Wall clock time and date at job start Tue Mar 31 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46884 * 2 1 4 4 C 1.50702 * 109.46885 * 119.99551 * 2 1 3 5 5 N 1.27009 * 125.12295 * 354.97929 * 4 2 1 6 6 N 1.39342 * 114.48145 * 180.02562 * 5 4 2 7 7 C 1.34777 * 125.64910 * 180.02562 * 6 5 4 8 8 O 1.21798 * 119.99883 * 180.02562 * 7 6 5 9 9 C 1.41738 * 120.00392 * 0.02562 * 7 6 5 10 10 H 1.07999 * 119.99845 * 6.44038 * 9 7 6 11 11 C 1.40175 * 120.00525 * 186.44053 * 9 7 6 12 12 N 1.30610 * 120.00481 * 184.82764 * 11 9 7 13 13 Si 1.86800 * 119.99570 * 4.82687 * 11 9 7 14 14 H 1.48507 * 109.47140 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47411 * 299.99837 * 13 11 9 16 16 H 1.48500 * 109.47094 * 60.00227 * 13 11 9 17 17 C 1.47227 * 108.69840 * 0.26099 * 6 5 4 18 18 O 1.42907 * 110.66280 * 118.17898 * 17 6 5 19 19 C 1.52998 * 110.66584 * 241.29544 * 17 6 5 20 20 F 1.39900 * 109.46993 * 58.54548 * 19 17 6 21 21 F 1.39900 * 109.47648 * 178.54513 * 19 17 6 22 22 F 1.39906 * 109.47106 * 298.54832 * 19 17 6 23 23 C 1.51202 * 125.12034 * 175.00066 * 4 2 1 24 24 H 1.09000 * 109.47609 * 300.00093 * 1 2 3 25 25 H 1.09003 * 109.47163 * 60.00365 * 1 2 3 26 26 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47124 * 239.99862 * 2 1 3 28 28 H 1.08997 * 109.47352 * 60.00002 * 3 2 1 29 29 H 1.09005 * 109.47065 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47176 * 299.99313 * 3 2 1 31 31 H 0.97003 * 120.00057 * 354.91235 * 12 11 9 32 32 H 0.96702 * 113.99571 * 61.45432 * 18 17 6 33 33 H 1.08998 * 110.56033 * 298.56024 * 23 4 2 34 34 H 1.09001 * 110.56124 * 61.25114 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.3001 -1.1484 2.1714 6 7 1.9983 -1.7702 3.2046 7 6 1.4483 -2.3138 4.3085 8 8 2.1589 -2.8331 5.1504 9 6 0.0429 -2.2811 4.4897 10 1 -0.5952 -1.9155 3.6988 11 6 -0.5189 -2.7232 5.6955 12 7 -1.8168 -2.7820 5.8285 13 14 0.5890 -3.2283 7.1121 14 1 -0.2446 -3.6530 8.2654 15 1 1.4555 -4.3562 6.6852 16 1 1.4369 -2.0767 7.5124 17 6 3.4367 -1.7301 2.8934 18 8 4.1468 -0.9863 3.8858 19 6 4.0024 -3.1463 2.7706 20 9 3.3141 -3.8381 1.7682 21 9 5.3607 -3.0793 2.4425 22 9 3.8495 -3.8168 3.9890 23 6 3.4838 -1.0084 1.5313 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 -2.3924 -2.4509 5.1214 32 1 4.0875 -1.3609 4.7753 33 1 3.9082 -1.6567 0.7648 34 1 4.0562 -0.0841 1.6092 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005008164.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:38 Heat of formation + Delta-G solvation = -229.600209 kcal Electronic energy + Delta-G solvation = -25854.723179 eV Core-core repulsion = 21565.350688 eV Total energy + Delta-G solvation = -4289.372492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.32846 -48.87607 -48.75786 -41.90039 -39.35184 -37.82390 -35.94282 -35.29203 -32.38711 -31.69969 -28.90683 -28.11660 -27.08078 -24.75093 -23.24771 -21.95296 -20.81232 -20.22292 -20.00937 -19.55419 -19.15783 -18.05785 -16.94228 -16.41812 -16.09037 -15.90954 -15.72932 -15.67916 -15.64174 -15.44220 -15.23664 -15.10220 -14.93522 -14.79830 -14.75386 -14.44095 -14.32394 -13.72985 -13.48024 -13.06266 -12.89903 -12.58952 -12.51688 -12.36621 -12.17897 -11.93344 -11.81425 -11.56391 -11.30251 -11.00872 -10.28542 -9.76319 -9.42046 -7.37909 0.92451 1.09659 1.34578 1.45298 1.62312 1.94530 2.01683 2.23990 2.38075 2.53527 2.57972 2.99924 3.11172 3.22663 3.41917 3.59185 4.12328 4.27675 4.28583 4.35687 4.45911 4.87352 4.89993 5.06665 5.07584 5.24198 5.35322 5.40732 5.47240 5.48706 5.74663 5.85773 6.18955 6.44267 6.96554 7.64427 7.90066 Molecular weight = 294.10amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.008416 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.237307 B = 3326.253603 C = 4636.516768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.012 4.012 3 C -0.140 4.140 4 C 0.089 3.911 5 N -0.247 5.247 6 N -0.493 5.493 7 C 0.564 3.436 8 O -0.614 6.614 9 C -0.576 4.576 10 H 0.069 0.931 11 C 0.032 3.968 12 N -0.819 5.819 13 Si 1.161 2.839 14 H -0.303 1.303 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.268 3.732 18 O -0.530 6.530 19 C 0.423 3.577 20 F -0.180 7.180 21 F -0.166 7.166 22 F -0.170 7.170 23 C -0.111 4.111 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.129 0.871 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.282 0.718 32 H 0.399 0.601 33 H 0.139 0.861 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.019 6.874 -13.975 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.198 4.198 4 C -0.107 4.107 5 N -0.053 5.053 6 N -0.321 5.321 7 C 0.382 3.618 8 O -0.508 6.508 9 C -0.611 4.611 10 H 0.087 0.913 11 C -0.186 4.186 12 N -0.445 5.445 13 Si 0.990 3.010 14 H -0.233 1.233 15 H -0.219 1.219 16 H -0.213 1.213 17 C 0.139 3.861 18 O -0.335 6.335 19 C 0.366 3.634 20 F -0.162 7.162 21 F -0.147 7.147 22 F -0.151 7.151 23 C -0.151 4.151 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.059 0.941 27 H 0.147 0.853 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.157 0.843 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.493 6.157 -11.990 16.486 hybrid contribution 0.351 -0.255 -0.990 1.080 sum 9.843 5.902 -12.980 17.326 Atomic orbital electron populations 1.21729 0.94129 1.01674 1.02405 1.20015 0.96220 0.96431 0.90535 1.21834 1.02294 0.92662 1.03004 1.25956 0.91071 0.97106 0.96536 1.74037 1.26254 1.07761 0.97212 1.50485 1.02201 1.58611 1.20784 1.16748 0.89552 0.77488 0.78040 1.90227 1.63878 1.53904 1.42765 1.21374 0.91889 1.44036 1.03791 0.91286 1.28206 0.97950 0.89928 1.02523 1.70600 1.04527 1.32481 1.36923 0.81968 0.70664 0.77994 0.70331 1.23334 1.21921 1.21312 1.23234 0.81920 0.86854 0.94113 1.86516 1.72312 1.52897 1.21761 1.21538 0.76643 0.90759 0.74474 1.93159 1.79709 1.81707 1.61582 1.93189 1.32430 1.96652 1.92433 1.93337 1.95160 1.82660 1.43959 1.22284 0.98058 1.04589 0.90144 0.94309 0.89076 0.94090 0.85319 0.94034 0.90556 0.88900 0.90676 0.74895 0.84285 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.64 71.98 0.62 -2.51 16 2 C -0.01 -0.22 3.36 -11.54 -0.04 -0.26 16 3 C -0.14 -1.96 9.15 71.98 0.66 -1.30 16 4 C 0.09 2.57 6.45 46.83 0.30 2.87 16 5 N -0.25 -10.07 10.30 -41.35 -0.43 -10.50 16 6 N -0.49 -22.70 3.53 -542.12 -1.91 -24.61 16 7 C 0.56 30.83 7.17 85.11 0.61 31.44 16 8 O -0.61 -34.11 8.41 -4.66 -0.04 -34.15 16 9 C -0.58 -33.62 9.47 23.61 0.22 -33.40 16 10 H 0.07 4.16 7.65 -2.91 -0.02 4.14 16 11 C 0.03 1.83 5.52 85.35 0.47 2.31 16 12 N -0.82 -46.83 13.64 21.86 0.30 -46.53 16 13 Si 1.16 59.49 25.96 68.60 1.78 61.27 16 14 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 15 H -0.29 -15.59 6.76 99.48 0.67 -14.91 16 16 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 17 C 0.27 9.95 0.98 45.26 0.04 10.00 16 18 O -0.53 -19.31 13.16 -148.98 -1.96 -21.27 16 19 C 0.42 15.95 2.41 71.98 0.17 16.12 16 20 F -0.18 -6.81 16.64 44.97 0.75 -6.07 16 21 F -0.17 -5.27 17.11 44.97 0.77 -4.50 16 22 F -0.17 -7.64 13.90 44.97 0.63 -7.02 16 23 C -0.11 -2.92 6.06 30.42 0.18 -2.73 16 24 H 0.04 1.05 8.13 -2.39 -0.02 1.03 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.28 15.70 8.72 -92.71 -0.81 14.89 16 32 H 0.40 15.03 7.84 -74.06 -0.58 14.45 16 33 H 0.14 2.85 7.44 -2.39 -0.02 2.84 16 34 H 0.15 3.11 8.00 -2.39 -0.02 3.10 16 Total: -1.00 -70.13 299.46 3.64 -66.49 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 0.50 Total: 4.35 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 3.25 Total: 22.53 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.04 Total: -81.64 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -2.00 Total: -55.43 kcal Atomic # 9 Polarization: -19.73 SS G_CDS: 2.14 Total: -17.59 kcal Atomic # 14 Polarization: 59.49 SS G_CDS: 1.78 Total: 61.27 kcal Total: -70.13 3.64 -66.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005008164.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.107 kcal (2) G-P(sol) polarization free energy of solvation -70.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds