Wall clock time and date at job start Tue Mar 31 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46884 * 2 1 4 4 C 1.50702 * 109.46885 * 119.99551 * 2 1 3 5 5 N 1.27009 * 125.12295 * 354.97929 * 4 2 1 6 6 N 1.39342 * 114.48145 * 180.02562 * 5 4 2 7 7 C 1.34777 * 125.64910 * 180.02562 * 6 5 4 8 8 O 1.21798 * 119.99883 * 180.02562 * 7 6 5 9 9 C 1.41738 * 120.00392 * 0.02562 * 7 6 5 10 10 H 1.07999 * 119.99845 * 6.44038 * 9 7 6 11 11 C 1.40175 * 120.00525 * 186.44053 * 9 7 6 12 12 N 1.30610 * 120.00481 * 184.82764 * 11 9 7 13 13 Si 1.86800 * 119.99570 * 4.82687 * 11 9 7 14 14 H 1.48507 * 109.47140 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47411 * 299.99837 * 13 11 9 16 16 H 1.48500 * 109.47094 * 60.00227 * 13 11 9 17 17 C 1.47227 * 108.69840 * 0.26099 * 6 5 4 18 18 O 1.42907 * 110.66280 * 118.17898 * 17 6 5 19 19 C 1.52998 * 110.66584 * 241.29544 * 17 6 5 20 20 F 1.39900 * 109.46993 * 58.54548 * 19 17 6 21 21 F 1.39900 * 109.47648 * 178.54513 * 19 17 6 22 22 F 1.39906 * 109.47106 * 298.54832 * 19 17 6 23 23 C 1.51202 * 125.12034 * 175.00066 * 4 2 1 24 24 H 1.09000 * 109.47609 * 300.00093 * 1 2 3 25 25 H 1.09003 * 109.47163 * 60.00365 * 1 2 3 26 26 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47124 * 239.99862 * 2 1 3 28 28 H 1.08997 * 109.47352 * 60.00002 * 3 2 1 29 29 H 1.09005 * 109.47065 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47176 * 299.99313 * 3 2 1 31 31 H 0.97003 * 120.00057 * 354.91235 * 12 11 9 32 32 H 0.96702 * 113.99571 * 61.45432 * 18 17 6 33 33 H 1.08998 * 110.56033 * 298.56024 * 23 4 2 34 34 H 1.09001 * 110.56124 * 61.25114 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.3001 -1.1484 2.1714 6 7 1.9983 -1.7702 3.2046 7 6 1.4483 -2.3138 4.3085 8 8 2.1589 -2.8331 5.1504 9 6 0.0429 -2.2811 4.4897 10 1 -0.5952 -1.9155 3.6988 11 6 -0.5189 -2.7232 5.6955 12 7 -1.8168 -2.7820 5.8285 13 14 0.5890 -3.2283 7.1121 14 1 -0.2446 -3.6530 8.2654 15 1 1.4555 -4.3562 6.6852 16 1 1.4369 -2.0767 7.5124 17 6 3.4367 -1.7301 2.8934 18 8 4.1468 -0.9863 3.8858 19 6 4.0024 -3.1463 2.7706 20 9 3.3141 -3.8381 1.7682 21 9 5.3607 -3.0793 2.4425 22 9 3.8495 -3.8168 3.9890 23 6 3.4838 -1.0084 1.5313 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 -2.3924 -2.4509 5.1214 32 1 4.0875 -1.3609 4.7753 33 1 3.9082 -1.6567 0.7648 34 1 4.0562 -0.0841 1.6092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005008164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:38 Heat of formation + Delta-G solvation = -205.556152 kcal Electronic energy + Delta-G solvation = -25853.680551 eV Core-core repulsion = 21565.350688 eV Total energy + Delta-G solvation = -4288.329863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.78164 -47.37150 -47.13819 -40.37877 -37.50883 -36.36885 -34.72959 -33.17243 -30.86267 -30.24774 -27.33024 -26.77341 -25.64802 -23.38878 -21.79948 -20.25124 -19.43622 -18.66169 -18.19780 -17.96452 -17.57665 -16.28653 -15.40069 -15.06024 -14.61634 -14.38296 -14.17045 -14.10461 -14.04976 -13.76254 -13.71026 -13.54510 -13.43976 -13.28273 -13.11620 -13.00792 -12.67689 -12.39855 -12.08831 -11.90924 -11.54780 -11.42829 -11.12289 -10.95281 -10.67134 -10.49145 -10.32466 -9.84040 -9.28830 -9.17846 -8.22849 -8.11809 -7.27822 -5.23526 2.29971 2.66122 3.09281 3.35806 3.58026 3.70007 3.86461 4.00669 4.02319 4.25772 4.40053 4.42575 4.46371 4.77326 4.94304 5.03063 5.20122 5.29547 5.34246 5.43553 5.59045 5.67662 5.82045 5.89381 5.95502 6.23343 6.31776 6.45792 7.26368 7.44042 7.56171 7.77662 7.89620 8.56750 8.72092 9.65960 10.05313 Molecular weight = 294.10amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.008416 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.237307 B = 3326.253603 C = 4636.516768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.051 3.949 5 N -0.185 5.185 6 N -0.474 5.474 7 C 0.558 3.442 8 O -0.602 6.602 9 C -0.551 4.551 10 H 0.087 0.913 11 C 0.060 3.940 12 N -0.804 5.804 13 Si 1.126 2.874 14 H -0.318 1.318 15 H -0.275 1.275 16 H -0.288 1.288 17 C 0.277 3.723 18 O -0.533 6.533 19 C 0.424 3.576 20 F -0.178 7.178 21 F -0.183 7.183 22 F -0.148 7.148 23 C -0.113 4.113 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.284 0.716 32 H 0.401 0.599 33 H 0.107 0.893 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 5.567 -11.641 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.145 4.145 5 N 0.009 4.991 6 N -0.304 5.304 7 C 0.379 3.621 8 O -0.494 6.494 9 C -0.585 4.585 10 H 0.105 0.895 11 C -0.161 4.161 12 N -0.430 5.430 13 Si 0.958 3.042 14 H -0.249 1.249 15 H -0.202 1.202 16 H -0.215 1.215 17 C 0.147 3.853 18 O -0.339 6.339 19 C 0.367 3.633 20 F -0.160 7.160 21 F -0.164 7.164 22 F -0.129 7.129 23 C -0.153 4.153 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.254 0.746 33 H 0.125 0.875 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.704 4.822 -9.620 13.234 hybrid contribution 0.800 0.062 -1.473 1.677 sum 8.504 4.884 -11.093 14.806 Atomic orbital electron populations 1.21730 0.93284 1.02934 1.02043 1.19626 0.96857 0.94977 0.91644 1.21828 1.01189 0.94708 1.02499 1.24884 0.90723 1.01531 0.97317 1.73897 1.25354 1.03964 0.95913 1.50932 1.00431 1.58349 1.20711 1.17030 0.89944 0.78060 0.77074 1.90256 1.63572 1.53762 1.41788 1.21349 0.90700 1.42551 1.03871 0.89514 1.27513 0.97418 0.89973 1.01238 1.70589 1.04385 1.31255 1.36729 0.82421 0.71721 0.78849 0.71226 1.24914 1.20180 1.21483 1.22803 0.83775 0.86483 0.92222 1.86528 1.72532 1.52988 1.21805 1.21434 0.75897 0.90785 0.75210 1.93166 1.79513 1.81591 1.61718 1.93159 1.33841 1.96743 1.92683 1.93384 1.94942 1.82137 1.42425 1.22012 0.98259 1.03002 0.92034 0.91696 0.92419 0.91972 0.89135 0.92102 0.92337 0.91711 0.90466 0.74617 0.87488 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.64 37.16 0.32 -1.39 16 2 C -0.01 -0.12 3.36 -91.77 -0.31 -0.43 16 3 C -0.14 -1.34 9.15 37.16 0.34 -1.00 16 4 C 0.05 0.81 6.45 -79.07 -0.51 0.30 16 5 N -0.18 -3.79 10.30 34.83 0.36 -3.43 16 6 N -0.47 -10.92 3.53 -53.75 -0.19 -11.11 16 7 C 0.56 14.95 7.17 -14.92 -0.11 14.84 16 8 O -0.60 -16.45 8.41 5.10 0.04 -16.41 16 9 C -0.55 -15.52 9.47 -37.52 -0.36 -15.87 16 10 H 0.09 2.48 7.65 -52.49 -0.40 2.08 16 11 C 0.06 1.69 5.52 -17.34 -0.10 1.59 16 12 N -0.80 -22.43 13.64 55.56 0.76 -21.68 16 13 Si 1.13 28.79 25.96 -169.99 -4.41 24.38 16 14 H -0.32 -7.82 7.11 56.52 0.40 -7.42 16 15 H -0.27 -7.27 6.76 56.52 0.38 -6.89 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 C 0.28 5.37 0.98 -66.90 -0.07 5.30 16 18 O -0.53 -10.10 13.16 -35.23 -0.46 -10.56 16 19 C 0.42 8.29 2.41 37.16 0.09 8.38 16 20 F -0.18 -3.50 16.64 2.25 0.04 -3.47 16 21 F -0.18 -3.14 17.11 2.25 0.04 -3.10 16 22 F -0.15 -3.33 13.90 2.25 0.03 -3.30 16 23 C -0.11 -1.70 6.06 -27.00 -0.16 -1.86 16 24 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.28 7.62 8.72 -40.82 -0.36 7.27 16 32 H 0.40 7.61 7.84 45.56 0.36 7.97 16 33 H 0.11 1.37 7.44 -51.93 -0.39 0.99 16 34 H 0.12 1.54 8.00 -51.93 -0.42 1.13 16 LS Contribution 299.46 15.07 4.51 4.51 Total: -1.00 -31.19 299.46 -3.12 -34.31 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -2.97 Total: -0.02 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -0.85 Total: 9.87 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.93 Total: -36.22 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.42 Total: -26.97 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 0.11 Total: -9.86 kcal Atomic # 14 Polarization: 28.79 SS G_CDS: -4.41 Total: 24.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.19 -3.12 -34.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005008164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.247 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds