Wall clock time and date at job start Tue Mar 31 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47455 * 2 1 4 4 C 1.50705 * 109.47080 * 120.00581 * 2 1 3 5 5 N 1.27005 * 125.12153 * 354.97161 * 4 2 1 6 6 N 1.39341 * 114.48368 * 179.97438 * 5 4 2 7 7 C 1.34778 * 125.65478 * 179.97438 * 6 5 4 8 8 O 1.21792 * 120.00277 * 180.02562 * 7 6 5 9 9 C 1.41749 * 119.99695 * 359.97438 * 7 6 5 10 10 H 1.07996 * 120.00049 * 0.02562 * 9 7 6 11 11 C 1.40177 * 119.99416 * 179.97438 * 9 7 6 12 12 N 1.30604 * 120.00665 * 0.02562 * 11 9 7 13 13 Si 1.86808 * 119.99503 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46726 * 90.00347 * 13 11 9 15 15 H 1.48499 * 109.46979 * 209.99872 * 13 11 9 16 16 H 1.48493 * 109.47132 * 330.00326 * 13 11 9 17 17 C 1.47233 * 108.69683 * 359.97438 * 6 5 4 18 18 O 1.42894 * 110.66246 * 241.39225 * 17 6 5 19 19 C 1.53006 * 110.66343 * 118.43947 * 17 6 5 20 20 F 1.39900 * 109.46764 * 61.45420 * 19 17 6 21 21 F 1.39897 * 109.47129 * 181.45398 * 19 17 6 22 22 F 1.39903 * 109.46814 * 301.45891 * 19 17 6 23 23 C 1.51202 * 125.12038 * 174.94904 * 4 2 1 24 24 H 1.09000 * 109.47046 * 299.99654 * 1 2 3 25 25 H 1.08997 * 109.47620 * 60.00058 * 1 2 3 26 26 H 1.09003 * 109.47395 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46542 * 239.99789 * 2 1 3 28 28 H 1.09000 * 109.46711 * 60.00141 * 3 2 1 29 29 H 1.08993 * 109.47320 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47370 * 300.00355 * 3 2 1 31 31 H 0.97001 * 120.00628 * 179.97438 * 12 11 9 32 32 H 0.96703 * 113.99884 * 296.30055 * 18 17 6 33 33 H 1.09003 * 110.56028 * 61.44226 * 23 4 2 34 34 H 1.08999 * 110.56110 * 298.59950 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 7 1.3002 -1.1487 2.1712 6 7 1.9982 -1.7717 3.2038 7 6 1.4484 -2.3147 4.3081 8 8 2.1589 -2.8352 5.1493 9 6 0.0432 -2.2790 4.4909 10 1 -0.5868 -1.8171 3.7451 11 6 -0.5287 -2.8443 5.6391 12 7 0.2331 -3.4033 6.5407 13 14 -2.3806 -2.7979 5.8797 14 1 -2.9881 -4.0135 5.2809 15 1 -2.6902 -2.7536 7.3313 16 1 -2.9357 -1.5899 5.2180 17 6 3.4361 -1.7385 2.8888 18 8 3.9576 -3.0639 2.7730 19 6 4.2035 -0.9491 3.9513 20 9 4.0549 -1.5738 5.1942 21 9 5.5597 -0.9053 3.6106 22 9 3.6976 0.3534 4.0205 23 6 3.4837 -1.0096 1.5306 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1299 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 -0.1626 -3.7941 7.3354 32 1 3.9160 -3.5759 3.5924 33 1 4.0562 -0.0855 1.6115 34 1 3.9076 -1.6578 0.7636 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005008155.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:34 Heat of formation + Delta-G solvation = -215.470902 kcal Electronic energy + Delta-G solvation = -25790.041693 eV Core-core repulsion = 21501.281894 eV Total energy + Delta-G solvation = -4288.759799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.28692 -48.83669 -48.71713 -41.68260 -38.82456 -37.70943 -35.79435 -34.81429 -32.15483 -31.55117 -28.87110 -28.03178 -27.03610 -24.63455 -23.23667 -21.90178 -20.65292 -20.04554 -19.64326 -19.40848 -18.84560 -17.87334 -16.84533 -16.31328 -16.22342 -15.70296 -15.65476 -15.62096 -15.21019 -15.18851 -15.03622 -14.95684 -14.91176 -14.84148 -14.56278 -14.30250 -13.71133 -13.55989 -13.16013 -12.93334 -12.80970 -12.74928 -12.54705 -12.49975 -12.08192 -11.99921 -11.88024 -11.70189 -11.02439 -10.95471 -10.13416 -9.51185 -8.48408 -7.08045 1.10042 1.24244 1.34941 1.39727 1.52391 1.77819 2.15121 2.22392 2.31807 2.62481 2.67171 3.10427 3.20828 3.47747 3.57397 3.72733 4.21254 4.29393 4.39479 4.45822 4.54502 4.96093 4.99684 5.12781 5.16373 5.19291 5.34892 5.53354 5.56885 5.77396 5.93540 6.07527 6.46559 6.68772 7.30471 8.15780 8.43476 Molecular weight = 294.10amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.008032 C = 0.005699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.526265 B = 3485.164080 C = 4912.115252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.010 4.010 3 C -0.141 4.141 4 C 0.078 3.922 5 N -0.239 5.239 6 N -0.497 5.497 7 C 0.552 3.448 8 O -0.592 6.592 9 C -0.536 4.536 10 H 0.085 0.915 11 C 0.032 3.968 12 N -0.793 5.793 13 Si 0.999 3.001 14 H -0.257 1.257 15 H -0.265 1.265 16 H -0.253 1.253 17 C 0.267 3.733 18 O -0.535 6.535 19 C 0.421 3.579 20 F -0.173 7.173 21 F -0.169 7.169 22 F -0.180 7.180 23 C -0.110 4.110 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.126 0.874 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.282 0.718 32 H 0.395 0.605 33 H 0.133 0.867 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 8.047 -13.868 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 C -0.200 4.200 4 C -0.118 4.118 5 N -0.045 5.045 6 N -0.328 5.328 7 C 0.366 3.634 8 O -0.475 6.475 9 C -0.570 4.570 10 H 0.103 0.897 11 C -0.187 4.187 12 N -0.422 5.422 13 Si 0.817 3.183 14 H -0.181 1.181 15 H -0.190 1.190 16 H -0.176 1.176 17 C 0.137 3.863 18 O -0.340 6.340 19 C 0.364 3.636 20 F -0.154 7.154 21 F -0.151 7.151 22 F -0.162 7.162 23 C -0.149 4.149 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.144 0.856 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.698 7.569 -13.182 15.438 hybrid contribution 0.479 -0.403 1.508 1.633 sum 3.177 7.166 -11.674 14.062 Atomic orbital electron populations 1.21725 0.93804 1.01897 1.02437 1.19965 0.96489 0.96094 0.90491 1.21842 1.02046 0.93054 1.03013 1.25863 0.90807 0.98173 0.96945 1.73901 1.26536 1.07035 0.97077 1.51210 1.01495 1.59493 1.20623 1.17165 0.90211 0.78478 0.77518 1.90695 1.63720 1.50599 1.42463 1.20517 0.91311 1.38206 1.07005 0.89729 1.27053 1.06180 0.91677 0.93767 1.70102 1.39508 1.25116 1.07436 0.84995 0.74455 0.80288 0.78534 1.18137 1.18979 1.17604 1.23207 0.83411 0.85346 0.94330 1.86475 1.83121 1.23646 1.40714 1.21676 0.78696 0.79050 0.84208 1.93344 1.95263 1.81819 1.44970 1.93169 1.33448 1.96381 1.92082 1.93143 1.87256 1.39171 1.96614 1.22228 0.98370 1.02074 0.92244 0.94024 0.89212 0.93740 0.85635 0.93975 0.91027 0.88854 0.90756 0.75329 0.84959 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.64 71.98 0.62 -2.44 16 2 C -0.01 -0.20 3.36 -11.54 -0.04 -0.24 16 3 C -0.14 -2.16 9.15 71.98 0.66 -1.50 16 4 C 0.08 2.38 6.45 46.83 0.30 2.68 16 5 N -0.24 -10.05 10.29 -41.35 -0.43 -10.47 16 6 N -0.50 -24.37 3.53 -542.11 -1.91 -26.29 16 7 C 0.55 32.60 7.34 85.11 0.62 33.23 16 8 O -0.59 -37.70 11.42 -4.64 -0.05 -37.76 16 9 C -0.54 -31.32 9.04 23.61 0.21 -31.10 16 10 H 0.08 4.74 7.42 -2.91 -0.02 4.72 16 11 C 0.03 1.78 5.50 85.35 0.47 2.24 16 12 N -0.79 -47.08 11.73 21.86 0.26 -46.83 16 13 Si 1.00 41.01 29.56 68.60 2.03 43.04 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 15 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 16 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 17 C 0.27 10.89 0.99 45.27 0.04 10.94 16 18 O -0.54 -21.95 13.16 -148.98 -1.96 -23.91 16 19 C 0.42 17.59 2.40 71.98 0.17 17.76 16 20 F -0.17 -8.73 13.86 44.97 0.62 -8.10 16 21 F -0.17 -6.03 17.10 44.97 0.77 -5.26 16 22 F -0.18 -7.44 16.65 44.97 0.75 -6.70 16 23 C -0.11 -3.19 6.07 30.42 0.18 -3.01 16 24 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 32 H 0.39 17.23 7.82 -74.06 -0.58 16.65 16 33 H 0.13 3.15 7.43 -2.39 -0.02 3.14 16 34 H 0.15 3.45 8.01 -2.39 -0.02 3.43 16 Total: -1.00 -75.76 303.49 3.91 -71.85 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.58 Total: 21.86 kcal Atomic # 6 Polarization: 25.31 SS G_CDS: 3.25 Total: 28.56 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.08 Total: -83.59 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -2.01 Total: -61.67 kcal Atomic # 9 Polarization: -22.20 SS G_CDS: 2.14 Total: -20.06 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -75.76 3.91 -71.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005008155.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.619 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds