Wall clock time and date at job start Tue Mar 31 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86798 * 119.99978 * 2 1 4 4 H 1.48497 * 109.47351 * 239.99787 * 3 2 1 5 5 H 1.48508 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47311 * 119.99654 * 3 2 1 7 7 C 1.39943 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99862 * 163.84027 * 7 2 1 9 9 C 1.41348 * 119.99859 * 343.84087 * 7 2 1 10 10 C 1.40717 * 120.25252 * 333.92333 * 9 7 2 11 11 C 1.36583 * 119.87728 * 179.97438 * 10 9 7 12 12 C 1.50701 * 119.79316 * 180.02562 * 11 10 9 13 13 F 1.39897 * 109.47107 * 90.00452 * 12 11 10 14 14 F 1.39899 * 109.46690 * 210.00409 * 12 11 10 15 15 F 1.39903 * 109.47428 * 330.00265 * 12 11 10 16 16 C 1.38674 * 120.40820 * 359.75183 * 11 10 9 17 17 C 1.38572 * 120.51878 * 0.51290 * 16 11 10 18 18 C 1.37823 * 120.10446 * 359.48111 * 17 16 11 19 19 Br 1.89095 * 120.20111 * 180.23413 * 18 17 16 20 20 H 0.96993 * 120.00004 * 5.04337 * 1 2 3 21 21 H 1.08001 * 120.06409 * 359.95934 * 10 9 7 22 22 H 1.07994 * 119.74035 * 180.25170 * 16 11 10 23 23 H 1.07995 * 119.94370 * 179.76995 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6965 1.2126 7 6 2.0081 -1.2119 0.0005 8 1 3.0561 -1.2305 -0.2598 9 6 1.3432 -2.4117 0.3418 10 6 0.2117 -2.3821 1.1777 11 6 -0.4252 -3.5460 1.5021 12 6 -1.6372 -3.5120 2.3971 13 9 -2.7895 -3.3711 1.6165 14 9 -1.7113 -4.7032 3.1271 15 9 -1.5359 -2.4304 3.2786 16 6 0.0331 -4.7581 1.0085 17 6 1.1490 -4.8072 0.1883 18 6 1.8079 -3.6457 -0.1527 19 35 3.3270 -3.7088 -1.2770 20 1 -0.4850 0.8367 -0.0738 21 1 -0.1524 -1.4409 1.5624 22 1 -0.4811 -5.6714 1.2686 23 1 1.5002 -5.7566 -0.1879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002541335.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:00 Heat of formation + Delta-G solvation = -154.667839 kcal Electronic energy + Delta-G solvation = -15935.609722 eV Core-core repulsion = 12571.809080 eV Total energy + Delta-G solvation = -3363.800642 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 293.956 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.08747 -48.59584 -48.55435 -39.72309 -35.81098 -33.43972 -31.73151 -30.52273 -27.49158 -26.27048 -23.31774 -22.17193 -19.87430 -19.42395 -19.25594 -18.23893 -16.89624 -16.48042 -15.83519 -15.46547 -15.26733 -15.17941 -15.02414 -14.79295 -14.73999 -14.42115 -13.96955 -13.33652 -13.18787 -12.92896 -12.70902 -12.34662 -11.87946 -11.68233 -11.54942 -11.17771 -10.64929 -9.60818 -9.49810 -8.78735 -6.52310 0.34768 0.82435 1.24244 1.39450 1.48764 1.51723 1.80718 2.15852 2.47906 2.93892 3.22130 3.25114 3.64505 4.29131 4.48513 4.86037 4.96277 5.16651 5.23809 5.49650 5.67669 5.72608 6.00369 6.34291 6.66252 6.70370 8.16616 Molecular weight = 293.96amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.008951 C = 0.005818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.188957 B = 3127.273564 C = 4811.336785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.039 3.961 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.097 0.903 9 C 0.098 3.902 10 C -0.128 4.128 11 C -0.157 4.157 12 C 0.513 3.487 13 F -0.185 7.185 14 F -0.177 7.177 15 F -0.186 7.186 16 C -0.207 4.207 17 C -0.054 4.054 18 C -0.196 4.196 19 Br -0.073 7.073 20 H 0.296 0.704 21 H 0.121 0.879 22 H 0.134 0.866 23 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 -3.453 0.244 4.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.115 0.885 9 C 0.094 3.906 10 C -0.148 4.148 11 C -0.159 4.159 12 C 0.459 3.541 13 F -0.166 7.166 14 F -0.158 7.158 15 F -0.167 7.167 16 C -0.227 4.227 17 C -0.074 4.074 18 C -0.276 4.276 19 Br 0.012 6.988 20 H 0.107 0.893 21 H 0.138 0.862 22 H 0.152 0.848 23 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.364 -3.313 -0.104 4.071 hybrid contribution -0.500 0.749 0.356 0.968 sum 1.864 -2.564 0.252 3.180 Atomic orbital electron populations 1.69776 1.09108 1.31703 1.32844 1.26832 0.95465 1.04741 0.90883 0.85234 0.78900 0.75298 0.80456 1.18038 1.19151 1.18143 1.20044 0.98694 0.91017 1.39352 0.88497 1.17625 0.91239 0.92406 0.89359 1.20883 0.98227 0.96282 0.99406 1.19658 0.96389 0.97146 1.02688 1.18432 0.83821 0.72968 0.78904 1.93161 1.53009 1.95535 1.74916 1.93130 1.96750 1.47054 1.78900 1.93133 1.96319 1.56444 1.70826 1.20352 1.00856 0.95656 1.05870 1.20764 0.93997 0.96621 0.96020 1.21916 1.00626 0.96468 1.08609 1.96296 1.38245 1.98861 1.65382 0.89328 0.86161 0.84792 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.29 10.96 21.83 0.24 -39.05 14 2 C 0.04 1.79 5.16 85.25 0.44 2.23 14 3 Si 0.98 35.44 29.59 68.60 2.03 37.47 14 4 H -0.26 -9.00 7.11 99.48 0.71 -8.30 14 5 H -0.27 -9.20 7.11 99.48 0.71 -8.49 14 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 14 7 C -0.46 -22.66 8.45 23.45 0.20 -22.46 14 8 H 0.10 4.58 6.91 -2.91 -0.02 4.56 14 9 C 0.10 4.86 5.56 -21.28 -0.12 4.74 14 10 C -0.13 -6.25 7.97 22.49 0.18 -6.07 14 11 C -0.16 -6.87 5.42 -20.15 -0.11 -6.98 14 12 C 0.51 20.30 3.35 71.24 0.24 20.54 14 13 F -0.18 -7.33 17.30 44.97 0.78 -6.55 14 14 F -0.18 -6.31 16.45 44.97 0.74 -5.57 14 15 F -0.19 -7.49 16.42 44.97 0.74 -6.75 14 16 C -0.21 -8.28 9.40 22.45 0.21 -8.07 14 17 C -0.05 -2.16 9.78 22.25 0.22 -1.95 14 18 C -0.20 -8.72 6.28 22.80 0.14 -8.58 14 19 Br -0.07 -2.79 32.12 -20.37 -0.65 -3.45 14 20 H 0.30 13.02 8.30 -92.71 -0.77 12.25 14 21 H 0.12 6.20 5.72 -2.91 -0.02 6.18 14 22 H 0.13 4.59 7.59 -2.91 -0.02 4.57 14 23 H 0.14 4.62 8.06 -2.91 -0.02 4.59 14 Total: -1.00 -50.12 242.12 6.54 -43.58 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.27 Total: 6.94 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 1.40 Total: -26.60 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.24 Total: -39.05 kcal Atomic # 9 Polarization: -21.14 SS G_CDS: 2.26 Total: -18.88 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 35 Polarization: -2.79 SS G_CDS: -0.65 Total: -3.45 kcal Total: -50.12 6.54 -43.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002541335.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.092 kcal (2) G-P(sol) polarization free energy of solvation -50.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds