Wall clock time and date at job start Tue Mar 31 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 110.53366 * 2 1 4 4 C 1.38244 * 119.98364 * 266.89626 * 3 2 1 5 5 C 1.38218 * 120.00987 * 179.72864 * 4 3 2 6 6 C 1.38351 * 119.98736 * 0.54565 * 5 4 3 7 7 Cl 1.73592 * 120.01609 * 179.74937 * 6 5 4 8 8 C 1.38358 * 119.97289 * 359.72616 * 6 5 4 9 9 C 1.38211 * 119.98611 * 0.02562 * 8 6 5 10 10 N 1.47304 * 110.59965 * 122.99578 * 2 1 3 11 11 C 1.34529 * 106.61953 * 118.52541 * 10 2 1 12 12 O 1.21528 * 123.77016 * 180.26765 * 11 10 2 13 13 N 1.33790 * 112.45599 * 0.02562 * 11 10 2 14 14 C 1.37513 * 124.17757 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99771 * 327.09556 * 14 13 11 16 16 C 1.38890 * 119.99957 * 147.08796 * 14 13 11 17 17 N 1.31381 * 120.00055 * 340.13219 * 16 14 13 18 18 Si 1.86804 * 120.00040 * 160.13707 * 16 14 13 19 19 H 1.48492 * 109.47115 * 59.99990 * 18 16 14 20 20 H 1.48507 * 109.47144 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47024 * 299.99796 * 18 16 14 22 22 C 1.34765 * 111.64745 * 359.97438 * 13 11 10 23 23 O 1.21233 * 127.16126 * 180.02562 * 22 13 11 24 24 H 1.08996 * 109.47083 * 182.13239 * 1 2 3 25 25 H 1.08997 * 109.46988 * 302.12947 * 1 2 3 26 26 H 1.09005 * 109.47115 * 62.12678 * 1 2 3 27 27 H 1.07996 * 119.99240 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.00663 * 180.27096 * 5 4 3 29 29 H 1.07994 * 120.00814 * 180.02562 * 8 6 5 30 30 H 1.08007 * 119.99710 * 179.97438 * 9 8 6 31 31 H 0.97005 * 126.69452 * 298.56573 * 10 2 1 32 32 H 0.97004 * 120.00445 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.3617 2.0355 -1.1957 5 6 2.8412 3.3319 -1.1966 6 6 3.0286 4.0007 -0.0001 7 17 3.6370 5.6265 -0.0001 8 6 2.7304 3.3734 1.1965 9 6 2.2461 2.0789 1.1959 10 7 2.0483 -0.7509 1.1565 11 6 2.7599 -1.7790 0.6601 12 8 3.3248 -2.6049 1.3498 13 7 2.7719 -1.7935 -0.6777 14 6 3.4262 -2.7373 -1.4341 15 1 4.3461 -3.1744 -1.0747 16 6 2.9039 -3.1285 -2.6602 17 7 1.6354 -2.9194 -2.9307 18 14 4.0051 -3.9520 -3.9246 19 1 4.5612 -5.2056 -3.3551 20 1 3.2126 -4.2687 -5.1399 21 1 5.1171 -3.0358 -4.2842 22 6 2.0636 -0.7690 -1.1923 23 8 1.8892 -0.5154 -2.3649 24 1 -0.3633 -1.0269 0.0382 25 1 -0.3633 0.5465 0.8703 26 1 -0.3633 0.4805 -0.9085 27 1 2.2191 1.5119 -2.1294 28 1 3.0738 3.8210 -2.1310 29 1 2.8760 3.8951 2.1308 30 1 2.0137 1.5889 2.1299 31 1 1.9041 -0.5447 2.0933 32 1 1.2706 -3.1923 -3.7871 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003572794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:10 Heat of formation + Delta-G solvation = -34.416549 kcal Electronic energy + Delta-G solvation = -21548.371371 eV Core-core repulsion = 18114.195489 eV Total energy + Delta-G solvation = -3434.175883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.056 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.25784 -40.31784 -39.03760 -37.65168 -36.90034 -36.19007 -33.84874 -32.38718 -31.99383 -30.20311 -27.84200 -25.62261 -24.02011 -23.76004 -22.49703 -21.53407 -19.48991 -18.54461 -17.99469 -17.58564 -17.30576 -16.60796 -16.41866 -15.96183 -15.75380 -15.60018 -15.07893 -14.93990 -14.61131 -14.18783 -14.12466 -13.61115 -13.47439 -13.29184 -12.96063 -12.84312 -12.70643 -12.55128 -12.31998 -12.21215 -11.82076 -11.58961 -11.31435 -10.69127 -10.46439 -10.04831 -9.98383 -9.64122 -8.51317 -6.34721 0.00623 0.28321 1.04568 1.12307 1.37233 1.43858 1.50445 1.83723 2.28671 2.44072 2.50062 2.79561 3.09283 3.26914 3.49857 3.86619 3.90279 3.99935 4.34113 4.41219 4.56673 4.66631 4.69612 4.82568 4.99897 5.06842 5.17601 5.20542 5.31384 5.45811 5.73648 5.86482 6.00057 6.30992 6.67861 7.14175 7.17389 7.79866 8.58622 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.020307 B = 0.005130 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.470023 B = 5456.392238 C = 6018.278178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.171 3.829 3 C -0.087 4.087 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.036 4.036 7 Cl -0.064 7.064 8 C -0.104 4.104 9 C -0.082 4.082 10 N -0.706 5.706 11 C 0.672 3.328 12 O -0.604 6.604 13 N -0.429 5.429 14 C -0.388 4.388 15 H 0.090 0.910 16 C 0.018 3.982 17 N -0.856 5.856 18 Si 0.995 3.005 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.268 1.268 22 C 0.493 3.507 23 O -0.486 6.486 24 H 0.054 0.946 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.145 0.855 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.444 0.556 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.205 15.066 6.633 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.080 3.920 3 C -0.088 4.088 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.063 4.063 7 Cl -0.035 7.035 8 C -0.123 4.123 9 C -0.101 4.101 10 N -0.372 5.372 11 C 0.375 3.625 12 O -0.484 6.484 13 N -0.161 5.161 14 C -0.513 4.513 15 H 0.107 0.893 16 C -0.190 4.190 17 N -0.489 5.489 18 Si 0.816 3.184 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.193 1.193 22 C 0.281 3.719 23 O -0.358 6.358 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.162 0.838 29 H 0.182 0.818 30 H 0.177 0.823 31 H 0.290 0.710 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.080 14.820 6.145 16.178 hybrid contribution 0.370 -0.611 -0.476 0.858 sum -1.710 14.209 5.669 15.394 Atomic orbital electron populations 1.21905 0.88355 1.03288 1.05169 1.20116 0.97723 0.89679 0.84503 1.19576 1.01155 0.92992 0.95085 1.21384 0.97715 0.94976 0.98911 1.21126 0.99729 0.93928 0.98120 1.21105 1.02353 0.87420 0.95385 1.98365 1.86178 1.20029 1.98953 1.21289 0.98727 0.94584 0.97675 1.21062 0.97697 0.93835 0.97462 1.45347 1.54751 1.28330 1.08817 1.16539 0.80363 0.82450 0.83154 1.90782 1.51697 1.43429 1.62521 1.42078 1.44604 1.24169 1.05254 1.19467 1.07115 1.22653 1.02105 0.89260 1.26218 0.96589 0.96148 1.00064 1.69969 1.12830 1.42241 1.23871 0.85005 0.78004 0.78564 0.76829 1.18545 1.19640 1.19256 1.20732 0.80699 0.80822 0.89669 1.90513 1.58293 1.68888 1.18133 0.92656 0.87056 0.90465 0.85567 0.83752 0.81777 0.82316 0.70968 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.96 71.98 0.65 -3.07 16 2 C 0.17 5.93 1.16 2.24 0.00 5.93 16 3 C -0.09 -2.55 4.89 -19.86 -0.10 -2.65 16 4 C -0.11 -3.50 9.18 22.27 0.20 -3.30 16 5 C -0.11 -2.86 9.83 22.29 0.22 -2.64 16 6 C -0.04 -0.81 6.32 22.33 0.14 -0.67 16 7 Cl -0.06 -1.26 28.96 -2.72 -0.08 -1.34 16 8 C -0.10 -2.04 9.83 22.29 0.22 -1.82 16 9 C -0.08 -1.79 9.35 22.26 0.21 -1.58 16 10 N -0.71 -24.27 5.37 -443.26 -2.38 -26.65 16 11 C 0.67 32.41 8.57 179.44 1.54 33.94 16 12 O -0.60 -32.65 17.62 -3.81 -0.07 -32.72 16 13 N -0.43 -22.91 2.69 -598.61 -1.61 -24.52 16 14 C -0.39 -22.45 9.46 83.96 0.79 -21.66 16 15 H 0.09 5.22 7.91 -2.91 -0.02 5.20 16 16 C 0.02 1.01 4.82 84.92 0.41 1.42 16 17 N -0.86 -49.01 11.19 21.65 0.24 -48.77 16 18 Si 0.99 43.59 29.60 68.60 2.03 45.62 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 C 0.49 23.78 5.72 87.94 0.50 24.28 16 23 O -0.49 -25.75 13.25 -2.88 -0.04 -25.78 16 24 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.13 4.74 5.60 -2.91 -0.02 4.72 16 28 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.16 2.46 7.12 -2.91 -0.02 2.44 16 31 H 0.44 11.12 8.20 -92.70 -0.76 10.36 16 32 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -72.50 295.77 3.31 -69.19 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.43 Total: 16.78 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 4.79 Total: 28.19 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -3.75 Total: -99.94 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -0.11 Total: -58.50 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -72.50 3.31 -69.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.770 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds