Wall clock time and date at job start Tue Mar 31 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86800 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47155 * 270.00609 * 3 2 1 5 5 H 1.48505 * 109.46899 * 30.00196 * 3 2 1 6 6 H 1.48494 * 109.47191 * 150.00372 * 3 2 1 7 7 C 1.40154 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.41005 * 120.00023 * 359.97438 * 7 2 1 10 10 O 1.21879 * 120.00100 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99785 * 179.97438 * 9 7 2 12 12 C 1.37385 * 120.00162 * 180.02562 * 11 9 7 13 13 S 1.75624 * 125.36745 * 0.03098 * 12 11 9 14 14 C 1.75787 * 91.56510 * 180.02562 * 13 12 11 15 15 C 1.34806 * 110.74815 * 359.97438 * 14 13 12 16 16 C 1.37794 * 125.37408 * 179.71985 * 12 11 9 17 17 C 1.46836 * 122.75537 * 359.97438 * 16 12 11 18 18 N 1.34780 * 119.99547 * 270.02013 * 17 16 12 19 19 O 1.21673 * 120.00452 * 90.02141 * 17 16 12 20 20 C 1.52356 * 122.93388 * 180.02562 * 15 14 13 21 21 C 1.52954 * 108.82484 * 342.56066 * 20 15 14 22 22 C 1.53153 * 109.22963 * 51.16587 * 21 20 15 23 23 C 1.51641 * 124.73775 * 179.97438 * 14 13 12 24 24 H 0.97007 * 120.00450 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00675 * 0.02562 * 11 9 7 26 26 H 0.97000 * 120.00591 * 0.02562 * 18 17 16 27 27 H 0.97003 * 119.99661 * 179.97438 * 18 17 16 28 28 H 1.09000 * 109.58030 * 102.36674 * 20 15 14 29 29 H 1.09004 * 109.57454 * 222.62870 * 20 15 14 30 30 H 1.08998 * 109.50972 * 171.09094 * 21 20 15 31 31 H 1.08994 * 109.51349 * 291.23756 * 21 20 15 32 32 H 1.08996 * 109.55776 * 49.14291 * 22 21 20 33 33 H 1.08999 * 109.55450 * 169.45711 * 22 21 20 34 34 H 1.09007 * 109.58724 * 283.34141 * 23 14 13 35 35 H 1.08994 * 109.58937 * 43.77809 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4876 2.0465 -1.4000 5 1 1.4376 2.6527 0.7001 6 1 3.5377 1.4402 0.6999 7 6 2.0070 -1.2138 -0.0005 8 1 3.0870 -1.2137 -0.0010 9 6 1.3019 -2.4349 -0.0005 10 8 0.0832 -2.4349 -0.0005 11 7 1.9759 -3.6021 -0.0016 12 6 1.2890 -4.7919 -0.0021 13 16 -0.4595 -4.9563 -0.0023 14 6 -0.3428 -6.7103 -0.0022 15 6 0.9468 -7.1031 -0.0026 16 6 1.8633 -6.0445 -0.0087 17 6 3.3169 -6.2520 -0.0166 18 7 3.9781 -6.3434 -1.1875 19 8 3.9245 -6.3415 1.0338 20 6 1.3665 -8.5677 -0.0032 21 6 0.1748 -9.4229 0.4306 22 6 -1.0477 -9.0494 -0.4129 23 6 -1.5288 -7.6552 -0.0018 24 1 -0.4851 0.8401 0.0004 25 1 2.9459 -3.6022 -0.0020 26 1 3.4939 -6.2717 -2.0249 27 1 4.9384 -6.4801 -1.1927 28 1 1.6784 -8.8579 -1.0065 29 1 2.1937 -8.7109 0.6921 30 1 0.4104 -10.4769 0.2835 31 1 -0.0399 -9.2406 1.4835 32 1 -0.7752 -9.0447 -1.4683 33 1 -1.8434 -9.7747 -0.2432 34 1 -1.9620 -7.6975 0.9976 35 1 -2.2768 -7.3031 -0.7120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002703022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:31 Heat of formation + Delta-G solvation = -96.114366 kcal Electronic energy + Delta-G solvation = -21217.148342 eV Core-core repulsion = 17918.173842 eV Total energy + Delta-G solvation = -3298.974500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16836 -40.02023 -39.11834 -36.53456 -34.95272 -34.54081 -34.04642 -31.58686 -29.90940 -28.28298 -25.71985 -24.21094 -22.93841 -22.28673 -21.09030 -19.93073 -18.96892 -18.71735 -18.07479 -17.76894 -17.10874 -16.61114 -16.05216 -15.60999 -15.40430 -15.31936 -14.98853 -14.72060 -14.63734 -14.03687 -13.79038 -13.53034 -13.40413 -13.16984 -12.95901 -12.87590 -12.53920 -12.15980 -12.06468 -11.66025 -11.47750 -11.20453 -11.11536 -11.05579 -10.91493 -10.70927 -9.96799 -9.22060 -8.53016 -8.48083 -7.17087 0.16951 0.56286 1.32687 1.34316 1.37392 1.53759 1.55824 1.63295 2.13810 2.28309 2.66154 2.79721 3.44479 3.92554 3.95628 4.09614 4.19668 4.33124 4.46639 4.65952 4.69588 4.78328 4.91195 5.06279 5.08199 5.09558 5.19974 5.27058 5.50112 5.52413 5.63944 5.75139 5.83361 5.88573 5.91841 6.37636 6.58498 6.98705 7.30224 8.08888 8.37574 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.004899 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.791136 B = 5714.194596 C = 6764.280095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.037 3.963 3 Si 1.003 2.997 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.512 3.488 10 O -0.584 6.584 11 N -0.646 5.646 12 C 0.099 3.901 13 S 0.191 5.809 14 C -0.269 4.269 15 C -0.054 4.054 16 C -0.265 4.265 17 C 0.601 3.399 18 N -0.823 5.823 19 O -0.587 6.587 20 C -0.055 4.055 21 C -0.114 4.114 22 C -0.106 4.106 23 C -0.038 4.038 24 H 0.285 0.715 25 H 0.406 0.594 26 H 0.415 0.585 27 H 0.411 0.589 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -13.943 -4.971 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.184 4.184 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.587 4.587 8 H 0.108 0.892 9 C 0.324 3.676 10 O -0.472 6.472 11 N -0.286 5.286 12 C -0.123 4.123 13 S 0.453 5.547 14 C -0.387 4.387 15 C -0.066 4.066 16 C -0.285 4.285 17 C 0.384 3.616 18 N -0.386 5.386 19 O -0.467 6.467 20 C -0.094 4.094 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.077 4.077 24 H 0.096 0.904 25 H 0.242 0.758 26 H 0.245 0.755 27 H 0.244 0.756 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.156 -12.687 -4.236 13.376 hybrid contribution 2.217 0.236 -0.179 2.237 sum 2.373 -12.451 -4.415 13.421 Atomic orbital electron populations 1.70094 1.09540 1.30156 1.31450 1.26978 0.95565 1.04948 0.90893 0.84929 0.78704 0.74445 0.79828 1.18045 1.19232 1.17539 1.20354 0.95685 0.90313 1.52308 0.89189 1.17470 0.87675 0.83376 0.79119 1.90583 1.14428 1.84834 1.57320 1.43086 1.09830 1.03052 1.72666 1.22642 0.98694 0.88976 1.02003 1.85472 0.97885 0.98300 1.73031 1.25640 0.98767 0.99040 1.15222 1.19165 0.90269 0.95403 1.01723 1.18567 0.94232 0.90974 1.24725 1.17599 0.86270 0.73884 0.83820 1.43648 1.12621 1.74444 1.07899 1.90787 1.70130 1.52208 1.33572 1.20594 0.98537 0.88084 1.02176 1.21519 0.94131 0.99702 0.99761 1.21543 0.98067 0.94723 1.00138 1.20296 0.92393 0.92958 1.02080 0.90447 0.75843 0.75467 0.75589 0.89273 0.92290 0.89120 0.92601 0.91221 0.89021 0.90681 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.29 11.71 21.85 0.26 -44.04 16 2 C 0.04 1.90 5.50 85.34 0.47 2.37 16 3 Si 1.00 37.98 29.56 68.60 2.03 40.00 16 4 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 7 C -0.55 -29.69 9.27 23.41 0.22 -29.47 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.51 28.63 7.50 84.92 0.64 29.27 16 10 O -0.58 -35.94 12.32 -4.92 -0.06 -36.00 16 11 N -0.65 -30.67 5.31 -314.09 -1.67 -32.34 16 12 C 0.10 4.41 7.16 83.72 0.60 5.01 16 13 S 0.19 8.23 20.31 -56.49 -1.15 7.08 16 14 C -0.27 -9.06 6.34 25.20 0.16 -8.90 16 15 C -0.05 -1.81 5.80 -19.68 -0.11 -1.92 16 16 C -0.27 -10.08 5.60 -20.70 -0.12 -10.20 16 17 C 0.60 20.95 6.35 86.49 0.55 21.50 16 18 N -0.82 -19.41 8.87 -176.28 -1.56 -20.97 16 19 O -0.59 -24.90 17.94 -4.26 -0.08 -24.98 16 20 C -0.05 -1.37 5.63 30.37 0.17 -1.20 16 21 C -0.11 -2.25 5.89 30.63 0.18 -2.07 16 22 C -0.11 -1.97 5.94 30.68 0.18 -1.78 16 23 C -0.04 -0.95 6.25 30.18 0.19 -0.76 16 24 H 0.29 14.39 8.29 -92.70 -0.77 13.62 16 25 H 0.41 17.47 8.11 -92.71 -0.75 16.72 16 26 H 0.41 8.08 8.81 -92.71 -0.82 7.27 16 27 H 0.41 7.71 8.93 -92.71 -0.83 6.88 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.06 1.62 7.98 -2.39 -0.02 1.60 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 32 H 0.07 1.25 8.10 -2.39 -0.02 1.23 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.78 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.16 311.46 -0.33 -74.49 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -1.22 Total: 34.92 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 3.12 Total: 1.84 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -2.98 Total: -97.35 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -0.14 Total: -60.98 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -1.15 Total: 7.08 kcal Total: -74.16 -0.33 -74.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002703022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.620 kcal (2) G-P(sol) polarization free energy of solvation -74.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds