Wall clock time and date at job start Tue Mar 31 2020 03:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47276 * 270.00151 * 3 2 1 5 5 H 1.48507 * 109.47357 * 29.99839 * 3 2 1 6 6 H 1.48501 * 109.47199 * 149.99634 * 3 2 1 7 7 C 1.37876 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00155 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47171 * 179.97438 * 9 7 2 11 11 O 1.42101 * 110.53888 * 73.29816 * 10 9 7 12 12 O 1.42100 * 110.54166 * 296.54894 * 10 9 7 13 13 C 1.76200 * 104.44769 * 184.92071 * 10 9 7 14 14 N 1.30736 * 126.35924 * 86.34904 * 13 10 9 15 15 N 1.28426 * 110.64698 * 179.97438 * 14 13 10 16 16 N 1.28947 * 110.19841 * 359.97438 * 15 14 13 17 17 N 1.35067 * 126.36552 * 266.31938 * 13 10 9 18 18 C 1.40259 * 127.38384 * 359.97438 * 17 13 10 19 19 C 1.38821 * 120.06027 * 224.09328 * 18 17 13 20 20 C 1.38125 * 119.93325 * 179.72468 * 19 18 17 21 21 C 1.38277 * 120.06442 * 0.54900 * 20 19 18 22 22 C 1.38275 * 120.13207 * 359.72944 * 21 20 19 23 23 C 1.38125 * 120.06114 * 359.97438 * 22 21 20 24 24 H 0.97009 * 119.99845 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46870 * 59.99993 * 9 7 2 26 26 H 1.08994 * 109.46953 * 300.00248 * 9 7 2 27 27 H 1.08000 * 120.03364 * 359.97438 * 19 18 17 28 28 H 1.08005 * 119.96802 * 180.28103 * 20 19 18 29 29 H 1.08003 * 119.93352 * 179.74481 * 21 20 19 30 30 H 1.07993 * 119.97178 * 180.02562 * 22 21 20 31 31 H 1.08001 * 120.03286 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8779 0.0005 11 8 3.0445 -4.0084 1.2751 12 8 3.2059 -3.8704 -1.1898 13 6 1.4234 -5.3168 -0.1458 14 7 0.9943 -5.8526 -1.2585 15 7 0.2841 -6.8945 -1.0149 16 7 0.2105 -7.0959 0.2566 17 7 0.9523 -6.0714 0.8705 18 6 1.1600 -5.8757 2.2438 19 6 1.4725 -6.9540 3.0604 20 6 1.6821 -6.7574 4.4114 21 6 1.5698 -5.4899 4.9526 22 6 1.2530 -4.4149 4.1428 23 6 1.0482 -4.6044 2.7900 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 1.5556 -7.9449 2.6390 28 1 1.9298 -7.5952 5.0464 29 1 1.7301 -5.3393 6.0100 30 1 1.1663 -3.4261 4.5681 31 1 0.8012 -3.7643 2.1578 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002492064.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:10 Heat of formation + Delta-G solvation = 63.510250 kcal Electronic energy + Delta-G solvation = -21350.558269 eV Core-core repulsion = 17954.965268 eV Total energy + Delta-G solvation = -3395.593000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.057 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.68874 -40.55173 -38.37575 -37.27265 -36.40301 -35.51721 -33.97587 -32.18340 -31.34373 -31.19507 -26.79854 -25.78337 -25.16817 -23.68084 -23.26505 -20.74785 -19.82953 -19.16969 -18.50859 -18.15959 -17.67952 -17.32404 -16.87144 -16.20802 -16.17917 -15.52950 -15.31771 -14.76238 -14.63777 -14.50356 -14.14302 -14.00807 -13.52186 -13.37278 -13.34665 -13.19203 -12.88262 -12.82500 -12.72116 -12.57709 -12.49712 -12.28859 -12.06980 -11.81705 -11.35378 -10.79430 -10.09184 -9.95233 -8.44047 -6.65021 -1.38667 -1.14103 0.11214 0.24629 0.34588 0.45756 1.43377 1.45916 1.50309 1.58437 2.28569 2.32010 2.55221 2.64193 2.91325 3.21254 3.44520 3.59039 3.61918 3.76233 4.07656 4.10924 4.32498 4.35332 4.51320 4.56056 4.86906 4.94342 5.12145 5.27045 5.30941 5.38979 5.59853 5.80635 6.42568 6.67402 7.08644 8.68026 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.006401 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.127061 B = 4373.101606 C = 5339.328216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.565 4.565 8 H 0.081 0.919 9 C -0.381 4.381 10 S 2.489 3.511 11 O -0.918 6.918 12 O -0.936 6.936 13 C -0.278 4.278 14 N -0.264 5.264 15 N -0.057 5.057 16 N -0.057 5.057 17 N -0.251 5.251 18 C 0.057 3.943 19 C -0.093 4.093 20 C -0.101 4.101 21 C -0.077 4.077 22 C -0.101 4.101 23 C -0.099 4.099 24 H 0.277 0.723 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.142 0.858 28 H 0.179 0.821 29 H 0.179 0.821 30 H 0.162 0.838 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -8.149 13.051 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.169 4.169 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.604 4.604 8 H 0.099 0.901 9 C -0.518 4.518 10 S 2.660 3.340 11 O -0.914 6.914 12 O -0.932 6.932 13 C -0.630 4.630 14 N -0.116 5.116 15 N -0.052 5.052 16 N -0.041 5.041 17 N -0.043 5.043 18 C -0.032 4.032 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.120 4.120 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.159 0.841 28 H 0.196 0.804 29 H 0.196 0.804 30 H 0.180 0.820 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.662 -9.250 12.263 15.450 hybrid contribution -0.430 0.925 -0.331 1.072 sum 1.231 -8.326 11.932 14.601 Atomic orbital electron populations 1.70018 1.07618 1.29385 1.47034 1.25770 0.95857 1.02805 0.92426 0.85410 0.79165 0.77312 0.79273 1.19360 1.19472 1.17834 1.20670 0.93610 0.88767 1.57335 0.90119 1.27486 1.09211 1.07257 1.07875 1.07402 0.77335 0.74613 0.74656 1.93565 1.72692 1.85002 1.40122 1.93511 1.65942 1.85223 1.48500 1.40156 1.14612 1.19794 0.88478 1.74348 1.09530 1.04346 1.23376 1.77965 1.11280 1.09102 1.06824 1.82401 1.11451 1.08438 1.01844 1.48968 1.30424 1.17329 1.07603 1.18103 1.10763 0.97787 0.76581 1.21266 0.97969 0.97084 0.95006 1.21568 0.98127 0.99534 0.92671 1.21952 0.93884 0.91392 1.02277 1.21442 0.97651 1.02061 0.90831 1.21326 0.98693 0.93616 0.98402 0.91341 0.89169 0.88045 0.84061 0.80379 0.80356 0.82043 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.37 13.29 21.45 0.28 -47.09 16 2 C 0.04 1.82 5.46 84.65 0.46 2.28 16 3 Si 0.97 38.70 29.54 68.60 2.03 40.73 16 4 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.56 -28.26 9.13 25.60 0.23 -28.03 16 8 H 0.08 3.88 7.71 -2.91 -0.02 3.86 16 9 C -0.38 -17.27 5.53 71.24 0.39 -16.88 16 10 S 2.49 104.51 4.50 -56.49 -0.25 104.25 16 11 O -0.92 -37.24 14.48 -127.65 -1.85 -39.09 16 12 O -0.94 -44.30 17.95 -127.65 -2.29 -46.59 16 13 C -0.28 -11.34 7.62 180.19 1.37 -9.96 16 14 N -0.26 -11.36 12.15 -58.04 -0.71 -12.07 16 15 N -0.06 -2.30 13.39 37.02 0.50 -1.81 16 16 N -0.06 -2.13 13.84 37.02 0.51 -1.61 16 17 N -0.25 -9.24 3.73 -188.54 -0.70 -9.94 16 18 C 0.06 1.80 5.66 38.07 0.22 2.01 16 19 C -0.09 -2.19 9.91 22.38 0.22 -1.97 16 20 C -0.10 -1.58 10.04 22.25 0.22 -1.35 16 21 C -0.08 -1.16 10.04 22.29 0.22 -0.93 16 22 C -0.10 -2.21 10.04 22.25 0.22 -1.99 16 23 C -0.10 -3.00 7.19 22.38 0.16 -2.84 16 24 H 0.28 13.52 8.31 -92.70 -0.77 12.75 16 25 H 0.09 4.23 8.14 -2.39 -0.02 4.21 16 26 H 0.10 4.35 6.02 -2.39 -0.01 4.33 16 27 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 28 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 29 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.11 3.77 4.69 -2.91 -0.01 3.76 16 Total: -1.00 -66.75 291.91 2.43 -64.32 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.19 Total: 8.57 kcal Atomic # 6 Polarization: -63.39 SS G_CDS: 3.73 Total: -59.66 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -0.12 Total: -72.52 kcal Atomic # 8 Polarization: -81.54 SS G_CDS: -4.14 Total: -85.68 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Atomic # 16 Polarization: 104.51 SS G_CDS: -0.25 Total: 104.25 kcal Total: -66.75 2.43 -64.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002492064.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.825 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds