Wall clock time and date at job start Tue Mar 31 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47155 * 270.00609 * 3 2 1 5 5 H 1.48505 * 109.46899 * 30.00196 * 3 2 1 6 6 H 1.48494 * 109.47191 * 150.00372 * 3 2 1 7 7 C 1.40154 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.41005 * 120.00023 * 359.97438 * 7 2 1 10 10 O 1.21879 * 120.00100 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99785 * 179.97438 * 9 7 2 12 12 C 1.37385 * 120.00162 * 180.02562 * 11 9 7 13 13 S 1.75624 * 125.36745 * 0.03098 * 12 11 9 14 14 C 1.75787 * 91.56510 * 180.02562 * 13 12 11 15 15 C 1.34806 * 110.74815 * 359.97438 * 14 13 12 16 16 C 1.37794 * 125.37408 * 179.71985 * 12 11 9 17 17 C 1.46836 * 122.75537 * 359.97438 * 16 12 11 18 18 N 1.34780 * 119.99547 * 270.02013 * 17 16 12 19 19 O 1.21673 * 120.00452 * 90.02141 * 17 16 12 20 20 C 1.52356 * 122.93388 * 180.02562 * 15 14 13 21 21 C 1.52954 * 108.82484 * 342.56066 * 20 15 14 22 22 C 1.53153 * 109.22963 * 51.16587 * 21 20 15 23 23 C 1.51641 * 124.73775 * 179.97438 * 14 13 12 24 24 H 0.97007 * 120.00450 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00675 * 0.02562 * 11 9 7 26 26 H 0.97000 * 120.00591 * 0.02562 * 18 17 16 27 27 H 0.97003 * 119.99661 * 179.97438 * 18 17 16 28 28 H 1.09000 * 109.58030 * 102.36674 * 20 15 14 29 29 H 1.09004 * 109.57454 * 222.62870 * 20 15 14 30 30 H 1.08998 * 109.50972 * 171.09094 * 21 20 15 31 31 H 1.08994 * 109.51349 * 291.23756 * 21 20 15 32 32 H 1.08996 * 109.55776 * 49.14291 * 22 21 20 33 33 H 1.08999 * 109.55450 * 169.45711 * 22 21 20 34 34 H 1.09007 * 109.58724 * 283.34141 * 23 14 13 35 35 H 1.08994 * 109.58937 * 43.77809 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4876 2.0465 -1.4000 5 1 1.4376 2.6527 0.7001 6 1 3.5377 1.4402 0.6999 7 6 2.0070 -1.2138 -0.0005 8 1 3.0870 -1.2137 -0.0010 9 6 1.3019 -2.4349 -0.0005 10 8 0.0832 -2.4349 -0.0005 11 7 1.9759 -3.6021 -0.0016 12 6 1.2890 -4.7919 -0.0021 13 16 -0.4595 -4.9563 -0.0023 14 6 -0.3428 -6.7103 -0.0022 15 6 0.9468 -7.1031 -0.0026 16 6 1.8633 -6.0445 -0.0087 17 6 3.3169 -6.2520 -0.0166 18 7 3.9781 -6.3434 -1.1875 19 8 3.9245 -6.3415 1.0338 20 6 1.3665 -8.5677 -0.0032 21 6 0.1748 -9.4229 0.4306 22 6 -1.0477 -9.0494 -0.4129 23 6 -1.5288 -7.6552 -0.0018 24 1 -0.4851 0.8401 0.0004 25 1 2.9459 -3.6022 -0.0020 26 1 3.4939 -6.2717 -2.0249 27 1 4.9384 -6.4801 -1.1927 28 1 1.6784 -8.8579 -1.0065 29 1 2.1937 -8.7109 0.6921 30 1 0.4104 -10.4769 0.2835 31 1 -0.0399 -9.2406 1.4835 32 1 -0.7752 -9.0447 -1.4683 33 1 -1.8434 -9.7747 -0.2432 34 1 -1.9620 -7.6975 0.9976 35 1 -2.2768 -7.3031 -0.7120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002703022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:31 Heat of formation + Delta-G solvation = -71.787835 kcal Electronic energy + Delta-G solvation = -21216.093464 eV Core-core repulsion = 17918.173842 eV Total energy + Delta-G solvation = -3297.919622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.66877 -38.20605 -37.83479 -34.93516 -33.29747 -33.01351 -32.40581 -30.46261 -28.23399 -26.63234 -24.30852 -22.81628 -21.77325 -20.55711 -19.65977 -18.34825 -17.57763 -17.20851 -16.55065 -16.06334 -15.55336 -15.13581 -14.54500 -14.13872 -13.96543 -13.76526 -13.62726 -13.52563 -12.96416 -12.66471 -12.45333 -12.24170 -12.05589 -11.53258 -11.41733 -11.00674 -10.92920 -10.78041 -10.71192 -10.52497 -10.38151 -9.88863 -9.56477 -9.45321 -9.43042 -9.10619 -8.02672 -7.62737 -6.86276 -6.62427 -5.16549 1.74918 2.13743 2.80577 2.91463 3.01185 3.02268 3.06170 3.09519 3.81509 4.04702 4.18515 4.38639 4.98958 5.03762 5.08570 5.42075 5.44585 5.49179 5.64501 5.72170 5.82021 5.96872 5.98365 6.05812 6.13230 6.21503 6.37610 6.44940 6.85721 6.99545 7.01514 7.09767 7.44666 7.60945 7.66141 7.78924 8.54905 8.59165 8.85036 10.03407 10.25468 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004899 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.791136 B = 5714.194596 C = 6764.280095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.525 3.475 10 O -0.547 6.547 11 N -0.646 5.646 12 C 0.138 3.862 13 S 0.255 5.745 14 C -0.297 4.297 15 C -0.038 4.038 16 C -0.285 4.285 17 C 0.601 3.399 18 N -0.852 5.852 19 O -0.547 6.547 20 C -0.058 4.058 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.032 4.032 24 H 0.278 0.722 25 H 0.400 0.600 26 H 0.402 0.598 27 H 0.395 0.605 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 -12.182 -4.124 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.559 4.559 8 H 0.093 0.907 9 C 0.336 3.664 10 O -0.432 6.432 11 N -0.284 5.284 12 C -0.087 4.087 13 S 0.516 5.484 14 C -0.414 4.414 15 C -0.050 4.050 16 C -0.303 4.303 17 C 0.385 3.615 18 N -0.415 5.415 19 O -0.424 6.424 20 C -0.098 4.098 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.071 4.071 24 H 0.089 0.911 25 H 0.235 0.765 26 H 0.230 0.770 27 H 0.225 0.775 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.789 -10.880 -3.337 11.408 hybrid contribution 2.531 -0.093 -0.419 2.567 sum 1.742 -10.973 -3.756 11.728 Atomic orbital electron populations 1.69971 1.07386 1.28580 1.30291 1.25792 0.94764 1.00951 0.92300 0.86169 0.80247 0.80117 0.79277 1.19260 1.19938 1.18478 1.19856 0.94726 0.89629 1.51667 0.90689 1.17168 0.87794 0.82065 0.79349 1.90609 1.13104 1.83551 1.55924 1.43570 1.09839 1.03294 1.71739 1.22492 0.98790 0.88692 0.98741 1.85389 0.96666 0.94312 1.72059 1.25286 0.97130 1.01389 1.17604 1.18678 0.90685 0.93724 1.01894 1.18145 0.92937 0.91368 1.27891 1.17732 0.86770 0.73841 0.83145 1.43972 1.11794 1.76846 1.08891 1.90796 1.69781 1.49864 1.31968 1.20499 0.97757 0.90426 1.01070 1.21486 0.95026 0.98476 1.00283 1.21533 0.97447 0.96138 1.00022 1.20048 0.93683 0.92257 1.01139 0.91113 0.76520 0.76983 0.77470 0.91407 0.91344 0.92125 0.91719 0.91827 0.91958 0.91435 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.04 11.71 55.56 0.65 -19.39 16 2 C 0.09 2.21 5.50 -17.35 -0.10 2.12 16 3 Si 0.92 18.49 29.56 -169.99 -5.02 13.46 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.52 -13.70 9.27 -37.81 -0.35 -14.05 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.52 14.01 7.50 -15.21 -0.11 13.89 16 10 O -0.55 -15.92 12.32 5.03 0.06 -15.86 16 11 N -0.65 -14.71 5.31 -13.29 -0.07 -14.78 16 12 C 0.14 2.97 7.16 -15.23 -0.11 2.86 16 13 S 0.25 5.26 20.31 -107.50 -2.18 3.08 16 14 C -0.30 -5.10 6.34 -35.06 -0.22 -5.32 16 15 C -0.04 -0.65 5.80 -104.34 -0.60 -1.26 16 16 C -0.28 -5.42 5.60 -105.91 -0.59 -6.02 16 17 C 0.60 10.72 6.35 -12.78 -0.08 10.64 16 18 N -0.85 -10.85 8.87 30.30 0.27 -10.58 16 19 O -0.55 -11.70 17.94 5.21 0.09 -11.61 16 20 C -0.06 -0.81 5.63 -27.08 -0.15 -0.97 16 21 C -0.12 -1.36 5.89 -26.68 -0.16 -1.52 16 22 C -0.11 -1.27 5.94 -26.60 -0.16 -1.43 16 23 C -0.03 -0.44 6.25 -27.36 -0.17 -0.61 16 24 H 0.28 6.79 8.29 -40.82 -0.34 6.46 16 25 H 0.40 8.32 8.11 -40.82 -0.33 7.99 16 26 H 0.40 4.36 8.81 -40.82 -0.36 4.00 16 27 H 0.40 4.16 8.93 -40.82 -0.36 3.80 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.02 7.98 -51.93 -0.41 0.60 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -32.42 311.46 -8.29 -40.71 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -3.97 Total: 11.93 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.81 Total: -1.66 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.85 Total: -44.75 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: 0.16 Total: -27.46 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.46 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -2.18 Total: 3.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.42 -8.29 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002703022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.077 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds