Wall clock time and date at job start Tue Mar 31 2020 03:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99677 * 2 1 4 4 H 1.48507 * 109.47273 * 270.00077 * 3 2 1 5 5 H 1.48508 * 109.47275 * 30.00224 * 3 2 1 6 6 H 1.48499 * 109.47453 * 150.00093 * 3 2 1 7 7 C 1.37869 * 120.00509 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99595 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00345 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.46901 * 174.89680 * 10 9 7 12 12 C 1.35476 * 127.82128 * 96.22194 * 11 10 9 13 13 O 1.21608 * 126.87255 * 0.02562 * 12 11 10 14 14 O 1.34236 * 106.25804 * 180.02562 * 12 11 10 15 15 N 1.21008 * 110.89217 * 0.02562 * 14 12 11 16 16 C 1.29935 * 111.54891 * 359.70897 * 15 14 12 17 17 C 1.48051 * 126.52800 * 180.28906 * 16 15 14 18 18 C 1.39474 * 120.12126 * 10.62738 * 17 16 15 19 19 C 1.37953 * 119.87536 * 179.72225 * 18 17 16 20 20 C 1.38471 * 120.12286 * 0.55193 * 19 18 17 21 21 Cl 1.73596 * 119.88006 * 179.70413 * 20 19 18 22 22 C 1.38470 * 120.23866 * 359.72277 * 20 19 18 23 23 C 1.37952 * 120.12297 * 359.97438 * 22 20 19 24 24 H 0.96997 * 120.00426 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46853 * 299.99703 * 9 7 2 26 26 H 1.09000 * 109.47183 * 59.99903 * 9 7 2 27 27 H 1.08997 * 109.47081 * 294.89277 * 10 9 7 28 28 H 1.08994 * 109.47189 * 54.89874 * 10 9 7 29 29 H 1.08000 * 120.06130 * 359.97438 * 18 17 16 30 30 H 1.07998 * 119.93890 * 180.27497 * 19 18 17 31 31 H 1.08004 * 119.93960 * 179.97438 * 22 20 19 32 32 H 1.07992 * 120.06327 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 7 5.4816 -2.6380 -0.1237 12 6 6.3984 -2.7245 0.8700 13 8 6.1760 -2.8184 2.0619 14 8 7.6014 -2.6859 0.2758 15 7 7.4867 -2.5883 -0.9249 16 6 6.2384 -2.5559 -1.2840 17 6 5.7219 -2.4485 -2.6673 18 6 6.5880 -2.5925 -3.7510 19 6 6.1003 -2.4972 -5.0379 20 6 4.7556 -2.2476 -5.2547 21 17 4.1500 -2.1212 -6.8767 22 6 3.8924 -2.0980 -4.1824 23 6 4.3682 -2.1977 -2.8914 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6795 -0.8895 26 1 3.8746 -0.6806 0.8905 27 1 3.7346 -3.1241 0.9301 28 1 3.5860 -3.1749 -0.8429 29 1 7.6378 -2.7824 -3.5830 30 1 6.7692 -2.6130 -5.8778 31 1 2.8445 -1.9031 -4.3571 32 1 3.6941 -2.0813 -2.0558 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004966411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:46 Heat of formation + Delta-G solvation = 40.644791 kcal Electronic energy + Delta-G solvation = -20918.207674 eV Core-core repulsion = 17487.286696 eV Total energy + Delta-G solvation = -3430.920979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.12260 -39.61371 -38.36584 -37.06115 -36.38862 -33.82107 -32.47255 -31.39864 -30.91151 -30.01841 -26.56386 -24.60418 -23.42616 -22.79024 -21.51827 -21.00716 -18.31599 -18.09457 -17.48189 -16.98885 -16.36703 -16.15513 -15.24183 -15.14002 -14.56904 -14.43739 -13.98835 -13.86956 -13.69872 -13.21574 -13.08289 -12.74439 -12.55858 -12.03473 -11.87841 -11.67241 -11.38782 -11.32876 -10.95418 -10.61798 -10.46842 -10.35599 -10.06541 -9.59487 -9.27599 -9.16719 -8.79713 -8.46709 -6.30648 -4.34437 0.37339 1.08856 1.88997 1.94198 1.96796 2.33663 3.14261 3.24244 3.27661 3.33172 3.44985 3.96153 4.22905 4.46192 4.66789 4.70788 4.87935 5.01578 5.03787 5.24598 5.43537 5.63011 5.74276 5.80076 5.84323 5.94731 6.03523 6.15692 6.18630 6.48572 6.77343 6.90736 7.37523 7.60147 8.17162 8.21062 8.68867 9.28870 10.81021 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.007023 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.601333 B = 3985.800441 C = 6231.504864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.081 3.919 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.081 0.919 9 C -0.034 4.034 10 C 0.132 3.868 11 N -0.541 5.541 12 C 0.558 3.442 13 O -0.479 6.479 14 O -0.008 6.008 15 N -0.341 5.341 16 C 0.277 3.723 17 C -0.031 4.031 18 C -0.063 4.063 19 C -0.117 4.117 20 C -0.016 4.016 21 Cl -0.067 7.067 22 C -0.103 4.103 23 C -0.085 4.085 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.030 0.970 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.651 -5.268 -11.827 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.123 4.123 3 Si 0.698 3.302 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.099 0.901 9 C -0.072 4.072 10 C 0.014 3.986 11 N -0.278 5.278 12 C 0.309 3.691 13 O -0.359 6.359 14 O -0.051 6.051 15 N -0.076 5.076 16 C 0.010 3.990 17 C -0.033 4.033 18 C -0.083 4.083 19 C -0.135 4.135 20 C -0.044 4.044 21 Cl -0.038 7.038 22 C -0.122 4.122 23 C -0.104 4.104 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.329 -5.180 -11.530 16.974 hybrid contribution -0.438 1.026 0.251 1.144 sum 10.891 -4.154 -11.279 16.220 Atomic orbital electron populations 1.69869 1.06192 1.27445 1.48998 1.24887 0.94676 0.98984 0.93779 0.86907 0.80575 0.83838 0.78918 1.19805 1.20834 1.19052 1.20736 0.87625 0.95171 1.53603 0.90143 1.20128 0.98489 0.90494 0.98068 1.22367 0.69075 1.02380 1.04729 1.47435 1.10297 1.64304 1.05773 1.20592 0.80547 0.80877 0.87049 1.91157 1.79999 1.54887 1.09884 1.85518 1.29710 1.76080 1.13758 1.74146 1.15977 1.23810 0.93716 1.22608 0.86624 0.99841 0.89897 1.17467 0.94119 1.05473 0.86263 1.21092 1.00036 0.96801 0.90371 1.20938 0.93590 1.01574 0.97442 1.21234 0.94251 1.02630 0.86237 1.98383 1.88087 1.96286 1.20999 1.21134 1.00854 0.99687 0.90481 1.22199 0.94548 0.94640 0.99013 0.92202 0.95837 0.95159 0.87893 0.88325 0.83817 0.84140 0.83461 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 13.96 55.43 0.77 -24.30 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -13.27 9.65 -34.44 -0.33 -13.60 16 8 H 0.08 2.10 7.99 -52.48 -0.42 1.69 16 9 C -0.03 -0.71 3.50 -27.88 -0.10 -0.81 16 10 C 0.13 2.29 5.26 -4.04 -0.02 2.27 16 11 N -0.54 -9.18 2.86 -119.33 -0.34 -9.52 16 12 C 0.56 10.18 9.34 54.33 0.51 10.69 16 13 O -0.48 -9.99 17.98 -18.89 -0.34 -10.33 16 14 O -0.01 -0.13 11.25 -7.53 -0.08 -0.21 16 15 N -0.34 -5.26 11.76 32.10 0.38 -4.89 16 16 C 0.28 4.23 7.77 -153.61 -1.19 3.03 16 17 C -0.03 -0.41 5.87 -104.95 -0.62 -1.03 16 18 C -0.06 -0.68 9.69 -39.23 -0.38 -1.06 16 19 C -0.12 -1.14 9.81 -39.60 -0.39 -1.53 16 20 C -0.02 -0.18 6.32 -39.41 -0.25 -0.43 16 21 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 22 C -0.10 -1.27 9.81 -39.60 -0.39 -1.66 16 23 C -0.08 -1.17 8.47 -39.22 -0.33 -1.50 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.48 6.11 -51.93 -0.32 0.17 16 26 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 27 H 0.10 1.82 8.13 -51.93 -0.42 1.40 16 28 H 0.10 1.51 6.11 -51.93 -0.32 1.19 16 29 H 0.14 1.33 7.90 -52.49 -0.41 0.92 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.15 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.17 2.66 2.98 -52.49 -0.16 2.51 16 LS Contribution 296.80 15.07 4.47 4.47 Total: -1.00 -28.48 296.80 -7.34 -35.81 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -2.43 Total: -0.85 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -3.59 Total: -3.59 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.81 Total: -38.71 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.42 Total: -10.54 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.48 -7.34 -35.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004966411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.458 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds