Wall clock time and date at job start Tue Mar 31 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47276 * 270.00151 * 3 2 1 5 5 H 1.48507 * 109.47357 * 29.99839 * 3 2 1 6 6 H 1.48501 * 109.47199 * 149.99634 * 3 2 1 7 7 C 1.37876 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00155 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47171 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53888 * 73.29816 * 10 9 7 12 12 O 1.42100 * 110.54166 * 296.54894 * 10 9 7 13 13 C 1.76200 * 104.44769 * 184.92071 * 10 9 7 14 14 N 1.30736 * 126.35924 * 86.34904 * 13 10 9 15 15 N 1.28426 * 110.64698 * 179.97438 * 14 13 10 16 16 N 1.28947 * 110.19841 * 359.97438 * 15 14 13 17 17 N 1.35067 * 126.36552 * 266.31938 * 13 10 9 18 18 C 1.40259 * 127.38384 * 359.97438 * 17 13 10 19 19 C 1.38821 * 120.06027 * 224.09328 * 18 17 13 20 20 C 1.38125 * 119.93325 * 179.72468 * 19 18 17 21 21 C 1.38277 * 120.06442 * 0.54900 * 20 19 18 22 22 C 1.38275 * 120.13207 * 359.72944 * 21 20 19 23 23 C 1.38125 * 120.06114 * 359.97438 * 22 21 20 24 24 H 0.97009 * 119.99845 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46870 * 59.99993 * 9 7 2 26 26 H 1.08994 * 109.46953 * 300.00248 * 9 7 2 27 27 H 1.08000 * 120.03364 * 359.97438 * 19 18 17 28 28 H 1.08005 * 119.96802 * 180.28103 * 20 19 18 29 29 H 1.08003 * 119.93352 * 179.74481 * 21 20 19 30 30 H 1.07993 * 119.97178 * 180.02562 * 22 21 20 31 31 H 1.08001 * 120.03286 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8779 0.0005 11 8 3.0445 -4.0084 1.2751 12 8 3.2059 -3.8704 -1.1898 13 6 1.4234 -5.3168 -0.1458 14 7 0.9943 -5.8526 -1.2585 15 7 0.2841 -6.8945 -1.0149 16 7 0.2105 -7.0959 0.2566 17 7 0.9523 -6.0714 0.8705 18 6 1.1600 -5.8757 2.2438 19 6 1.4725 -6.9540 3.0604 20 6 1.6821 -6.7574 4.4114 21 6 1.5698 -5.4899 4.9526 22 6 1.2530 -4.4149 4.1428 23 6 1.0482 -4.6044 2.7900 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 1.5556 -7.9449 2.6390 28 1 1.9298 -7.5952 5.0464 29 1 1.7301 -5.3393 6.0100 30 1 1.1663 -3.4261 4.5681 31 1 0.8012 -3.7643 2.1578 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002492064.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:11 Heat of formation + Delta-G solvation = 85.097615 kcal Electronic energy + Delta-G solvation = -21349.622170 eV Core-core repulsion = 17954.965268 eV Total energy + Delta-G solvation = -3394.656902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.057 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.18847 -39.51511 -36.70980 -35.54130 -35.08563 -33.65832 -32.45918 -31.19690 -30.18584 -29.42371 -25.38291 -24.19922 -23.56240 -22.54279 -22.10088 -19.31437 -18.37303 -17.50266 -16.96429 -16.66197 -16.40899 -15.63606 -15.33070 -15.06485 -14.54634 -14.45581 -13.91718 -13.67378 -13.35393 -12.75534 -12.66777 -12.52697 -11.93199 -11.73472 -11.69433 -11.64154 -11.58225 -11.47600 -11.10613 -11.07925 -10.99486 -10.83179 -10.70905 -10.07684 -9.59723 -9.12948 -8.92865 -8.91475 -6.55918 -4.70731 0.14515 0.39563 1.18441 1.23063 1.71011 2.02572 3.09869 3.10643 3.18101 3.21467 3.43829 3.97178 4.05189 4.24536 4.50857 4.64186 4.78380 4.82931 4.90763 5.07310 5.07808 5.14896 5.25075 5.37570 5.74928 5.95932 6.08666 6.20718 6.22985 6.31570 6.37340 6.70468 7.14736 7.45140 8.20114 8.30170 8.99436 10.54969 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.006401 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.127061 B = 4373.101606 C = 5339.328216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.079 0.921 9 C -0.372 4.372 10 S 2.452 3.548 11 O -0.923 6.923 12 O -0.907 6.907 13 C -0.264 4.264 14 N -0.245 5.245 15 N -0.045 5.045 16 N -0.063 5.063 17 N -0.267 5.267 18 C 0.102 3.898 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.093 4.093 23 C -0.071 4.071 24 H 0.274 0.726 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.144 0.856 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -7.780 10.209 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.126 4.126 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.510 4.510 10 S 2.622 3.378 11 O -0.919 6.919 12 O -0.903 6.903 13 C -0.615 4.615 14 N -0.095 5.095 15 N -0.040 5.040 16 N -0.047 5.047 17 N -0.060 5.060 18 C 0.012 3.988 19 C -0.108 4.108 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.092 4.092 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.162 0.838 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.802 -8.891 9.410 12.970 hybrid contribution -0.135 0.918 0.342 0.989 sum 0.667 -7.973 9.752 12.614 Atomic orbital electron populations 1.69940 1.06328 1.28398 1.46127 1.24924 0.95087 0.99619 0.92948 0.86259 0.79916 0.81075 0.79123 1.19570 1.20435 1.18836 1.20279 0.93107 0.87424 1.57331 0.90324 1.27494 1.08749 1.06807 1.07942 1.08692 0.78373 0.75294 0.75393 1.93580 1.72853 1.84995 1.40449 1.93554 1.65083 1.84560 1.47096 1.40606 1.13618 1.19372 0.87904 1.74408 1.08792 1.03756 1.22542 1.78005 1.10799 1.09036 1.06198 1.82482 1.11778 1.08173 1.02241 1.48773 1.32070 1.18425 1.06729 1.17593 1.07394 0.96285 0.77576 1.20938 0.98308 0.97624 0.93883 1.21021 1.00442 0.97949 0.93751 1.21397 0.97141 0.92474 1.00470 1.21059 0.98050 1.00075 0.91947 1.21222 0.96745 0.94308 0.96890 0.91672 0.88074 0.89005 0.84883 0.84631 0.84797 0.83848 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.54 13.29 55.43 0.74 -21.80 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 3 Si 0.91 19.10 29.54 -169.99 -5.02 14.08 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.54 -13.35 9.13 -34.44 -0.31 -13.67 16 8 H 0.08 1.87 7.71 -52.49 -0.40 1.47 16 9 C -0.37 -8.15 5.53 36.01 0.20 -7.95 16 10 S 2.45 50.33 4.50 -107.50 -0.48 49.85 16 11 O -0.92 -18.68 14.48 -57.54 -0.83 -19.52 16 12 O -0.91 -20.96 17.95 -57.54 -1.03 -22.00 16 13 C -0.26 -5.25 7.62 -90.16 -0.69 -5.94 16 14 N -0.24 -5.11 12.15 30.30 0.37 -4.74 16 15 N -0.05 -0.90 13.39 60.35 0.81 -0.09 16 16 N -0.06 -1.16 13.84 60.35 0.84 -0.33 16 17 N -0.27 -4.88 3.73 -10.94 -0.04 -4.93 16 18 C 0.10 1.63 5.66 -83.57 -0.47 1.16 16 19 C -0.09 -1.13 9.91 -39.41 -0.39 -1.52 16 20 C -0.11 -1.14 10.04 -39.61 -0.40 -1.53 16 21 C -0.10 -0.95 10.04 -39.55 -0.40 -1.35 16 22 C -0.09 -1.12 10.04 -39.61 -0.40 -1.52 16 23 C -0.07 -1.09 7.19 -39.41 -0.28 -1.37 16 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.10 2.25 8.14 -51.92 -0.42 1.82 16 26 H 0.09 1.88 6.02 -51.93 -0.31 1.57 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.13 2.12 4.69 -52.49 -0.25 1.87 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -30.54 291.91 -5.72 -36.26 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -2.21 Total: 0.54 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: -3.24 Total: -31.73 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 2.71 Total: -31.89 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.87 Total: -41.51 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 50.33 SS G_CDS: -0.48 Total: 49.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.54 -5.72 -36.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002492064.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.358 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds