 293.967 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.59130 -38.01309 -37.79128 -37.71036 -36.84971 -35.39759 -32.41565 -32.05957 -31.03265 -25.65939 -24.51558 -24.24125 -20.24781 -19.27402 -18.63989 -17.59043 -17.51331 -17.21493 -16.33072 -16.24358 -16.08280 -15.31609 -15.08724 -14.47554 -14.06047 -14.01706 -13.44018 -13.22280 -13.08793 -13.03694 -12.93394 -12.86704 -12.69291 -12.52085 -12.41289 -12.13280 -11.89155 -11.75046 -11.09326 -10.75290 -10.36205 -10.09917 -8.39362 -6.57655 -0.83672 -0.56753 -0.19543 0.55309 0.91884 1.42640 1.44737 1.52908 1.92758 2.15680 2.35800 2.95089 3.02947 3.23066 3.41727 3.79004 3.92182 4.03089 4.38069 4.46240 4.66576 4.71161 4.78413 4.85104 5.26443 5.35192 5.72223 6.51806 7.14384 8.72531 Molecular weight = 293.97amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.004299 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.740222 B = 6511.900411 C = 6632.395607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.569 4.569 8 H 0.069 0.931 9 C -0.406 4.406 10 S 2.495 3.505 11 O -0.972 6.972 12 O -0.979 6.979 13 C -0.646 4.646 14 C -0.012 4.012 15 C -0.109 4.109 16 C 0.009 3.991 17 Cl -0.026 7.026 18 C -0.062 4.062 19 Cl -0.037 7.037 20 C -0.016 4.016 21 H 0.274 0.726 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.173 0.827 25 H 0.188 0.812 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 -15.040 0.843 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.607 4.607 8 H 0.088 0.912 9 C -0.541 4.541 10 S 2.680 3.320 11 O -0.970 6.970 12 O -0.976 6.976 13 C -0.733 4.733 14 C -0.031 4.031 15 C -0.128 4.128 16 C -0.018 4.018 17 Cl 0.003 6.997 18 C -0.090 4.090 19 Cl -0.008 7.008 20 C -0.035 4.035 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.110 0.890 24 H 0.190 0.810 25 H 0.205 0.795 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.016 -15.194 0.699 15.506 hybrid contribution -0.714 0.476 -0.362 0.931 sum -3.730 -14.718 0.338 15.187 Atomic orbital electron populations 1.70006 1.07452 1.29011 1.47861 1.25762 0.95890 1.02891 0.92863 0.85557 0.78742 0.77561 0.79866 1.18787 1.19674 1.18585 1.20747 0.93295 0.90348 1.56319 0.91246 1.27511 1.10143 1.09217 1.07181 1.05502 0.77215 0.75856 0.73393 1.93439 1.71468 1.86908 1.45141 1.93437 1.71658 1.86925 1.45575 1.30841 1.20171 1.22758 0.99504 1.21396 0.90915 0.93288 0.97528 1.21551 0.97733 0.95667 0.97850 1.21243 0.95678 0.91239 0.93686 1.98408 1.66203 1.36243 1.98852 1.20868 1.02771 0.97575 0.87816 1.98389 1.89874 1.82611 1.29883 1.20939 0.91686 0.92373 0.98542 0.91659 0.89490 0.89011 0.80988 0.79492 0.82246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.56 13.29 21.45 0.28 -49.28 15 2 C 0.03 1.57 5.46 84.65 0.46 2.03 15 3 Si 0.96 40.99 29.54 68.60 2.03 43.02 15 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 15 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 15 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 7 C -0.57 -30.12 9.13 25.60 0.23 -29.89 15 8 H 0.07 3.60 7.71 -2.91 -0.02 3.58 15 9 C -0.41 -18.59 5.74 71.24 0.41 -18.18 15 10 S 2.50 99.30 5.08 -56.49 -0.29 99.02 15 11 O -0.97 -41.75 17.13 -127.65 -2.19 -43.94 15 12 O -0.98 -43.40 17.12 -127.65 -2.19 -45.58 15 13 C -0.65 -20.44 5.66 22.27 0.13 -20.31 15 14 C -0.01 -0.32 9.47 22.27 0.21 -0.11 15 15 C -0.11 -2.28 9.83 22.29 0.22 -2.06 15 16 C 0.01 0.22 6.32 22.34 0.14 0.36 15 17 Cl -0.03 -0.52 27.96 -2.72 -0.08 -0.59 15 18 C -0.06 -1.63 6.32 22.34 0.14 -1.49 15 19 Cl -0.04 -0.87 27.96 -2.72 -0.08 -0.95 15 20 C -0.02 -0.48 9.25 22.29 0.21 -0.27 15 21 H 0.27 14.01 8.31 -92.71 -0.77 13.24 15 22 H 0.09 3.97 8.14 -2.39 -0.02 3.95 15 23 H 0.09 4.09 8.14 -2.39 -0.02 4.07 15 24 H 0.17 3.91 7.57 -2.91 -0.02 3.89 15 25 H 0.19 2.48 8.06 -2.91 -0.02 2.46 15 26 H 0.16 4.68 7.57 -2.91 -0.02 4.65 15 Total: -1.00 -63.96 282.08 0.87 -63.09 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.22 Total: 5.15 kcal Atomic # 6 Polarization: -72.08 SS G_CDS: 2.15 Total: -69.93 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.28 Total: -49.28 kcal Atomic # 8 Polarization: -85.14 SS G_CDS: -4.37 Total: -89.52 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 99.30 SS G_CDS: -0.29 Total: 99.02 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.15 Total: -1.54 kcal Total: -63.96 0.87 -63.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002023273.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.094 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds